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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 826 fasta sequence
[GGCCAGAAATGGCACGAGGTCCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGGATTTCTTTCTACTTGTCAATATACATATCCAA-TCACATCCGCCAATGCTGTTTTCAATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCCTGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGATTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT]
[+] EMBL CD081449 [GGCCAGAAATGGCACGAGGTCCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGGATTTCTTTCTACTTGTCAATATACATATCCAA TCACATCCGCCAATGCTGTTTTCAATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGC ATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCCTGTT ]
[+] EMBL CD083335 [ gagGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGCGTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTTCGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTACGAGGATTTCTTTCTACTTGTCAATATACATTTCCAATTCACATCCGCCAATGCTGTTTTCAATAGTGACCATCC ]
[-] EMBL CD152784 [ TATCCAA TCACATCCGCCAATGCTGTTTTCAATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGTTGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTATAGAAAATCCCTCCAGTCATACGCCTGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGATTTGG ]
[-] EMBL CD154608 [ ATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGGAACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATACGCCTGTTCATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATATAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTACGGATTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT]
consensusID : consensus_8690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 466 fasta sequence
[ACGA-GCG-TCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAGACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGC-GACTTGAAA-GTAAAAATATGGAGTATTT-TGTGCGTCTGCGTTTGGCAGCTCTTTCT----GT-CTCCATCTACCACCGCGAGTT]
[+] EMBL CD084110 [ACGAGGCG TCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAGACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGA ]
[-] EMBL CD065474 [ CGA CCGTTCAAACGTATTTAAATTCGAAGGTAGACGATTTTACATGTATTATTCCGGTAGACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGGC GACTTGAAA GTAAAAATATGGAGTATTT TGTGCGTCTGCGTTTGGCAGCTCTTTCT GT CTCCATCTACCACCGCGAGTT]
[-] EMBL CD065701 [ CAGACGTATTTAAATTCGAAGATAGACGATTTTTCATGTATTATTCCGGTAGACAAGATACAAAAGCTACCTGACGACCTCTCCAAGTTGCTGATTATGCGTGTTGATTTTTTCACCTATTGCTTACCTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCTTACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGGAGTAAAATTGACAGACGTATCGAATATGCCGAATAGTCTGCTAAGAAGTTCCAGTTGTCTAATGTTATGTTTAGATACAATGTGTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACATACCACTTAGAATGGACTGCGAGCTGTCGGACTTGAAATGTATAAATATGGAGTATTTCTGTGCGTCCGCG TTGGCAGCTCTTTCTTCGCGTACTCCATCTACCc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8690#0 ------------------------------------------------------------
consensus_8690#1 ACGAGCGTCAAACGTATTTAAATTCGAAGGTAGACGATTTTTCATGTATTATTCCGGTAG 60
consensus_8690#0 ------------------------------------------------------------
consensus_8690#1 ACAAGATAAAAAAGCTACCTGACGACTTCTCCAAGTTGCTGATTATGCGTGTTGATTTTT 120
consensus_8690#0 --GGCCAGAAATGGCACGAGGTC--CACGCGTGATTTTCCAGTGCGCATCACTTTTTGCT 56
consensus_8690#1 TCACCTATTGCTTACGTTATATCTTCACGCGTGATTTTCCAGTGCGCATCACTTTTTGCT 180
* * * * * ** ***********************************
consensus_8690#0 TACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGA 116
consensus_8690#1 TACCTATATTTGTTTCCATATTTAGTGGTTTTTTCGAAGTAAAATTGACAGACGTATCGA 240
************************************************************
consensus_8690#0 ATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGT 176
consensus_8690#1 ATATGCCGAATAGTCTGCTAAAAAGTTCCAGTCGTCTAATGTTATGTTTAGATACAATGT 300
************************************************************
consensus_8690#0 GTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACAT 236
consensus_8690#1 GTCAAACTGTTGGTACAGTAATCATGCCCGCTGTTCCTTGCTTGTTAACTCTTCTCACAT 360
************************************************************
consensus_8690#0 ACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGC 296
consensus_8690#1 ACCACTTAGAATGGACTGCGAGCTGGCGACTTGAAAGTAAAAATATGGAGTATTTTGTGC 420
************************************************************
consensus_8690#0 GTCTGCGTTTGGCAGCTCTTTCTTGCTTACTCCATCTTACCACCGCGAGTTTAAAGTTTT 356
consensus_8690#1 GTCTGCGTTTGGCAGCTCTTTCTGTCT----CCATCT-ACCACCGCGAGTT--------- 466
*********************** ** ****** *************
consensus_8690#0 CGTACGCATATTTTATAGAAATGATACCACGAATATTTTCACAGTTGATTTATGATTTAC 416
consensus_8690#1 ------------------------------------------------------------
consensus_8690#0 GAGGATTTCTTTCTACTTGTCAATATACATATCCAATCACATCCGCCAATGCTGTTTTCA 476
consensus_8690#1 ------------------------------------------------------------
consensus_8690#0 ATAGTGACCATCCGAAACCTCAAGTTGATTCGCCCGGAATGTTTGAGAAGCGTATGCTGT 536
consensus_8690#1 ------------------------------------------------------------
consensus_8690#0 TGGCGATCCTGCTCCTGATAGAATATATTTTTAAAGATCCAGGGGTTCTGCGCTATGTGG 596
consensus_8690#1 ------------------------------------------------------------
consensus_8690#0 AACTCTCCAAAGCAATAGACTCGAGTTGCACGACTAGTAAAGAAAATCCCTCCAGTCATA 656
consensus_8690#1 ------------------------------------------------------------
consensus_8690#0 CGCCTGTTTATAACGAAGTGAATAGTCTTTTGAACTGTATAGTCAGCTTACTCTCACATA 716
consensus_8690#1 ------------------------------------------------------------
consensus_8690#0 TAAATGTTATTCTTAGCTATGGAGTGTCTCATACTCAGCGGCAGGAAAAGACCGGTTTTA 776
consensus_8690#1 ------------------------------------------------------------
consensus_8690#0 CGGATTTGGTCAGTCCACCTCTGTTAATTGCTTTAGCAAAAGCTTCCTTT 826
consensus_8690#1 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||