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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8688#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1348 fasta sequence
[GTTGTTCGACCCAAGAAAATAACATGAGCCCACATATGAACATGGATTGCCCTGCCGTGAATTTCCATGGCATTGAACTACAATCTCACGAGAAAGGGGATAGCAAACAGAATTCTTTTTGTGCCCTCCGAACTCTTACTAATCTAGAGGAACATGAGATACTCACTTCTTCTGGTTTATACCAACGGGTTTACGTTCAACCTAATAAGAATAAAACTGCAATTATCACTTATCATGATATTGGAACTAATCATACATCGTTTCTTAGTCTATTCAATAATCCTGAAATGCGTGTAATTACTGAAAACTTTACAGTTTATCATATATGTGCTCCTGGACATCATGAAAATGCAACAAATATTAGTTTTGGATTGATCCCTANAATAACACCATTATCACCTAATGATGAACCTGGTCAAGATCAAGTATTATTATCATCACAGCCGGATATACAAAAACAACGTCAATCAATTTCATCAGTTACTGGTAGTAGAGGAAGTATTTTTGAAGCAGTTCGTAGAAGAATC-TCACTATTATTGAATCGGTCTCGNTATCCGAGTATGGATCAGTTGGCTGATATGATCACATCAATCCTTGNTCATTTTGNAATAAA-TATTTTTTGGGTCTTGGTATGGGAGCTGGGTCAAATATTCTCGCTCGTTATGCACTTCGTTATCCAGATCAAGTATTGGGATTATTCCTTATTAATCCAAATGCATCAACTCATGGTTATTATCAATGGTTTCGTAATGTTTGGTCTGATTTACCTGCACTTGAACGTGGTGTACTAACGGATAATTTAATGAGTCAATTAGAAGCTCATTGGTTTGGATTTGGTTTAGTCGAAAATGCTGATGTAGCTAATTTTTATGAATCATTAACACGAAGTTTAAATCCAGCTAATTTAGCTGGTAATATACGTTCTTATGTGGATCGAACACCATTACCGTTAGTTCGACCAGTACCTGGTCCTCCAATACCTGATGCTCAAACAAATCCAAATGAAGAACCATCAGTTATACTTACTGAAGTATGCTTAGTAACTGGTGATCGCGCTGTGGAATTGTCACGTGCTTTAGCCGATATGAATGGACGTATGGATCCGAAGCGTACACAATTTCTTATGATGCCTGGTTGTACTGGTATGGTGATGGAAGAGAATCCTAGCAAATTAATAATGAATTTTTTACACTTCTTGCGTAGTATTGGTCTTGTTATCAACCTTACACCAGAGAAAATGCGTCAACAAGCAACAGATTTACAACAATCTATGCTTGAAGAATTACCTGAAACATGTTTACCAGCTAAATTGGTTGTAGAACCTGAAGTTTAAAAGAAAATGGACAAC]
[+] EMBL CD096226 [GTTGTTCGACCCAAGAAAATAACATGAGCCCACATATGAACATGGATTGCCCTGCCGTGAATTTCCATGGCATTGAACTACAATCTCACGAGAAAGGGGATAGCAAACAGAATTCTTTTTGTGCCCTCCGAACTCTTACTAATCTAGAGGAACATGAGATACTCACTTCTTCTGGTTTATACCAACGGGTTTACGTTCAACCTAATAAGAATAAAACTGCAATTATCACTTATCATGATATTGGAACTAATCATACATCGTTTCTTAGTCTATTCAATAATCCTGAAATGCGTGTAATTACTGAAAACTTTACAGTTTATCATATATGTGCTCCTGGACATCATGAAAATGCAACAAATATTAGTTTTGGATTGATCCCTANAATAACACCATTATCACCTAATGATGAACCTGGTCAAGATCAAGTATTATTATCATCACAGCCGGATATACAAAAACAACGTCAATCAATTTCATCAGTTACTGGTAGTAGAGGAAGTATTTTTGAAGCAGTTCGTAGAAGAATC TCACTATTATTGAATCGGTCTCGNTATCCGAGTATGGATCAGTTGGCTGATATGATCACATCAATCCTTGNTCATTTTGNAATAAA TATTTTTTGGGTCT ]
[-] EMBL CD191796 [ CGTCAATCAATTTCATCAGTTACTGGTAGTAGAGGAAGTATTTTTGAAGCAGTTCGTAGAAG ATCTTCACTATTATTGAATCGGTCTCGTTATCCGAGTATGGATCAGTTGGCTGATATGATCACATCAATCCTTGTTCATTTTGGAATAAATTATTTTTTGGGTTTTGGTATGGGAGCTGGGTCAAATATTCTCGCTCGTTATGCACTTCGTTATCCAGATCAAGTATTGGGATTATTCCTTATTAATCCAAATGCATCAACTCATGGTTATTATCAATGGTTTCGTAATGTTTGGTCTGATTTAC ]
[-] EMBL CD154965 [ CTGGGTCAAATATTCTCGCTCGTTATGCACTTCGTTATCCAGATCAAGTATTGGGATTATTCCTTATTAATCCAAATGCATCAACTCATGGTTATTATCAATGGTTTCGTAATGTTTGGTCTGATTTACCTGCACTTGAACGTGGTGTACTAACGGATAATTTAATGAGTCAATTAGAA ]
[-] EMBL CD197276 [ TAATCCAAATGCATCAACTCATGGTTATTATCAATGGTTTCGTAATGTTTGGTCTGATTTACCTGCACTTGAACGTGGTGTACTAACGGATAATTTAATGAGTCAATTAGAAGCTCATTGGTTTGGATTTGGTTTAGTCGAAAATGCTGATGTAGCTAATTTTTATGAATCATTAACACGAAGTTTAAATCCAGCTAATTTAGCTGGTAATATACGTTCTTATGTGGATCGAACACCATTACCGTTAGTTCGACCAGTACCTGGTCCTCCAATACCTGATGCTCAAACAAATCCAAATGAAGAACCATCAGTTATACTTACTGAAGTATGCTTAGTAACTGGTGATCGCGCTGTGGAATTGTCACGTGCTTTAGCCGATATGAATGGACGTATGGATCCGAAGCGTACA ]
[+] EMBL CD202331 [ AACACGAAGTTTAAATCCAGCTAATTTAGCTGGTTATATACGTTCTTATGTGGATCGAACACCATTACCGTTAGTTCGACCAATACCTGGTCCTCCAATGCCTGATGCTCAAACAAATCCAAATGAAGAACCATCAGTTATACTTACTGAAGTATGCTTAGTAACTGGTGATCGCGCTGTGGAATTGTCACGTGCTTTAGCCGATATGAATGGACGTATGGATCCGAAGCGTACACAATTTCTTATGATGCCTGGTTGTACTGGTATGGTGATGGAAGAGAATCCTAGCAAATTAATAATGAATTTTTTACACTTCTTGCGTAGTATTGGTCTTGTTATCAACCTTACACCAGAGAAAATGCGTCAACAAGCAACAGATTTACAACAATCTATGCTTGAAGAATTACCTGAAACATGTTTACCAGCTAAATTGGTTGTAGAACCTGAAGTTTAAAAGAAAATGG ]
[-] EMBL CD072765 [ TGCGTAGTATTGGTCTTGTTATCAACCTTACACCAGAGAAAATGCGTCAACAAGCAACAGATTTACAACAATCTATGCTTGAAGAATTACCTGAAACATGTTTACCAGCTAAATTGGTTGTAGAACCTGAAGTATAAAAGAAAATGGACAAC]
consensusID : consensus_8688#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[GCCCTGCCGTGAATTTCCATGGCATTGAACTACAATCTCACGAGAAAGGGGATAGCAAACAGAATTCTTTTTGTGCCCTCCGAACTCTTACTAATCTAGAGGAACATGAGATACTCACTTCTTCTGGTTTATACCAACGGGTTTACGTTCAACCTAATAAGAATAAAACTGCAATTATCACTTATCATGATATTGGAACTAATCATACATCGTTTCTTAGTCTATTCAATAATCCTGAAATGCGTGTAATTACTGAATACTTTACAGTTTATCATATATGTGCTCCTGGACATCATGAAAATGCAACAAATATTAGTTTTGGTGAACCTGGTCAAGATCAAGTATTATTATCATCACAGCCGGATATACAAAAACAACGTCAAT]
[-] EMBL CD086930 [GCCCTGCCGTGAATTTCCATGGCATTGAACTACAATCTCACGAGAAAGGGGATAGCAAACAGAATTCTTTTTGTGCCCTCCGAACTCTTACTAATCTAGAGGAACATGAGATACTCACTTCTTCTGGTTTATACCAACGGGTTTACGTTCAACCTAATAAGAATAAAACTGCAATTATCACTTATCATGATATTGGAACTAATCATACATCGTTTCTTAGTCTATTCAATAATCCTGAAATGCGTGTAATTACTGAATACTTTACAGTTTATCATATATGTGCTCCTGGACATCATGAAAATGCAACAAATATTAGTTTTGGTGAACCTGGTCAAGATCAAGTATTATTATCATCACAGCCGGATATACAAAAACAACGTCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8688#0 GTTGTTCGACCCAAGAAAATAACATGAGCCCACATATGAACATGGATTGCCCTGCCGTGA 60
consensus_8688#1 ------------------------------------------------GCCCTGCCGTGA 12
************
consensus_8688#0 ATTTCCATGGCATTGAACTACAATCTCACGAGAAAGGGGATAGCAAACAGAATTCTTTTT 120
consensus_8688#1 ATTTCCATGGCATTGAACTACAATCTCACGAGAAAGGGGATAGCAAACAGAATTCTTTTT 72
************************************************************
consensus_8688#0 GTGCCCTCCGAACTCTTACTAATCTAGAGGAACATGAGATACTCACTTCTTCTGGTTTAT 180
consensus_8688#1 GTGCCCTCCGAACTCTTACTAATCTAGAGGAACATGAGATACTCACTTCTTCTGGTTTAT 132
************************************************************
consensus_8688#0 ACCAACGGGTTTACGTTCAACCTAATAAGAATAAAACTGCAATTATCACTTATCATGATA 240
consensus_8688#1 ACCAACGGGTTTACGTTCAACCTAATAAGAATAAAACTGCAATTATCACTTATCATGATA 192
************************************************************
consensus_8688#0 TTGGAACTAATCATACATCGTTTCTTAGTCTATTCAATAATCCTGAAATGCGTGTAATTA 300
consensus_8688#1 TTGGAACTAATCATACATCGTTTCTTAGTCTATTCAATAATCCTGAAATGCGTGTAATTA 252
************************************************************
consensus_8688#0 CTGAAAACTTTACAGTTTATCATATATGTGCTCCTGGACATCATGAAAATGCAACAAATA 360
consensus_8688#1 CTGAATACTTTACAGTTTATCATATATGTGCTCCTGGACATCATGAAAATGCAACAAATA 312
***** ******************************************************
consensus_8688#0 TTAGTTTTGGATTGATCCCTANAATAACACCATTATCACCTAATGATGAACCTGGTCAAG 420
consensus_8688#1 TTAGTTTTGG------------------------------------TGAACCTGGTCAAG 336
********** **************
consensus_8688#0 ATCAAGTATTATTATCATCACAGCCGGATATACAAAAACAACGTCAATCAATTTCATCAG 480
consensus_8688#1 ATCAAGTATTATTATCATCACAGCCGGATATACAAAAACAACGTCAAT------------ 384
************************************************
consensus_8688#0 TTACTGGTAGTAGAGGAAGTATTTTTGAAGCAGTTCGTAGAAGAATCTCACTATTATTGA 540
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 ATCGGTCTCGNTATCCGAGTATGGATCAGTTGGCTGATATGATCACATCAATCCTTGNTC 600
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 ATTTTGNAATAAATATTTTTTGGGTCTTGGTATGGGAGCTGGGTCAAATATTCTCGCTCG 660
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 TTATGCACTTCGTTATCCAGATCAAGTATTGGGATTATTCCTTATTAATCCAAATGCATC 720
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 AACTCATGGTTATTATCAATGGTTTCGTAATGTTTGGTCTGATTTACCTGCACTTGAACG 780
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 TGGTGTACTAACGGATAATTTAATGAGTCAATTAGAAGCTCATTGGTTTGGATTTGGTTT 840
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 AGTCGAAAATGCTGATGTAGCTAATTTTTATGAATCATTAACACGAAGTTTAAATCCAGC 900
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 TAATTTAGCTGGTAATATACGTTCTTATGTGGATCGAACACCATTACCGTTAGTTCGACC 960
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 AGTACCTGGTCCTCCAATACCTGATGCTCAAACAAATCCAAATGAAGAACCATCAGTTAT 1020
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 ACTTACTGAAGTATGCTTAGTAACTGGTGATCGCGCTGTGGAATTGTCACGTGCTTTAGC 1080
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 CGATATGAATGGACGTATGGATCCGAAGCGTACACAATTTCTTATGATGCCTGGTTGTAC 1140
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 TGGTATGGTGATGGAAGAGAATCCTAGCAAATTAATAATGAATTTTTTACACTTCTTGCG 1200
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 TAGTATTGGTCTTGTTATCAACCTTACACCAGAGAAAATGCGTCAACAAGCAACAGATTT 1260
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 ACAACAATCTATGCTTGAAGAATTACCTGAAACATGTTTACCAGCTAAATTGGTTGTAGA 1320
consensus_8688#1 ------------------------------------------------------------
consensus_8688#0 ACCTGAAGTTTAAAAGAAAATGGACAAC 1348
consensus_8688#1 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||