cluster # 8662

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Schistosoma mansoni
cluster # 8662 cluster # 8662 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8662#0 length = 510 sequences # 4

consensus_8662#1 length = 365 sequences # 2
consensus_8662#2 length = 275 sequences # 1

consensusID : consensus_8662#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 510
fasta sequence

                              [ATGTGTGCGACCAAGTGGCCGTTTACAATTTAGATTGCTATTTATACCTGACGTATAGGGAACATGTTCT-AAACTCTTATTTCCAAGGTTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGACGTTAAGAGTGTGGTCAGGCAGATAAATTTTATGACCAGTTTTCCAGTTATCCGTTGCACAGTCACTATAACTGGTTTTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATCAGTACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGATGGGCATCACCTACATTGGGACTACTTTCTTTTGGGCTTTGAACATTAGGAGATTCAGGAGAGTTTTCCGGTGGTTGCATATTCGTAAAGTTAGATGTCCGCTTAGGATCGGACTTAATTTTATGACCTTTAGGATTATGATACGCTTGGGTGCTTGATGCTGG]

[+] EMBL CD160041             [ATGTGTGCGACCAAGTGGCCGTTTACAATTTAGATTGCTATTTATACCTGACGTATAGGGAACATGTTCT AAACTCTTATTTCCAAGGTTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGGGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGACGTTAAGAGTGTGGTCAGGCAGATAAATTTTATGACCAGTTTTCCAGTTATCCGTTGCACAGTCACTATAACTGGTTTTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATCAGTACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGATGGGCATCACCTACATTGGGACTACTTTCTTTTGGGCTTTGAACATTAGGAGACTCAGGAGAGTTTTCCGGTGGTTGCATATTCGTAAAGTTAGATGTCCGCTTg                                                           ]
[+] EMBL CD177760             [ATGTGTGCGAACAAGTGGCCGTTTACAATTTAGACTGCTATTTATACCTGACGTATAGGGAACATGTTCTAAAACGCTTATTTCCAAAGTTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGAAGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGACGTTAAGcg                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD191456             [                                                                                                       TGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGACGTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTTCCCGTTATCCGTTGCACAGTCACTGTAACTGGTTGTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATCAATACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGAAGGGCATCACCTACATTGGGACTACTTTCTTTTGGGCTTTGAACTTTAGGAGATTCAGGAGAGTTTTTCGGTGGTTGCATATTCGTAAAGTTAGATGTCCGCTTAGGATCGGACTTAATTTTATGACCTTTAGGATTATGATACGCTTGGGTGCTTGATGC   ]
[+] EMBL CD180267             [                                                                                                                                                                                    CGTTAAGAGTGTGGTCAGGCAGATAAATTTTATGACCAGTTCTCCAGTTATCCGTTGCACAGTCACTATAACTGGTTTTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATCAGTACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGATGGGCATCACCTACATTGGGACTACTTTCTTTTGGGCTTTGAACATTAGGAGATTCAGGAGAGTTTTCCGGTGGTTGCATATTCGTAAAGTTAGATGTCCGCTTAAGATCGGACTTAATTTAATGACCTTTAGGATTATGATACGCTTGGGTGTTTGATGCTGG]




>consensus_8662#0
ATGTGTGCGACCAAGTGGCCGTTTACAATTTAGATTGCTATTTATACCTGACGTATAGGG
AACATGTTCTAAACTCTTATTTCCAAGGTTTGTGGTTGATTTTGGCTCCTTCGTAATTTG
AGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGAC
GTTAAGAGTGTGGTCAGGCAGATAAATTTTATGACCAGTTTTCCAGTTATCCGTTGCACA
GTCACTATAACTGGTTTTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATC
AGTACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGATGGGCATCACCTAC
ATTGGGACTACTTTCTTTTGGGCTTTGAACATTAGGAGATTCAGGAGAGTTTTCCGGTGG
TTGCATATTCGTAAAGTTAGATGTCCGCTTAGGATCGGACTTAATTTTATGACCTTTAGG
ATTATGATACGCTTGGGTGCTTGATGCTGG

consensusID : consensus_8662#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 365
fasta sequence

                              [CAATTGGCCGTTTACAATTTAAATTGCTATTTATACCTGACGTATAGGGAACATGTTCTAAACGCTTATTACCAAGGGTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTAGCAAGGTTCAAGTTTATTGACGTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTCCCCGTTATCCGTTGCACAGTCACTGTAACTGGTTGTTACACTAACAGCGATTTAGACTGTGTCATCACATTCGTAATCAGTACAACTACTTGGAGTTGAATCTAAGTGAACATTCTTAAAAGGATGGGCATCACCTAACATTGAGACTACTTTC]

[+] EMBL CD061092             [CAATTGGCCGTTTACAATTTAAATTGCTATTTATACCTGACGTATAGGGAACATGTTCTAAACGCTTATTACCAAGGGTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTAGCAAGGTTCAAGTTTATTGACGTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTCCCCGTTATCCGTTGCACAGTCACTGTAACTGGTTGTTACACTAACAGCGATTTAGACTGTGTCATCACATTCGTAATCAGTACAACTACTTGGAGTTGAATCTAAGTGAACATTCTTAAAAGGATGGGCATCACCTAACATTGAGACTACTTTC]
[+] EMBL CD195772             [                                                                                    TTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTAGCAAGGTTCGAGTTTATCGACGTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTCCCCGTTATCCGTTGCACAGTCACTGT                                                                                                                                ]




>consensus_8662#1
CAATTGGCCGTTTACAATTTAAATTGCTATTTATACCTGACGTATAGGGAACATGTTCTA
AACGCTTATTACCAAGGGTTGTGGTTGATTTTGGCTCCTTCGTAATTTGAGGAGGGTCGT
GTGTTGTTAAAGATGCTTGAGATGGTTAGCAAGGTTCAAGTTTATTGACGTTAAGCGTGT
GGTCAGGCAGATAATTTTTATGACCAGTTTCCCCGTTATCCGTTGCACAGTCACTGTAAC
TGGTTGTTACACTAACAGCGATTTAGACTGTGTCATCACATTCGTAATCAGTACAACTAC
TTGGAGTTGAATCTAAGTGAACATTCTTAAAAGGATGGGCATCACCTAACATTGAGACTA
CTTTC

consensusID : consensus_8662#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [AATATGCAACCACCGAAAAACTCTCCTGAATCTCCTAAAGTTCAAAACCCAAAAGAAAGTAGTCCCAATGTAGGTGATATGCATGCTTATTACGTTAGAGTCCTGTGATAACGGTAGTTTACACGTGAAGCTCGTGTGACAATTGAGGTTTGAAACCGTGAGGTACTGGCAGATCTGCGGAGAACATATTTACAATACACTGTTGTATTTTATTGGAATTTAAAATCTGAGCATGCTTAATAAAATACAGCGTTTAAAAATTAACGCTTGCAAAT]

[+] EMBL CD078032             [AATATGCAACCACCGAAAAACTCTCCTGAATCTCCTAAAGTTCAAAACCCAAAAGAAAGTAGTCCCAATGTAGGTGATATGCATGCTTATTACGTTAGAGTCCTGTGATAACGGTAGTTTACACGTGAAGCTCGTGTGACAATTGAGGTTTGAAACCGTGAGGTACTGGCAGATCTGCGGAGAACATATTTACAATACACTGTTGTATTTTATTGGAATTTAAAATCTGAGCATGCTTAATAAAATACAGCGTTTAAAAATTAACGCTTGCAAAT]




>consensus_8662#2
AATATGCAACCACCGAAAAACTCTCCTGAATCTCCTAAAGTTCAAAACCCAAAAGAAAGT
AGTCCCAATGTAGGTGATATGCATGCTTATTACGTTAGAGTCCTGTGATAACGGTAGTTT
ACACGTGAAGCTCGTGTGACAATTGAGGTTTGAAACCGTGAGGTACTGGCAGATCTGCGG
AGAACATATTTACAATACACTGTTGTATTTTATTGGAATTTAAAATCTGAGCATGCTTAA
TAAAATACAGCGTTTAAAAATTAACGCTTGCAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8662#0      ATGTGTGCGACCAAGTGGCCGTTTACAATTTAGATTGCTATTTATACCTGACGTATAGGG 60
consensus_8662#1      -----------CAATTGGCCGTTTACAATTTAAATTGCTATTTATACCTGACGTATAGGG 49
consensus_8662#2      ------------------------------------------------------------
                                                                                  

consensus_8662#0      AACATGTTCTAAACTCTTATTTCCAAGGTTTGTGGTTGATTTTGGCTCCTTCGTAATTTG 120
consensus_8662#1      AACATGTTCTAAACGCTTATTACCAAGGGTTGTGGTTGATTTTGGCTCCTTCGTAATTTG 109
consensus_8662#2      --------------------------AATATGCAACCACCGAAAAACTCTCCTGAATCTC 34
                                                    **                ** *  *** * 

consensus_8662#0      AGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTTGCTAGGTTCGAGTATATCGAC 180
consensus_8662#1      AGGAGGGTCGTGTGTTGTTAAAGATGCTTGAGATGGTTAGCAAGGTTCAAGTTTATTGAC 169
consensus_8662#2      CTAAAGTTCAAAACCCAAAAGAAAGTAGTCCCAATGTAGGTGATATGCATGCTTATT-AC 93
                         * * **          * * *    *   *  **  *  *  * *  *  ***  **

consensus_8662#0      GTTAAGAGTGTGGTCAGGCAGATAAATTTTATGACCAGTTTTCCAGTTATCCGTTGCACA 240
consensus_8662#1      GTTAAGCGTGTGGTCAGGCAGATAATTTTTATGACCAGTTTCCCCGTTATCCGTTGCACA 229
consensus_8662#2      GTTA-GAGTCCTGTGATAACGGTAGTTTACACGTGAAGCTCGTGTGACAATTGAGGT--- 149
                      **** * **   ** *    * **  **  * *   ** *     *  *   *  *    

consensus_8662#0      GTCACTATAACTGGTTTTTGCACTAACAGCGACTTGGACTGTGTTATCCCATTCGAAATC 300
consensus_8662#1      GTCACTGTAACTGGTTGTTACACTAACAGCGATTTAGACTGTGTCATCACATTCGTAATC 289
consensus_8662#2      ----TTGAAACCG--TGAGGTACTGGCAGATCTGCGGAGAACATATTTACAAT--ACACT 201
                           *  *** *  *     ***  ***       **     *  *  ** *    *  

consensus_8662#0      AGTACAACTACTTAGGGTTGAATCTAAGTCAACATTCTTAAAAGGATGGGCATCACCTA- 359
consensus_8662#1      AGTACAACTACTTGGAGTTGAATCTAAGTGAACATTCTTAAAAGGATGGGCATCACCTAA 349
consensus_8662#2      GTTGTATTTTATTGGAATTTAAAAT--CTGAGCATGCTTAATAAAAT--ACAGCGTTTAA 257
                        *  *  *  ** *  ** **  *   * * *** ***** *  **   ** *   ** 

consensus_8662#0      CATTGGGACTACTTTCTTTTGGGCTTTGAACATTAGGAGATTCAGGAGAGTTTTCCGGTG 419
consensus_8662#1      CATTGAGACTACTTTC-------------------------------------------- 365
consensus_8662#2      AAATTAA--CGCTTGCAAAT---------------------------------------- 275
                       * *       *** *                                            

consensus_8662#0      GTTGCATATTCGTAAAGTTAGATGTCCGCTTAGGATCGGACTTAATTTTATGACCTTTAG 479
consensus_8662#1      ------------------------------------------------------------
consensus_8662#2      ------------------------------------------------------------
                                                                                  

consensus_8662#0      GATTATGATACGCTTGGGTGCTTGATGCTGG 510
consensus_8662#1      -------------------------------
consensus_8662#2      -------------------------------