cluster # 8654

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Schistosoma mansoni
cluster # 8654 cluster # 8654 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8654#0 length = 1320 sequences # 6

consensus_8654#1 length = 314 sequences # 1

consensusID : consensus_8654#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1320
fasta sequence

                              [AACCAAATGATCCTGGCGTAAATCATCACCATGTTTTAAAATAGCTCGATACGTATCGCCATTCGGTTGGATAAAAGTCAGTAATGCAGGTCGTTGAAAACTCTTGAATAGCGTAGCTGTAGACGATTGTACGCCGCATACAATAATATCCGGATTTAGAGGAAGTGGGAATGGTTTATCAATATGCCTAATATGAGCATATTCTTCACTATCCAACTTTGATCTTAACAATTCAATTTTACGTGAACGATTACCCAAATCATTGGTAACTGATTTTAGCAACCGACATAAATCTTGAATGAATTGTGTTTGTTGTAGTAGTTCTATGTTCCATTTTTGACAAGTAGGACTACCAGCATCAAAAGCATGTAAAAGTCTGTTCAAAACATGTTTATACATCTTTTGAGTATCCGGTGAATTTACTGTATCCTGTTCCGAGAAATCATCTTCACCATCATTACTGTTTGCTTCCAACCGTAGAAACCAATATAGGTAATTTGCAATACGAAAATNTAGTTGAGCACGTCTTATGAGGAAACTGGCTAAATCTTCTTTCCATTCTTTTTTCAAATCAGAGTGCCATCCGATTAATTCTTCACGACTACGTTCAATATTTGACAATGCACCACCTCGTCCAGTACGAAAAG-ATGATGGTATTTTACGATTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAACATCTGAAA-CATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATATCATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCTCATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGTTTTAACAATTCAACAGCTTGATTCACTTGTTCTGTATATTCCCAACGAACAGATAAAATGAATTTCGCTAAAGAAGTTTCAGGGAATTTGTCAGCTAAATAAAATCGATACTTCCAGATAAGATCCCCATCTGACTCGGATATATTTAAT-CCCGGTGGTAAATCAAGAACAAGTTTCAATCTATCTAATATGTCTTTATTAGGTTTACGTGCACGATCCACGTCAGCTGTACGAGCATTACGTGTCATTTTAAAGTACTTTTCATCTACAGGATTCCATCGATCAGCTCGTAATTCTGACTGTTCAGGTAGAAATGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAAATTT]

[-] EMBL CD119271             [AACCAAATGATCCTGGCGTAAATCATCACCATGTTTTAAAATAGCTCGATACGTATCGCCATTCGGTTGGATAAAAGTCAGTAATGCAGGTCGTTGAAAACTCTTGAATAGCGTAGCTGTAGACGATTGTACGCCGCATACAATAATATCCGGATTTAGAGGAAGTGGGAATGGTTTATCAATATGCCTAATATGAGCATATTCTTCACTATCCAACTTTGATCTTAACAATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD190139             [                         TCACCATGTTTTAAAATAGCTCGATACGTATCGCCATTCGGTTGGATAAAAGTCAGTAATGCAGGTCGTTGAAAACTCTTGAATAGTGTAGCTGTAGACGATTGTACGCCGCATACAATAATATCCGGATTTAGAGGAAGTGGGAATGGTTTATCAATATGCCTAATATGAGCATATTCTTCACTATCCAACTTTGATCTTAACAATTCAATTTTACGTGAACGATTACCCAAATCATTGGTAACTGATTTTAGCAACCGACATAAATCTTGAATGAATTGTGTTTGTTGTAGTAGTTCTATGTTCCATTTTTGACAAGTAGGACTACCAGCATCAAAAGCATGTAAAAGTCTGTTCAAAACATGTTTATACATCTTTTGAGTATCCGGTGAATTTACTGTATCCTGTTCCGAGAAATCATCTTCACCATCATTACTGTTTGCTTCCAACCGTAGAAACCAATATAGGTAATTTGCAATACGAAAATNTAGTTGAGCACGTCTTATGAGGAAACTGGCTAAATCTTCTTTCCATTCTTTTTTCAAATCAGAGTGCCATCCGATTAATTCTTCACGACTACGTTCAATATTTGACAATGCACCAACTCGTCCAGTACGAAAAGAATGATGGTATTTTACGATTTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AI976685             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGCCATCCGATTAATTCTTCACGACTACGTTCAATATTTGACAATGCACCACCTCGTCCAGTACGAAAAG ATGATGGTATTTTACGATTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAACATCTGAAA CATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATATCATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCTCATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGT                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AW017200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGCCATCCGATTAATTCTTCACGACTACGTTCAATATTTGACAATGCACCACCTCGTCCAGTACGAAAAG ATGATGGTATTTTACGATTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAACATCTGAAA CATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATATCATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCTCATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCA                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BF936712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gacTTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAACATCTGAAACCATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATATCATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCTCATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGTTTTAACAATTCAACAGCTTGATTCACTTGTTCTGTATATTCCCAACGAACAGATAAAATGAATTTCGCTAAAGAAGTTTCAGGGAATTTGTCAGCTAAATAAAATCGATACTTCCAGATAAGATCCCCATCTGACTCGGATATATTTAATCCCCGGTGGTAAATCAAGAACAAGTTTCAATCTATCTAATATGTCTTTATTAGGTTTACGTGCACGATCCACGTCAGCTGTACGAGCATTACGTGTC                                                                                                                                ]
[+] EMBL CD187251             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGTTTTAACAATTCAACAGCTTGATTCACTTGTTCTGTATATTCCCAACGAACAGATAAAATGAATTTCGCTAAAGAAGTTTCAGGGAATTTGTCAGCTAAATAAAATCGATACTTCCAGATAAGATCCCCATCTGACTCGGATATATTTAAT CCCGGTGGTAAATCAAGAACAAGTTTCAATCTATCTAATATGTCTTTATTAGGTTTACGTGCACGATCCACGTCAGCTGTACGAGCATTACGTGTCATTTTAAAGTACTTTTCATCTACAGGATTCCATCGATCAGCTCGTAATTCTGACTGTTCAGGTAGAAATGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAAATTT]




>consensus_8654#0
AACCAAATGATCCTGGCGTAAATCATCACCATGTTTTAAAATAGCTCGATACGTATCGCC
ATTCGGTTGGATAAAAGTCAGTAATGCAGGTCGTTGAAAACTCTTGAATAGCGTAGCTGT
AGACGATTGTACGCCGCATACAATAATATCCGGATTTAGAGGAAGTGGGAATGGTTTATC
AATATGCCTAATATGAGCATATTCTTCACTATCCAACTTTGATCTTAACAATTCAATTTT
ACGTGAACGATTACCCAAATCATTGGTAACTGATTTTAGCAACCGACATAAATCTTGAAT
GAATTGTGTTTGTTGTAGTAGTTCTATGTTCCATTTTTGACAAGTAGGACTACCAGCATC
AAAAGCATGTAAAAGTCTGTTCAAAACATGTTTATACATCTTTTGAGTATCCGGTGAATT
TACTGTATCCTGTTCCGAGAAATCATCTTCACCATCATTACTGTTTGCTTCCAACCGTAG
AAACCAATATAGGTAATTTGCAATACGAAAATNTAGTTGAGCACGTCTTATGAGGAAACT
GGCTAAATCTTCTTTCCATTCTTTTTTCAAATCAGAGTGCCATCCGATTAATTCTTCACG
ACTACGTTCAATATTTGACAATGCACCACCTCGTCCAGTACGAAAAGATGATGGTATTTT
ACGATTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAACATC
TGAAACATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATATCATG
CCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCTCATC
ACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACG
AGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGTTTTAACAATTCAAC
AGCTTGATTCACTTGTTCTGTATATTCCCAACGAACAGATAAAATGAATTTCGCTAAAGA
AGTTTCAGGGAATTTGTCAGCTAAATAAAATCGATACTTCCAGATAAGATCCCCATCTGA
CTCGGATATATTTAATCCCGGTGGTAAATCAAGAACAAGTTTCAATCTATCTAATATGTC
TTTATTAGGTTTACGTGCACGATCCACGTCAGCTGTACGAGCATTACGTGTCATTTTAAA
GTACTTTTCATCTACAGGATTCCATCGATCAGCTCGTAATTCTGACTGTTCAGGTAGAAA
TGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAAATTT

consensusID : consensus_8654#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [ACATAACGAATGCCTTATCTGTCTCTTCCTTGATTTGTTTTAACAATTTTATTTAATTTTAAAAAACACAGTAAAAACTTACTGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAAATTTTACACTGAGAAATAAACGTCCGCTAGCTCGTTTTGCTTCATCAACTGCATGTTCCACATCTGGCATACAATGTCGATCTAATGGTGTTTCTAACAATTCATTACGAAGGTGTTTACGACTCGTCTAATAGAATAGTATGTGTAAAGAAAACCATTAGAAAAGTACGTAAACA]

[+] EMBL CD196147             [ACATAACGAATGCCTTATCTGTCTCTTCCTTGATTTGTTTTAACAATTTTATTTAATTTTAAAAAACACAGTAAAAACTTACTGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAAATTTTACACTGAGAAATAAACGTCCGCTAGCTCGTTTTGCTTCATCAACTGCATGTTCCACATCTGGCATACAATGTCGATCTAATGGTGTTTCTAACAATTCATTACGAAGGTGTTTACGACTCGTCTAATAGAATAGTATGTGTAAAGAAAACCATTAGAAAAGTACGTAAACA]




>consensus_8654#1
ACATAACGAATGCCTTATCTGTCTCTTCCTTGATTTGTTTTAACAATTTTATTTAATTTT
AAAAAACACAGTAAAAACTTACTGGACGCTGAAATATTACAGGCATATACACAGATGGAT
GGCTTCGTGAAAACTCAAATTTTACACTGAGAAATAAACGTCCGCTAGCTCGTTTTGCTT
CATCAACTGCATGTTCCACATCTGGCATACAATGTCGATCTAATGGTGTTTCTAACAATT
CATTACGAAGGTGTTTACGACTCGTCTAATAGAATAGTATGTGTAAAGAAAACCATTAGA
AAAGTACGTAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8654#0      AACCAAATGATCCTGGCGTAAATCATCACCATGTTTTAAAATAGCTCGATACGTATCGCC 60
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      ATTCGGTTGGATAAAAGTCAGTAATGCAGGTCGTTGAAAACTCTTGAATAGCGTAGCTGT 120
consensus_8654#1      ------------------ACATAACGAATGCCTTATCTGTCTCTTCCTTGATTTG--TTT 40
                                           *** * * * * *      *****   *    *   * *

consensus_8654#0      AGACGATTGTACGCCGCATACAATAATA---TCCGGATTTAGAGGAAGTGGGAATGGTTT 177
consensus_8654#1      TAACAATTTTATTTAATTTTAAAAAACACAGTAAAAACTTACTGGACGCTGAAATATTAC 100
                        ** *** **       *  ** ** *   *    * ***  *** *  * ***  *  

consensus_8654#0      ATCAATATGCCTAATATGAGCATATTCTTCACTATCCAACTTTGATCTTAACAATTCAAT 237
consensus_8654#1      AGGCATATACACAG-ATGGATGGCTTCGTGAAAACTCAAATTTTACACTGAGAAATAAAC 159
                      *   **** *  *  ***      *** * *  *  *** *** *   * * ** * ** 

consensus_8654#0      TTTACGTGAACGATTACCCAAATCATTGGTAACTGATTTTAGCAACCGACATA-AATCTT 296
consensus_8654#1      GTCCGCTAGCTCGTTTTGCT--TCATCAACTGCATGTTCCA-CATCTGGCATACAATGTC 216
                       *    *      **   *   ****      *   **  * ** * * **** *** * 

consensus_8654#0      GAATGAATTGTGTTTGTTGTAGTAGTTCTATGTTCCATTTTTGACAAGTAGGACTACCAG 356
consensus_8654#1      GATCTAATGGTGTTT---CTAACAATTCATTACGAAGGTGTTTACGACTCGT-CTAATAG 272
                      **   *** ******    **  * ***  *       * ** ** * * *  ***  **

consensus_8654#0      CATCAAAAGCATGTAAAAGTCTGTTCAAAACATGTTTATACATCTTTTGAGTATCCGGTG 416
consensus_8654#1      AATAGTATGTGTAAAGAAAACCATTAGAAAAGTACGTAAACA------------------ 314
                       **   * *  *  * **  *  **  ***  *   ** ***                  

consensus_8654#0      AATTTACTGTATCCTGTTCCGAGAAATCATCTTCACCATCATTACTGTTTGCTTCCAACC 476
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      GTAGAAACCAATATAGGTAATTTGCAATACGAAAATNTAGTTGAGCACGTCTTATGAGGA 536
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      AACTGGCTAAATCTTCTTTCCATTCTTTTTTCAAATCAGAGTGCCATCCGATTAATTCTT 596
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      CACGACTACGTTCAATATTTGACAATGCACCACCTCGTCCAGTACGAAAAGATGATGGTA 656
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      TTTTACGATTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAA 716
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      CATCTGAAACATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATAT 776
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      CATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCT 836
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      CATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATT 896
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      GACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGTTTTAACAATT 956
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      CAACAGCTTGATTCACTTGTTCTGTATATTCCCAACGAACAGATAAAATGAATTTCGCTA 1016
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      AAGAAGTTTCAGGGAATTTGTCAGCTAAATAAAATCGATACTTCCAGATAAGATCCCCAT 1076
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      CTGACTCGGATATATTTAATCCCGGTGGTAAATCAAGAACAAGTTTCAATCTATCTAATA 1136
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      TGTCTTTATTAGGTTTACGTGCACGATCCACGTCAGCTGTACGAGCATTACGTGTCATTT 1196
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      TAAAGTACTTTTCATCTACAGGATTCCATCGATCAGCTCGTAATTCTGACTGTTCAGGTA 1256
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      GAAATGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAA 1316
consensus_8654#1      ------------------------------------------------------------
                                                                                  

consensus_8654#0      ATTT 1320
consensus_8654#1      ----