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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1021 fasta sequence
[CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGTAGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGTCGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAATCAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCGTTTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGGTGTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAAGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATACATCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGTTCCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTCTG]
[+] EMBL CD127663 [CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGTAGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGTCGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAATCAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGA ]
[+] EMBL CD128139 [ GTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGTAGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGTCGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAATCAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGAT ]
[+] EMBL CD127654 [ gctAAAACTTGCATAATGAAGATACCGACCTTGTACTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTAGATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGAT ]
[+] EMBL CD095757 [ CTTTGGTGATGATGATTTAGATACATATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATACCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTAATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGGTTCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCGTTTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGGTGTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAAGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAATA ]
[+] EMBL CD199538 [ GTGGAAGCAATTCAACTCGTTTGGGATCTGGTGTAAATTTTGTTTATTCTTCAAATAATCAGACAGGTCTTAATACTTCTCAATCTATTCAAGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAAT ]
[+] EMBL CD062525 [ cTTA TGCAGGTACCGATGACCACTGGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATACATCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGTTCCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTCTG]
consensusID : consensus_8661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence
[TTGCNCGCAGGGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTTTTTGTCGAGTAGTTGCTCCACCTTTGAATGTGGATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGA]
[+] EMBL CD061076 [TTGCNCGCAGGGGAAACCATTCAGTTGCAGCTGTGGTCGAAGAGACTTTTTGTCGAGTAGTTGCTCCACCTTTGAATGTGGATCTCATCTAATGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTCTTCTACCGGTAACTGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8661#0 CAATAGGTAGGTGATGTTGATGTTAGCGGTGAAGATGAAGAGGTTGCCTTTGTTCTTAGT 60
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 AGAAGTCGCAGACATGAGAACCGTACTCGACCTTCTGGTTTGTCTAGTCCACGTCGTCGT 120
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 CGACCGAATGCTTCCATTTCTGTTACTGTTACTACCAATCGGACCAACAGTGATCGCAAT 180
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 CAGAATACTGAGTCTCATGACGATGGTGAAAACTTGCATAATGAAGATACCGATATTGTA 240
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 CTTCATGACGATACGCATGTGGAGGATGATGGGAGCTTTGGTGATGATGATTTANATACA 300
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 TATGGTAGAGATGATGACGATACTCCTCGAGATGATGTGGCGATTATTTCTTCCGATATA 360
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 CCTGGTGTTATCTTTCCTAATGAAAACCGTGGGTCTCATGGAAACCATTCAGTTGCAGCT 420
consensus_8661#1 ----------------------------TTGCNCGCAGGGGAAACCATTCAGTTGCAGCT 32
** *********************
consensus_8661#0 GTGGTCGAAGAGACTCTTCGTCGAGTAGTTGCTCCACCTTTGAATGTA-ATCTCATCTAA 479
consensus_8661#1 GTGGTCGAAGAGACTTTTTGTCGAGTAGTTGCTCCACCTTTGAATGTGGATCTCATCTAA 92
*************** ** **************************** ***********
consensus_8661#0 TGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTC 539
consensus_8661#1 TGGTTTTAGAGATCTTGGAACAAATAGTTTGTCAACCTTAAATGTTCATTCGCGAGGTTC 152
************************************************************
consensus_8661#0 TTCTACCGGTAACTGGGATTATCTTCTGCCTGCTTTTACAAATTTAATTGCTCGTCATGG 599
consensus_8661#1 TTCTACCGGTAACTGGGA------------------------------------------ 170
******************
consensus_8661#0 TTCTCGACACATTCCATTTGATGGTGAATCTAACCTACCAACAAGTACTACTATATTCCG 659
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 TTTCGGTCCTGAAGCATCAGTATTTGTAGGTGGAAGCAATTCAACTCGTTTGGGATCTGG 719
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 TGTAAATTTTGTTTATTCTTCANATAATCAGACAGGTCTTAATACTTCTCAATCTATTCA 779
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 AGCAGTACCAGCTGCAACCCTGGCAAATCAGCATCCTTTACTTCAGGTACCGATGACCAC 839
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 TGGAACTAATGTTGGTCTTTCAACAAATAACACAAACACTGGGACATCCAGTCACAATAC 899
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 ATCAACCAATAACGTTAGTGGCTTACGTGTATTTGGCGTTCTGCCGCGACCACAACACGT 959
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 TCCTCCTCATTATGGTACACGTCATCGGATTACAGGTTCATCTGGACCACATCTTTCCTC 1019
consensus_8661#1 ------------------------------------------------------------
consensus_8661#0 TG 1021
consensus_8661#1 --
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||