These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 599 fasta sequence [AATTATCGGATGGTAACTGCCCTAACGACGGTGGAATAAGACTGTGTGGGAACCCACTATTTAGTCCTCCAGATCCAGAATTCATCAGTAATTGTTGCTGTTGCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAAATTCGCGAAGGATACATTAAAAGTGAGTAACGAACCAGCTACTATCCATGAAGAATGACC] [+] EMBL CD132620 [AATTATCGGATGGTAACTGCCCTAACGACGGTGGAATAAGACTGTGTGGGAACCCACTATTTAGTCCTCCAGATCCAGAATTCATCAGTAATTGTTGCTGTTGCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGC ] [+] EMBL CD068237 [ AAGACTGTGTGGGAACCCACTATTTAGTCCTCCAGATCCAGAATTCATCAGTAATTGTTGCTGTTGCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCAT CCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTG ] [+] EMBL CD153187 [ AAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAAATTCGCGAAGGATACATTANAAGTGAGTAACGAACCAGCTACTATCCATGAAGAATGAC ] [+] EMBL CD153167 [ AAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAAATTCGCGAAGGATACATTAAAAGTGAGTAACGAACCAGCTACTATCCATGAAGAATGAC ] [-] EMBL CD153203 [ ATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTNTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTTTCAAGCATCCGGGGCAGAAAATATTGTATGTTGGGTGCTTTGAGAAGAAGAAAAAATTTTCGAAGGATACATTTAAAGTGAGTAGCGGACCAGCTACTATCCATGAAGAATGACC] [-] EMBL CD187502 [ CTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCTTAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAAATTCGCGAAGGATACATTAAAAGTGAGTAACGAACCAGCTACTATCCATG ] consensusID : consensus_8683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [AATAAGACTGTGTGGGANCNCACTATTAGTCCCTCCAGATCCAGAATTCATCAGTAATTGTGCTGTGNNCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATNTCGGGCCTNTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTCTTGAGATAAAAATGGGATAACTTGTACTAAGACAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAATGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTC] [-] EMBL CD165223 [AATAAGACTGTGTGGGANCNCACTATTAGTCCCTCCAGATCCAGAATTCATCAGTAATTGTGCTGTGNNCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATNTCGGGCCTNTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTCTTGAGATAAAAATGGGATAACTTGTACTAAGACAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAATGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8683#0 AATTATCGGATGGTAACTGCCCTAACGACGGTGGAATAAGACTGTGTGGGAACCCACTAT 60 consensus_8683#1 ----------------------------------AATAAGACTGTGTGGGANCNCACTAT 26 ***************** * ****** consensus_8683#0 TTAGTCCTCCAGATCCAGAATTCATCAGTAATTGTTGCTGT-TGCATAGTCTTAAAAAAG 119 consensus_8683#1 TAGTCCCTCCAGATCCAGAATTCATCAGTAATTGT-GCTGTGNNCATAGTCTTAAAAAAG 85 * ****************************** ***** **************** consensus_8683#0 TCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCA 179 consensus_8683#1 TCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATNTCGGGCCTNTAGACTCA 145 ****************************************** ******** ******** consensus_8683#0 TCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCC 239 consensus_8683#1 TCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCC 205 ************************************************************ consensus_8683#0 ACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAG 299 consensus_8683#1 ACTGCTGCAGCAACCT------------CTTGAGATAAAAATGGGATAACTTGTACTAAG 253 **************** ******************************** consensus_8683#0 ATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAA 359 consensus_8683#1 ACAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAA 313 * ********************************************************** consensus_8683#0 GTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTT 419 consensus_8683#1 GTTATCTCATAATACAGCAGGTAATGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTT 373 *********************** ************************************ consensus_8683#0 TCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATT 479 consensus_8683#1 TCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTC---------- 423 ************************************************** consensus_8683#0 TTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAA 539 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 ATTCGCGAAGGATACATTAAAAGTGAGTAACGAACCAGCTACTATCCATGAAGAATGACC 599 consensus_8683#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||