These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1021 fasta sequence [CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGTAGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGTCGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAATCAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCGTTTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGGTGTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAAGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATACATCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGTTCCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTCTG] [+] EMBL CD127663 [CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGTAGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGTCGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAATCAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGA ] [+] EMBL CD128139 [ GTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGTAGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGTCGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAATCAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGAT ] [+] EMBL CD127654 [ gctAAAACTTGCATAATGAAGATACCGACCTTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTAGATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGAT ] [+] EMBL CD095757 [ CTTTGGTGATGATGATTTAGATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCGTTTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGGTGTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAAGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAATA ] [+] EMBL CD199538 [ GTGGAAGCAATTCAACTCGTTTGGGATCTGGTGTAAATTTTGTTTATTCTTCAAATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAAGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAAT ] [+] EMBL CD062525 [ cTTA TGCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATACATCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGTTCCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTCTG] consensusID : consensus_8661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [TTGCNCGCAGGGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTTTTTGTCGAGTAGTTGCTCCACCTTTGAATGTGGATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGA] [+] EMBL CD061076 [TTGCNCGCAGGGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTTTTTGTCGAGTAGTTGCTCCACCTTTGAATGTGGATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8661#0 CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGT 60 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 AGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGT 120 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 CGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAAT 180 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 CAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTA 240 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 CTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACA 300 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 TATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATA 360 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 CCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCT 420 consensus_8661#1 ----------------------------TTGCNCGCAGGGGAAACCATTCAGTTGCAGCT 32 ** ********************* consensus_8661#0 GTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTA-ATCTCATCTAA 479 consensus_8661#1 GTGGTCGAAGAGACTTTTTGTCGAGTAGTTGCTCCACCTTTGAATGTGGATCTCATCTAA 92 *************** ** **************************** *********** consensus_8661#0 TGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTC 539 consensus_8661#1 TGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTC 152 ************************************************************ consensus_8661#0 TTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGG 599 consensus_8661#1 TTCTACCGGTAACTGGGA------------------------------------------ 170 ****************** consensus_8661#0 TTCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCG 659 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 TTTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGG 719 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 TGTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCA 779 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 AGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCAC 839 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 TGGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATAC 899 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 ATCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGT 959 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 TCCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTC 1019 consensus_8661#1 ------------------------------------------------------------ consensus_8661#0 TG 1021 consensus_8661#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||