cluster # 8657

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Schistosoma mansoni
cluster # 8657 cluster # 8657 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8657#0 length = 727 sequences # 3

consensus_8657#1 length = 515 sequences # 2
consensus_8657#2 length = 485 sequences # 2

consensusID : consensus_8657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 727
fasta sequence

                              [CAGGCCAANAATTTGGCNACGAGGCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAGACTTATGCGTCATCATTCATTTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAAAACCGATTCACGACAAACTGGAAATTCTTTCATTATCACAAGTTCCACCGGAATTTCACGAAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTTGCGCCCACACATTTAGTTGTTTGTCCCCTAGAGCTCGGCACATATGTTTCTTTCTTGACTATATTGGAATATCACTTTATTCTTGTGGCTCCACTGTTTGCTACTATGCGTTTGCTCTGCCAGTCGGCTTGTTGCGTCTTTCACCTATCTCTGGTCTTAATCTTAGTGATATATTCTTGTTTATCTCAACATTGTTTTGTATCTGTGGTACATACTTATCATGTAAGACCAGGTTTTGGAAGCCTTCAATTTTTCGTAACATCATTAGGATGGGAGCATTCGGAATTATTTTGTTNTACGTCGGGAC]

[+] EMBL CD081069             [CAGGCCAANAATTTGGCNACGAGGCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAGACTTATGCGTCATCATTCATTTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAAAACCGATTCACGACAAACTGGAAATTCTTTCATTATCACAAGTTCCACCGGAATTTCACGAAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTTGCGCCCACACATTTAGTTGTTTGTCCCCTAGAGCTCGGCACATATGTTTCTTTCTTGACTATATTGGAATATCACTTTATTCTTGTGGCTCCACTGTTTGCTACTATGCGTTTGCTCTGCCAGTCGGCTTGTTGCGTCTTTCACCTATCTCTGGTCTTAATCTTAGTGATATATTCTTGTTTATCTCAACATTGTTTTGTATCTGTGGTACATACTTATCATGTAAGACCAGGTTTTGGAAGCCTTCAATTTTTCGTAACATCATTAGGATGGGAGCATTCGGAATTATTTTGTTNTACGTCGGGAC]
[-] EMBL CD122346             [                                                                                                                           GTTCTCGGTCATCAAGAAAACCGATTCACGACAAACTGGAAATTCTTTCATTATCACAAGTTCCACCGGAATTTCACGAAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTTGCGCCCACACATTTAGTTGTTTGTCCCCTAGAGCTCGGCACATATGTTTCTTTCTTGACTATATTGGAATATCACTTTATTCTTGTGGCTCCACTGTTTGCTACTATGCGTTTGCTCTGCCAGTCGGCTTGTTGCGTCTTTCACCTATCTCTGGTCTTAATCTTAGTGATATATTCTTGTTTATCTCAACATTGTTTTGTATCTGTGGTACATACTTATCATGTAAGACCAGG                                                                          ]
[-] EMBL CD127276             [                                                                                                                                                                                                                GATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTTGCGCCCACACATTTAGTTGTTTGTCCCCTAGAGCTCGGCACATAT TTTCTTTCTTGACTATATTGGAATATCACTTTATTCTTGTGGCTCCACTGTTTGCTAGTATGCGTTTGCTCTGCCAGTCGGaaagtt                                                                                                                                                                              ]




>consensus_8657#0
CAGGCCAANAATTTGGCNACGAGGCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAA
GACTTATGCGTCATCATTCATTTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTG
GAGGTTCTCGGTCATCAAGAAAACCGATTCACGACAAACTGGAAATTCTTTCATTATCAC
AAGTTCCACCGGAATTTCACGAAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGT
CACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGA
CGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTG
GCGAACGTTTTCTTCTTATATATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTT
GCGCCCACACATTTAGTTGTTTGTCCCCTAGAGCTCGGCACATATGTTTCTTTCTTGACT
ATATTGGAATATCACTTTATTCTTGTGGCTCCACTGTTTGCTACTATGCGTTTGCTCTGC
CAGTCGGCTTGTTGCGTCTTTCACCTATCTCTGGTCTTAATCTTAGTGATATATTCTTGT
TTATCTCAACATTGTTTTGTATCTGTGGTACATACTTATCATGTAAGACCAGGTTTTGGA
AGCCTTCAATTTTTCGTAACATCATTAGGATGGGAGCATTCGGAATTATTTTGTTNTACG
TCGGGAC

consensusID : consensus_8657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 515
fasta sequence

                              [AAATGGTTGGCTGTGGTGGTAGTTTTGTTTTATTCCATCAAGGTTTGCGATATACTCATAAGTCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAAACTTATGCGTCATCATTCATTTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAAAACCGATTCACGACAAACTGGAAATTCTTTCATTATCACAAGTTCCACCGGAATTTCACGAAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTTGCGCCCACACATTTAGTTGTTTGTCCCCTAAAGCTCGGCACATATGTTTCTTTCTT]

[+] EMBL CD122415             [AAATGGTTGGCTGTGGTGGTAGTTTTGTTTTATTCCATCAAGGTTTGCGATATACTCATAAGTCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAAACTTATGCGTCATCATTCATTTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAAAACCGATTCACGACAAACTGGAAATTCTTTCATTATCACAAGTTCCACCGGAATTTCACGAAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTTGCGCCCACACATTTAGTTGTTTGTCCCCTAAAGCTCGGCACATATGTTTCTTTCTT]
[+] EMBL CD167128             [                                                                                                                                                                                       CGATTCACGACAAACTGGTAATTCTTTCATTATCACAAGTTCCACCGGAATGTCACGAAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTATTAC                                                                                     ]




>consensus_8657#1
AAATGGTTGGCTGTGGTGGTAGTTTTGTTTTATTCCATCAAGGTTTGCGATATACTCATA
AGTCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAAACTTATGCGTCATCATTCAT
TTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAA
AACCGATTCACGACAAACTGGAAATTCTTTCATTATCACAAGTTCCACCGGAATTTCACG
AAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGT
CTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTT
ATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATAT
ATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTTGCGCCCACACATTTAGTTGTT
TGTCCCCTAAAGCTCGGCACATATGTTTCTTTCTT

consensusID : consensus_8657#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 485
fasta sequence

                              [AAATGGTTGGCTGTGGTGGTAGTTTTGTTTTATTCCATCAAGGTTTGCGATATACTCATAAGTCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAGACTTATGCGTCATCATTCATTTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAAAACCGATTCACGACAAACTGGAAATTCTTTCACTATCACAAGTTCCACCGGAATTTCACGAAGTCAGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTAATACTGCCGCCACATACCTGTTCACAAGTTCCTGCGAAATATGAGGGGGCCGNGCCGAT]

[+] EMBL CD061066             [AAATGGTTGGCTGTGGTGGTAGTTTTGTTTTATTCCATCAAGGTTTGCGATATACTCATAAGTCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAGACTTATGCGTCATCATTCATTTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAAAACCGATTCACGACAAACTGGAAATTCTTTCACTATCACAAGTTCCACCGGAATTTCACGAAGTCAGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTAATACTGCCGCCACATACCTG                                       ]
[-] EMBL CD060990             [ AATGGTTGGCTGTGGTGGTAGTTTTGTTTTAGTCCATCAAGGTTTGCGATATACTCATAAGTCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAGACTTATGCGTCATCATTCATTTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAAAACCGATTCACGACAAACTGGAAATTCTTTCACTATCACAAGTTCCACCGGAATTTCACGAAGTCAGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGTCTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTTATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATATATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCCTGCGAAATATGAGGGGGCCGNGCCGAT]




>consensus_8657#2
AAATGGTTGGCTGTGGTGGTAGTTTTGTTTTATTCCATCAAGGTTTGCGATATACTCATA
AGTCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAGACTTATGCGTCATCATTCAT
TTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAA
AACCGATTCACGACAAACTGGAAATTCTTTCACTATCACAAGTTCCACCGGAATTTCACG
AAGTCAGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGT
CTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTT
ATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATAT
ATCTTAATACTGCCGCCACATACCTGTTCACAAGTTCCTGCGAAATATGAGGGGGCCGNG
CCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8657#1      AAATGGTTGGCTGTGGTGGTAGTTTTGTTTTATTCCATCAAGGTTTGCGATATACTCATA 60
consensus_8657#2      AAATGGTTGGCTGTGGTGGTAGTTTTGTTTTATTCCATCAAGGTTTGCGATATACTCATA 60
consensus_8657#0      ---------------------------------------CAGGCCAANAATTTGGCNACG 21
                                                              ***      ** *    *  

consensus_8657#1      AGTCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAAACTTATGCGTCATCATTCAT 120
consensus_8657#2      AGTCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAGACTTATGCGTCATCATTCAT 120
consensus_8657#0      AGGCCTGACTTACAAAACAGTCTTTTTAAAAATTTATAAGACTTATGCGTCATCATTCAT 81
                      ** ************************************ ********************

consensus_8657#1      TTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAA 180
consensus_8657#2      TTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAA 180
consensus_8657#0      TTACAAGTGACGACGAAAATGCCAGTCACAGGGGTCCTGGAGGTTCTCGGTCATCAAGAA 141
                      ************************************************************

consensus_8657#1      AACCGATTCACGACAAACTGGAAATTCTTTCATTATCACAAGTTCCACCGGAATTTCACG 240
consensus_8657#2      AACCGATTCACGACAAACTGGAAATTCTTTCACTATCACAAGTTCCACCGGAATTTCACG 240
consensus_8657#0      AACCGATTCACGACAAACTGGAAATTCTTTCATTATCACAAGTTCCACCGGAATTTCACG 201
                      ******************************** ***************************

consensus_8657#1      AAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGT 300
consensus_8657#2      AAGTCAGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGT 300
consensus_8657#0      AAGTCGGGATTTTATCAGGTTATCGCAAGCCATCAGCGTCACTTGCATTGGGTATCTTGT 261
                      ***** ******************************************************

consensus_8657#1      CTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTT 360
consensus_8657#2      CTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTT 360
consensus_8657#0      CTGTTTTTCAAATACACAATGAAACTTTGAATATATGGACGCAAATCATACCAACCATTT 321
                      ************************************************************

consensus_8657#1      ATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATAT 420
consensus_8657#2      ATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATAT 420
consensus_8657#0      ATTTTGTTGTCGAACTAGTCCTGAATTTTTTCCACGTTGGCGAACGTTTTCTTCTTATAT 381
                      ************************************************************

consensus_8657#1      ATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTTGCGCCCACACATTTAGTTGTT 480
consensus_8657#2      ATCTTAATACTGCCGCCACATACCTGTTCACAAGTTCCTGCG---AAATATGAGGGGGCC 477
consensus_8657#0      ATCTTATTACTGCCGTCACATACCTGTTCACAAGTTCTTGCGCCCACACATTTAGTTGTT 441
                      ****** ******** ********************* ****   * * **   *  *  

consensus_8657#1      TGTCCCCTAAAGCTCGGCACATATGTTTCTTTCTT------------------------- 515
consensus_8657#2      GNGCCGAT---------------------------------------------------- 485
consensus_8657#0      TGTCCCCTAGAGCTCGGCACATATGTTTCTTTCTTGACTATATTGGAATATCACTTTATT 501
                         **  *                                                    

consensus_8657#1      ------------------------------------------------------------
consensus_8657#2      ------------------------------------------------------------
consensus_8657#0      CTTGTGGCTCCACTGTTTGCTACTATGCGTTTGCTCTGCCAGTCGGCTTGTTGCGTCTTT 561
                                                                                  

consensus_8657#1      ------------------------------------------------------------
consensus_8657#2      ------------------------------------------------------------
consensus_8657#0      CACCTATCTCTGGTCTTAATCTTAGTGATATATTCTTGTTTATCTCAACATTGTTTTGTA 621
                                                                                  

consensus_8657#1      ------------------------------------------------------------
consensus_8657#2      ------------------------------------------------------------
consensus_8657#0      TCTGTGGTACATACTTATCATGTAAGACCAGGTTTTGGAAGCCTTCAATTTTTCGTAACA 681
                                                                                  

consensus_8657#1      ----------------------------------------------
consensus_8657#2      ----------------------------------------------
consensus_8657#0      TCATTAGGATGGGAGCATTCGGAATTATTTTGTTNTACGTCGGGAC 727