cluster # 8664

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Schistosoma mansoni
cluster # 8664 cluster # 8664 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8664#0 length = 955 sequences # 6

consensus_8664#1 length = 168 sequences # 1

consensusID : consensus_8664#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 955
fasta sequence

                              [AGAAATGTTTGGGAAAATCCTAACATCATTATAAATACGCGTGCGTCACCTAAATTGAGCAAAAGCAAAAACCTTATCATACATGATCACAAATATAAACAATTAAGTTAGTAAGTAGGTAAGCTAGACGAACATGAAGACTGATGGGAAGTAAATAAATAAACACTAACAAACAAGAACTGATAAAGTAAGTTGGTCAAAACGATACAAACAGTTTTCACAGCTGAGTACAACATATTAAATGAGGAGTACAACAGAGGATCGAAAGCCCGTATATTGCTGTCTATCAATTGAAACTAACAGCAAAATGCAGCAATAAACCGTCGGATTGTTGCCGCATGAAACGAGATCACATTATTGCACATTTCACAAAATACTTTCTAAATGAGCTGCCACGTTAAGTTCCTCTTCAAATATCCAGGTAGGTGGAATAACACTATGTCCAGACCCGCTAATCCAGCGTACGAGAAATTCACACCGATGATCCAGAGAAATACGTTGACCAACAAACGTATGAGGAGTCGTCAACAGCAATGATATGTGCTGATGAATATCTTTTGTATGCCTCAGCAATGATGGTAGGGCCAATTCTTTACTGACCGTGATATTTGGTGGGTTAACATTGGGACGTGCAGGCGGATTAGTAGATTTTTCATAAAGTTTCAAAGGTAATTTGCAAAAATCCAGTGGTAAAATGCGAGACCGTTCACGATTATTTTTTGTTGTGAGCTCCTTGTTAAGAAGATAAGAAATTTTTAACTTGTTTTTAACTAGTATTTGACTTCTATAATCATAAAAATCCAAGCGACGAACTCGGTAAGTTCGCGCTTTCTTACGTTTGCGTAAATTTTTTTTGGTAGACAGAGAAGTAGATTTCTTTAATGAATTTTGTAAATTAGTTATTTCTTCTGAATGTGATTGACAAATTATGCTCTTGTCAGTTAGAGATACTTTG]

[+] EMBL CD145155             [AGAAATGTTTGGGAAAATCCTAACATCATTATAAATACGCGTGCGTCACCTAAATTGAGCAAAAGCAAAAACCTTATCATACATGATCACAAATATAAACAATTAAGTTAGTAAGTAGGTAAGCTAGACGAACATGAAGACTGATGGGAAGTAAATAAATAAACACTAACAAACAAGAACTGATAAAGTAAGTTGGTCAAAACGATACAAACAGTTTTCACAGCTGAGTACAACATATTAAATGAGGAGTACAACAGAGGATCGAAAGCCCGTATATTGCTGTCTATCAATTGAAACTAACAGCAAAATGCAGCAATAAACCGTCGGATTGTTGCCGCATGAAACGAGATCACATTATTGCACATTTCACAAAATACTTTCTAAATGAGCTGCCACGTTAAGTTCCTCTTCAAATATCCAGGTAGGTGGAATAACACTATGTCCAGACCCGCTAATCCAGCGTACGAGAAATTCACACCAATGATCCAGAGAAATACGTTGACCAACAAACGTATGAGGAGTCGTCAACAGCAATGATATGTGCTGATGAATATCTTTTGTATGCCTCAGCANTGATGGTAGGGCCAATTCT                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD145296             [AGAAATGTTTGGGAAAATCCTAACATCATTATAAATACGCGTGCGTCACCTAAATTGAGCAAGAGCAAAAACCTTATCATACATGATCACAAATATAAACAATTAAGTTAGTAAGTAGGTAAGCTAGACGAACATGAAGACTGATGGGAAGTAAATAAATAAACACTAACAAACAAGAACTGATAAAGTAAGTTGGTCAAAACGATACAAACAGTTTTCACAGCTGAGTACAACATATTAAATGAGGAGTACAACAGAGGATCGAAAGCCCGTATATTGCTGACTGTCAATTGAAACTAACAGCAAAATGCAGCAATAAACCGTCGGATTGTTGCCGCATGAAACGAGATCACATTATTGCACATTTCACAAAATACTTTCTAAATGAGCTGCCACGTTAAGTTCCTCTTCAAATATCCAGGTAGGTGGAATAACACTATGTCCAGACCCGCTAATCCAGCGTACGAGAAATTCACACCGATGATCCAGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD145325             [AGAAATGTTTGGGAAAATCCTAACATCATTATAAGTACGCGTGCGTCACCTAAATTGAGCAAAAGCAAAAACCTTATCATACATGATCACAAATATAAACAATTAAGTTAGTAAGTAGGTAAGCTAGACGAACATGAAGACTGATGGGAAGTAAATAAATAAACACTAACAAACAAGAACTGATAAAGTAAGTTGGTCAAAACGATACAAACAGTTTTCACAGCTGAGTACAACATATTAAATGAGGAGTACAACAGAGGATCGAAAGCCCGTATATTGCTGTCTATCAATTGAAACTAACAGCAAAATGCAGCAATAAACCGTCGGATTGTTGCCGCATGAAACGAGATCACATTATTGCACATTTCACAAAATACTTTCTAAATGAGCTGCCACGTTAAGTTCCTCTTCAAATATCCAGGTAGGTGGAATAACACTATGTCCAGACCCGCTAATtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD145192             [                                                                                                                                                                                                                                                                                               CAATTGAACNTAACAGCANAATGCAGCAATAAACCGTCGGATTGTTGCCGCATGAAACGAGATCACATTATTGCACATTTCACAAAATACTTTCTAAATGAGCTGCCACGTTAAGTTCCTCTTCAAATATCCAGGTAGGTGGAATAACACTATGTCCAGACCCGCTAATCCAGCGTACGAGAAATTCACACCGATGATCCAGAGAAATACGTTGACCAACAAACGTATGAGGAGTCGTCAACAGCAATGATATGTGCTGATGAATATCTTTTGTATGCCTCAGCAATGATGGTAGGGCCAATTCTTTACTGACCGTGATATTTGGTGGGTTAACATTGGGACGTGCAGGCGGATTAGTAGATTTTTCATAAAGTTTCAAAGGTAATTTGCAAAAATCCAGTGGTAAAATGCGAGACCGTTCACGATTATTTTTTGTTGTGAGCTCCTTGTTAAGAAGATAAGAAATTTTTAACTTGTTTTTAACTAGTATTTGACTTCTATAATCATAAAAATCCAAGCGACGAACTCGGTAAGTTCGCGCTTTCTTACGTTTGCGTAAA                                                                                                            ]
[-] EMBL CD145312             [                                                                                                                                                                                                                                                                                                                                                      AACGAGATCACANTATTGCACATTTCACAAAATACTTTCTAAATGAACTGCCACGTTAAGTTCCTCTTCAAATATCCAGGTAGGTGGAATAACACTATGTCCAGACCCGCTAATCCAGCGTACGAGAAATTCACACCGATGATCCAGAGAAATACGTTGACCAACAAACGTATGAGGAGTCGTCAACAGCAATGATATGTGCTGATGAATATCTTTTGTATGCCTCAGCAATGATGGTAGGGCCAATTCTTTACTGACCGTGATATTTGGTGGGTTAACATTGGGACGTGCAGGCGGATTAGTAGATTTTTCATAAAGTCTCAAAGGTAATTTGCAAAAATCCAGTGGTAAAATGCGAGACCGTTCACGATTATTTTTTGTTGTGAGCTCCTTGTTAAGAAGATAAGAAATTTTTAACTTGTTTTTAACTAGTATTTGACTTCTATAATCATAAAAATCCAAGCGACGAACTCGGTAAGTTCGCGCTTTCTTACGTTTGCGTAAA                                                                                                            ]
[+] EMBL CD194306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCTTTACTGACCGTGATATTTGGTGGGTTAACATTGGGACGTGCAGGCGGATTAGTAGATTTTTCATAAAGTTTCAAAGGTAATTTGCAAAAATCCAGTGGTAAAATGCGAGACCGTTCACGATTATTTTTTGTTGTGAGCTCCTTGTTAAGAAGATAAGAAATTTTTAACTTGTTTTTAACTAGTATTTGACTTCTATAATCATAAAAATCCAAGCGACGAACTCGGTAAGTTCGCGCTTTCTTACGTTTGCGTAAATTTTTTTTGGTAGACAGAGAAGTAGATTTCTTTAATGAATTTTGTAAATTAGTTATTTCTTCTGAATGTGATTGACAAATTATGCTCTTGTCAGTTAGAGATACTTTG]




>consensus_8664#0
AGAAATGTTTGGGAAAATCCTAACATCATTATAAATACGCGTGCGTCACCTAAATTGAGC
AAAAGCAAAAACCTTATCATACATGATCACAAATATAAACAATTAAGTTAGTAAGTAGGT
AAGCTAGACGAACATGAAGACTGATGGGAAGTAAATAAATAAACACTAACAAACAAGAAC
TGATAAAGTAAGTTGGTCAAAACGATACAAACAGTTTTCACAGCTGAGTACAACATATTA
AATGAGGAGTACAACAGAGGATCGAAAGCCCGTATATTGCTGTCTATCAATTGAAACTAA
CAGCAAAATGCAGCAATAAACCGTCGGATTGTTGCCGCATGAAACGAGATCACATTATTG
CACATTTCACAAAATACTTTCTAAATGAGCTGCCACGTTAAGTTCCTCTTCAAATATCCA
GGTAGGTGGAATAACACTATGTCCAGACCCGCTAATCCAGCGTACGAGAAATTCACACCG
ATGATCCAGAGAAATACGTTGACCAACAAACGTATGAGGAGTCGTCAACAGCAATGATAT
GTGCTGATGAATATCTTTTGTATGCCTCAGCAATGATGGTAGGGCCAATTCTTTACTGAC
CGTGATATTTGGTGGGTTAACATTGGGACGTGCAGGCGGATTAGTAGATTTTTCATAAAG
TTTCAAAGGTAATTTGCAAAAATCCAGTGGTAAAATGCGAGACCGTTCACGATTATTTTT
TGTTGTGAGCTCCTTGTTAAGAAGATAAGAAATTTTTAACTTGTTTTTAACTAGTATTTG
ACTTCTATAATCATAAAAATCCAAGCGACGAACTCGGTAAGTTCGCGCTTTCTTACGTTT
GCGTAAATTTTTTTTGGTAGACAGAGAAGTAGATTTCTTTAATGAATTTTGTAAATTAGT
TATTTCTTCTGAATGTGATTGACAAATTATGCTCTTGTCAGTTAGAGATACTTTG

consensusID : consensus_8664#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [TACTAATAATTTACATCTCCAAATGATTTCCAAATTCATTTTGACCATTCTTTGTGAATGANGTAATAAATACGTTCGTNGCAAGGATTTTNATGATTATAGAAGTCAAATACTAGTTAAAAACAAGTTAAAAATTTCTNATCTTCTTAACAAGGAGCTCACAACAAA]

[+] EMBL AA819928             [TACTAATAATTTACATCTCCAAATGATTTCCAAATTCATTTTGACCATTCTTTGTGAATGANGTAATAAATACGTTCGTNGCAAGGATTTTNATGATTATAGAAGTCAAATACTAGTTAAAAACAAGTTAAAAATTTCTNATCTTCTTAACAAGGAGCTCACAACAAA]




>consensus_8664#1
TACTAATAATTTACATCTCCAAATGATTTCCAAATTCATTTTGACCATTCTTTGTGAATG
ANGTAATAAATACGTTCGTNGCAAGGATTTTNATGATTATAGAAGTCAAATACTAGTTAA
AAACAAGTTAAAAATTTCTNATCTTCTTAACAAGGAGCTCACAACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8664#0      AGAAATGTTTGGGAAAATCCTAACATCATTATAAATACGCGTGCGTCACCTAAATTGAGC 60
consensus_8664#1      ----------------------------------------------TACTAATAATTTAC 14
                                                                     **  * * *   *

consensus_8664#0      AAAAGCAAA-AACCTTATCATACATGATCACAAATATAAACAATTAAGTTAGTAAGTAGG 119
consensus_8664#1      ATCTCCAAATGATTTCCAAATTCATTTTGACCATTCTTTGTGAATGANGTAATAAATACG 74
                      *    ****  *  *    ** ***  * ** * * *     * * *  ** *** ** *

consensus_8664#0      TAAGCTAGACGAACATGAAGACTGATGGGAAGTAAATAAATAAACACTAACAAACAAGAA 179
consensus_8664#1      TTCGTNGCAAGGATTTTNATGATTATAGAAGTCAAATAC-TAGTTAAAAACAAGTTAAAA 133
                      *  *    * * *  *  *   * ** * *   *****  **   *  *****   * **

consensus_8664#0      CTGATAAAGTAAGTTGGTCAAAACGATACAAACAGTTTTCACAGCTGAGTACAACATATT 239
consensus_8664#1      ATTTCTNATCTTCTTAACAAGGAGCTCACAACAAA------------------------- 168
                       *     *     **    *  *    ****  *                          

consensus_8664#0      AAATGAGGAGTACAACAGAGGATCGAAAGCCCGTATATTGCTGTCTATCAATTGAAACTA 299
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      ACAGCAAAATGCAGCAATAAACCGTCGGATTGTTGCCGCATGAAACGAGATCACATTATT 359
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      GCACATTTCACAAAATACTTTCTAAATGAGCTGCCACGTTAAGTTCCTCTTCAAATATCC 419
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      AGGTAGGTGGAATAACACTATGTCCAGACCCGCTAATCCAGCGTACGAGAAATTCACACC 479
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      GATGATCCAGAGAAATACGTTGACCAACAAACGTATGAGGAGTCGTCAACAGCAATGATA 539
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      TGTGCTGATGAATATCTTTTGTATGCCTCAGCAATGATGGTAGGGCCAATTCTTTACTGA 599
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      CCGTGATATTTGGTGGGTTAACATTGGGACGTGCAGGCGGATTAGTAGATTTTTCATAAA 659
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      GTTTCAAAGGTAATTTGCAAAAATCCAGTGGTAAAATGCGAGACCGTTCACGATTATTTT 719
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      TTGTTGTGAGCTCCTTGTTAAGAAGATAAGAAATTTTTAACTTGTTTTTAACTAGTATTT 779
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      GACTTCTATAATCATAAAAATCCAAGCGACGAACTCGGTAAGTTCGCGCTTTCTTACGTT 839
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      TGCGTAAATTTTTTTTGGTAGACAGAGAAGTAGATTTCTTTAATGAATTTTGTAAATTAG 899
consensus_8664#1      ------------------------------------------------------------
                                                                                  

consensus_8664#0      TTATTTCTTCTGAATGTGATTGACAAATTATGCTCTTGTCAGTTAGAGATACTTTG 955
consensus_8664#1      --------------------------------------------------------