cluster # 8693

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Schistosoma mansoni
cluster # 8693 cluster # 8693 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8693#0 length = 816 sequences # 4

consensus_8693#1 length = 707 sequences # 2
consensus_8693#2 length = 457 sequences # 1

consensusID : consensus_8693#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 816
fasta sequence

                              [CCTCCGGGCCAANAATTCGGCACGAGGGGTTTTTTGTGCTGATTTGAGGACTATGCCTTTCACGCCAGCAAAAGTAGAGAAGTGTGTACGTTGTGACAAATCGGTTTACGCTGCTGAAAGGATGGAAGCCGGTGGGAATATCTGGCACAAGCGTTGTTTTTGTTGTTCTAAATGTGATATGCTACTGAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTAAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTNTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGTTTTCCACACAAAAAAAAAAAAAAAAAAAAAAAGGCGGNNAAAAAAAAA]

[+] EMBL CD081998             [CCTCCGGGCCAANAATTCGGCACGAGGGGTTTTTTGTGCTGATTTGAGGACTATGCCTTTCACGCCAGCAAAAGTAGAGAAGTGTGTACGTTGTGACAAATCGGTTTACGCTGCTGAAAGGATGGAAGCCGGTGGGAATATCTGGCACAAGCGTTGTTTTTGTTGTTCTAAATGTGATATGCTACTGAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTAAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTNTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTNTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTTCTTATCACTAGTATAATCATCTCTTGACAAAAG TTATCATTCCCCTG TTTATATAAATG TCATGG TATGTAA TGC TTTATTG ACAAtan                                                     ]
[-] EMBL CD075610             [                                                                                                                                                    AAGCG TGTTTTGTTTGTTCTAAATGTGATATGCTACTGAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTAAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGT                                                ]
[+] EMBL AA883027             [                                                                                                                                                                                                                                                                          CCCAAACTCCAATCTAATGTTCTAAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAGTTGAATTATGATATAATTTTGGAAAGATCTTTATTATTATTATTATTATTATTATTATTATTATCAGTAGTAGTAGTAGTGAGTTGaatc                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD131601             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGTTTTCCACACAAAAAAAAAAAAAAAAAAAAAAAGGCGGNNAAAAAAAAA]




>consensus_8693#0
CCTCCGGGCCAANAATTCGGCACGAGGGGTTTTTTGTGCTGATTTGAGGACTATGCCTTT
CACGCCAGCAAAAGTAGAGAAGTGTGTACGTTGTGACAAATCGGTTTACGCTGCTGAAAG
GATGGAAGCCGGTGGGAATATCTGGCACAAGCGTTGTTTTTGTTGTTCTAAATGTGATAT
GCTACTGAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTA
TCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTAAAGTAAAAAG
AAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAAT
AATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTAT
TATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTT
AGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTNTCTTTAT
GAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCAT
CGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTG
ATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTTTATCATTTCCCTGTTTTA
TATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGTTTTCCACACAAA
AAAAAAAAAAAAAAAAAAAAGGCGGNNAAAAAAAAA

consensusID : consensus_8693#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 707
fasta sequence

                              [CCGGGGGGGTTTTTTTGTGTGGGGGTTTTTTTTTANAAAAAGGNAATTGGNNAAGCCCGGTGGAAATAATCGTGCACCAAGCGGTTGTTGTTGTTGNTTTTTAAATGGGATATGCTGCTGAATTTTAACCAATAATATGCAAAGTTATTGAAATCTGTTNTGGTAAAAGCATTATCAAAGAAGAGGTTTGGCTTAAAAATACCCAACCTCCAATCTAATGTTTTAAAGTAAAAAGAAAAATGGCCAGATATACCTATCTATACTCTTTACCCCTTCTTATTACAGCTAAAAATAATAGTTGAATTATGATATAATTTTGGAAAGATCTTTATTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTCTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGT]

[-] EMBL CD076897             [CCGGGGGGGTTTTTTTGTGTGGGGGTTTTTTTTTANAAAAAGGNAATTGGNNAAGCCCGGTGGAAATAATCGTGCACCAAGCGGTTGTTGTTGTTGNTTTTTAAATGGGATATGCTGCTGAATTTTAACCAATAATATGCAAAGTTATTGAAATCTGTTNTGGTAAAAGCATTATCAAAGAAGAGGTTTGGCTTAAAAATACCCAACCTCCAATCTAATGTTTTAAAGTAAAAAGAAAAATGGCCAGATATACCTATCTATACTCTTTACCCCTTCTTATTACAGCTAAAAATAATAGTTGAATTATGATATAATTTTGGAAAGATCTTTATTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTCTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGT]
[-] EMBL SMAA28897            [                                                                                                                                                                                                                                                                                                                                                                      TTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTATTAGTCATTTATCTTAAAGTGGAAAATTTTCTCCTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTNTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACA         ]




>consensus_8693#1
CCGGGGGGGTTTTTTTGTGTGGGGGTTTTTTTTTANAAAAAGGNAATTGGNNAAGCCCGG
TGGAAATAATCGTGCACCAAGCGGTTGTTGTTGTTGNTTTTTAAATGGGATATGCTGCTG
AATTTTAACCAATAATATGCAAAGTTATTGAAATCTGTTNTGGTAAAAGCATTATCAAAG
AAGAGGTTTGGCTTAAAAATACCCAACCTCCAATCTAATGTTTTAAAGTAAAAAGAAAAA
TGGCCAGATATACCTATCTATACTCTTTACCCCTTCTTATTACAGCTAAAAATAATAGTT
GAATTATGATATAATTTTGGAAAGATCTTTATTATTATTATTATTATTATTATTATTATT
ATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTA
GATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATG
AGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATC
GATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGA
TATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTCTATCATTTCCCTGTTTTAT
ATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGT

consensusID : consensus_8693#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [TGAAAGTGTGTAAGAAACCTTATTATCAAGGGCCTAGCAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTGAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTT]

[+] EMBL CD140534             [TGAAAGTGTGTAAGAAACCTTATTATCAAGGGCCTAGCAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTGAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTT]




>consensus_8693#2
TGAAAGTGTGTAAGAAACCTTATTATCAAGGGCCTAGCAATTTAAACAATTATAATCAAA
GTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCC
AAACTCCAATCTAATGTTCTGAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACT
CTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGA
TCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTA
GTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAG
TCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCC
ATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8693#0      CCTCCGGGCCAANAATTCGGCACGAGGGGTTTTTTGTGCTGATTTGAGGACTATGCCTTT 60
consensus_8693#2      ------------------------------------------------------------
consensus_8693#1      ------------------------------------------------------------
                                                                                  

consensus_8693#0      CACGCCAGCAAAAGTAGAGAAGTGTGTACGTTGTGACAAATCGGTTTACGCTGCTGAAAG 120
consensus_8693#2      ------------------------------------------------------------
consensus_8693#1      -------------CCGGGGGGGTTTTTTTGTGTGGGGGTTTTTTTTTANAAAAAGGNAAT 47
                                                                                  

consensus_8693#0      GATGGAAGCCGGTGGGAATA---TCTGGCACAAGCG-TTGTTTTTGTTGTTCT--AAATG 174
consensus_8693#2      --------------TGAAAG---TGTGTAAGAAACC-TTATTATCAAGGGCCT--AGC-- 38
consensus_8693#1      TGGNNAAGCCCGGTGGAAATAATCGTGCACCAAGCGGTTGTTGTTGTTGNTTTTTAAATG 107
                                     ***       **    ** *  ** ** *    *   *  *    

consensus_8693#0      TGATATGCTACTGAATTTAAAC-AATTATAATCAAAGTGATCGAATTCTGTATTGTAAAA 233
consensus_8693#2      -------------AATTTAAAC-AATTATAATCAAAGTGATCGAATTCTGTATTGTAAAA 84
consensus_8693#1      GGATATGCTGCTGAATTTTAACCAATAATATGCAAAGTTATTGAAATCTGTTNTGGTAAA 167
                                   ***** *** *** ***  ****** ** *** *****  **  ***

consensus_8693#0      AGCATTATCAA-GAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTAAA 292
consensus_8693#2      AGCATTATCAA-GAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTGAA 143
consensus_8693#1      AGCATTATCAAAGAAGAGGTTTGGCTTAAAAATACCCAACCTCCAATCTAATGTTTTAAA 227
                      *********** ********** *  ************* *************** * **

consensus_8693#0      GTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCC-TTCTTATTACAGCT 351
consensus_8693#2      GTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCC-TTCTTATTACAGCT 202
consensus_8693#1      GTAAAAAGAAAAATGGCCAGATATACCTATCTATACTCTTTACCCCTTCTTATTACAGCT 287
                      **************** **************************** **************

consensus_8693#0      AAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTAT 411
consensus_8693#2      AAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTAT 262
consensus_8693#1      AAAAATAATAGTTGAATTATGATATAATTTTGGAAAGATCTTTATTATTATTATTATTAT 347
                      ********** ********************** **************************

consensus_8693#0      TATTATTATTATTA------------CTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGT 459
consensus_8693#2      TATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGT 322
consensus_8693#1      TATTATTATTATTATTA---------CTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGT 398
                      **************            **********************************

consensus_8693#0      ATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAA 519
consensus_8693#2      ATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAA 382
consensus_8693#1      ATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAA 458
                      ************************************************************

consensus_8693#0      TTTTCTCTTCTTTNTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTT 579
consensus_8693#2      TTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTT 442
consensus_8693#1      TTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTT 518
                      ************* **********************************************

consensus_8693#0      CATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTC 639
consensus_8693#2      CATAAATGTAACCTT--------------------------------------------- 457
consensus_8693#1      CATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTC 578
                      ***************                                             

consensus_8693#0      TTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAA 699
consensus_8693#2      ------------------------------------------------------------
consensus_8693#1      TTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAA 638
                                                                                  

consensus_8693#0      GTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACA 759
consensus_8693#2      ------------------------------------------------------------
consensus_8693#1      GTCTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACA 698
                                                                                  

consensus_8693#0      AAATAGAGTTTTCCACACAAAAAAAAAAAAAAAAAAAAAAAGGCGGNNAAAAAAAAA 816
consensus_8693#2      ---------------------------------------------------------
consensus_8693#1      AAATAGAGT------------------------------------------------ 707