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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 630 fasta sequence
[TCGAGGCCANAATTCGGCACGAGGCGCTTTGAAGAAGAAGATAAGGAATTTATAAAATCCTACCCTCGA-GTTATAGAA-A-ATAGTATTGGTCAAACACTTTGTGTTAAATCGAAACGAGCTGAACGGAGACAAGCTAAGATTGAACGTAAGCGAAAAGAGAAACAAGCTAAACTGCAAGAATTAACTCGCCTACGGAATCTAAAATTAAGTATGCTAGCTGAAAAAATTGAAAGAATTAAACGTACTTGTGGTCCAGGATCATTACTGCTTGATTCTAATGAATTGATTGAATCACAGACTAAAGAATATGATAGTAATGATAATAAGTTGAAAAATTCAACCAAGGTAGATGTCCTAGATGTTGCTGAATATTTAGATGAAGATTGGGATCCTGAAAAACATGAAAAGTTGTTGGACTCAATGTTCGGCAAACAGTATGAAGAAATAGATGAAGAGATAAAAAAGCCGGAGTTTTCGGATGATAGTGATCTAGAAGTGGAGCCTTCAGTAGATGATGGGTACAATTCACAGATGAAACAATGTGAATCGAAAACATCTATCAATAGTGATGTTGATGATAATGTACCATTAAAATACTCGAGCGATTTGAATTCTACCCANCAATTATCT]
[+] EMBL CD082972 [TCGAGGCCANAATTCGGCACGAGGCGCTTTGAAGAAGAAGATAAGGAATTTATAAAATCCTACCCTCGA GTTATAGAA A ATAGTATTGGTCAAACACTTTGTGTTAAATCGAAACGAGCTGAACGGAGACAAGCTAAGATTGAACGTAAGCGAAAAGAGAAACAAGCTAAACTGCAAGAATTAACTCGCCTACGGAATCTAAAATTAAGTATGCTAGCTGAAAAAATTGAAAGAATTAAACGTACTTGTGGTCCAGGATCATTACTGCTTGATTCTAATGAATTGATTGAATCACAGACTAAAGAATATGATAGTAATGATAATAAGTTGAAAAATTCAACCAAGGTAGATGTCCTAGATGTTGCTGAATATTTAGATGAAGATTGGGATCCTGAAAAACATGAAAAGTTGTTGGACTCAATGTTCGGCAAACAGTATGAAGAAATAGATGAAGAGATAAAAAAGCCGGAGTTTTCGGATGATAGTGATCTAGAAGTGGAGCCTTCAGTAGATGATGGGTACAATTCACAGATGAAACAATGTGAATCGAAAACATCTATCAATAGTGATGTTGATGATAATGTACCATTAAAATACTCGAGCGATTTGAATTCTACCCANCAATTATCT]
[+] EMBL CD126003 [ GAAGAAGATAAGGAATTTATAAAATCCTACCCTCGATGTTATATAACACATAGTATTGGTCCAACACTTTGTGTTAAATCGAAACGAGCTGAACGGAGACAAGCTAAGATTGAACGTAAGCGAAAAGAGAAACAAGCTAAACTGCAAGAATTAACTCGCCTACGGAATCT ]
[-] EMBL CD159041 [ CAGTATGAAGAAATAGATGAAGAGATAAAAAAGCCGGAGTTTTCGGATGATAGTGATCTAGAAGTGGAGCCTTCAGTAGATGATGGGTAC ]
[-] EMBL CD158952 [ CAGTATGAAGAAATAGATGAAGAGATAAAAAAGCCGGAGTTTTCGGATGATAGTGATCTAGAAGTGGAGCCTTCAGTAGATGATGGGTAC ]
consensusID : consensus_8691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 437 fasta sequence
[GAAAAAAGCATAAATCTCATCATGATTTAGATAAAATAGTTTTTACTGATTCGACTAACAAAGAAGCTGAAGAATTTTTACGTGATTATATTATAAATAAACGTTGGATTGAACCTAATTCACGACGAAGTAATAAAATTCCAACTTATTCTGATGTTCTACGAG-AATCCGGCTTAGATGTAAATGGGGATAAAATGAATAATCTTTTAAATGATGATGATATTCTTGATGAAGACGATGAATTCCTTGTTAAATTAAATAATTTAGAACAGGGACGTTTACAGTCTTTAGGTGTTAATACGGGTGTTACAAAATTGCATAAAACTGAGCATCGCTTTGAAGAAGAAGATAAGGAATTTATAAAATCCTACCCTCGAGTTATAGAAAATAGTATTGGTCAAACACTTTGTGTTAAATCGAAACGAGCTGAACGGAGA]
[+] EMBL CD171408 [GAAAAAAGCATAAATCTCATCATGATTTAGATAAAATAGTTTTTACTGATTCGACTAACAAAGAAGCTGAAGAATTTTTACGTGATTATATTATAAATAAACGTTGGATTGAACCTAATTCACGACGAAGTAATAAAATTCCAACTTATTCTGATGTTCTACGAG AATCCGGCTTAGATGTAAATGGGGATAAAATGAATAATCTTTTAAATGATGATGATATTCTTGATGAAGACGATGAATTCCTTGTTAAATTAAATAATTTAGAACAGGGACGTTTACAGTCTTTAGGTGTTAATACGGGTGTTACAAAATTGCATAAAACTGAGCATCGCTTTGAAG ]
[+] EMBL CD171297 [GAAAAAAGCATAAATCTCATCATGATTTAGATAAAATAGTTTTTACTGATTCGACTAACAAAGAAGCTGAAGAATTTTTACGTGATTATATTATAAATAAACGTTGGATTGAACCTAATTCACGACGAAGTAATAAAATTCCAACTTCTTCTGATGTTCTACGAGAAATCCGGCTTAGCTGTAAATGGGGAAAAAATGAA ]
[+] EMBL CD061855 [ TGTAAATGGGGATAAAATGAATAATCTTTTAAATGATGATGATATTCTTGATGAAGACGATGAATTCCTTGTTAAATTAAATAATTTAGAACAGGGACGTTTACAGTCTTTAGGTGTTAATACGGGTGTTACAAAATTGCATAAAACTGAGCATCGCTTTGAAGAAGAAGATAAGGAATTTATAAAATCCTACCCTCGAGTTATAGAAAATAGTATTGGTCAAACACTTTGTGTTAAATCGAAACGAGCTGAACGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8691#0 TCGAGGCCANAATTCGGCACGAGGCGCTTTGAAGAAGAAGATAAGGAATTTATAAAATCC 60
consensus_8691#1 ------------------------------------------------------------
consensus_8691#0 TACCCTCGAGTTATAGAAAATAGTATTGGTCAAACACTTTGTGTTAAATCGAAACGAGCT 120
consensus_8691#1 ------------------------------------------------------------
consensus_8691#0 GAACGGAGACAAGCTAAGATTGAACGTAAGCGAAAAGAGAAACAAGC-TAAACTGCAAGA 179
consensus_8691#1 --------------------------------------GAAAAAAGCATAAATCTCATCA 22
**** **** **** ** *
consensus_8691#0 ATTAACTCGCCTACGGAATCTAAAATTAAGTATGCTAGCTGAAAAAATTGAAAGAATTAA 239
consensus_8691#1 --TGATTTAGATAAAATAGTTTTTACTGATTCGACTAAC-AAAGAAGCTGAAGAATTTTT 79
* * * ** * * * * * * *** * ** ** **** * **
consensus_8691#0 ACGTACTTGTGGTCCAGGATCATTACTGCTTGATTCTAATGAATTGATTGAATCACAGAC 299
consensus_8691#1 ACGTGATTATATTATAA----ATAAACGTTGGATT-----GAACCTAATTCACGACGAAG 130
**** ** * * * ** * * * **** *** * * * ** *
consensus_8691#0 TAAAGAATATGATAGTAATGATAATAAGTTG-AAAAATTCAACCAAG--GTAGATGTCCT 356
consensus_8691#1 TAATAAAATTCCAACTTATTCTGATGTTCTACGAGAATCCGGCTTAGATGTAAATGGGGA 190
*** ** * * * ** * ** * * *** * * ** *** ***
consensus_8691#0 AGATGTTGCTGAATATTTAGATGAAGATTGGGATCCTGAAAAACATGAAAAGTTGTTGGA 416
consensus_8691#1 TAAAATGAATAATCTTTTAAATGATGATGATATTCTTGATGAAGACGA--------TGAA 242
* * * * **** **** *** ** *** ** * ** ** *
consensus_8691#0 CTCAATGTTCGGCAAACAGTATGAAGAAATAGATGAAGAGATAAAAAAGCCGGAGTTTTC 476
consensus_8691#1 TTCCTTGTT----AAATT--------AAATA-ATTTAGAACAGGGACGTTTACAGTCTTT 289
** **** *** ***** ** *** * *** **
consensus_8691#0 GGATGATAGTGATCTAGAAGTGGAGCCTTCAGTAGATGATGGGTACAATTCACAGATGAA 536
consensus_8691#1 AGGTGTTAATA--CGGGTGTTACAAAATTGCATAAA-ACTGAGCATCGCTTTGAAGAAGA 346
* ** ** * * * * * ** ** * ** * * * * *
consensus_8691#0 ACAATGTGAATCGAAAACATCTATCAATAGTGATGTTGATGATAATGTACCATTAAAATA 596
consensus_8691#1 AGATAAGGAATTTATAAAATCCTACCCTCGAGTTATAGAAAATAGTATTGGTCAAACACT 406
* * **** * ** *** * * * * * * ** *** * * ** *
consensus_8691#0 CTCGAGCGATTTGAATTCTACCCANCAATTATCT 630
consensus_8691#1 TTGTGTTAAATCGAAACGAGCTGAACGGAGA--- 437
* * * *** * * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||