cluster # 8695

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Schistosoma mansoni
cluster # 8695 cluster # 8695 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8695#0 length = 706 sequences # 5

consensus_8695#1 length = 359 sequences # 2

consensusID : consensus_8695#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 706
fasta sequence

                              [GAGGCCAAAAATTTGGCACGAGGGACGCTATGACACTCAAGAAGACTTTGAGTTAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAATCAAAACCGCGCCCGTTTCCTTCTGTGGTTGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGCGAACACAGAGAGGGGTACAATAGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTTCATCAATAATCCCAACATATCCATTCTTAATGTATTAAATTTCCCTTCGTCCAGCACCTTGAATATCAGTTCGACGGTTTGTCATAATTGTTCAGCAGCATATTATGGTCTCTTAGATTATTACACCAATAATCTTCTAAGATAT]

[+] EMBL CD079795             [GAGGCCAAAAATTTGGCACGAGGGACGCTATGACACTCAAGAAGACTTTGAGTTAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAATCAAAACCGCGCCCGTTTCCTTCTGTGGTTGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGCGAACACAGAGAGGGGTACAATAGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATTTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTCCATCAATAATCCCAACATATCCATTCTTAATGTATTAAATTTCCCTTCGTCCAGCACCTTGAATATCAGTTCGACGGTTTGTCATAATTGTTCAGCAGCATATTATGGTCTCTTAGATTATTACACCAATAATCTTCTAAGATAT]
[+] EMBL CD178818             [                                                                                                                                                                                                                                                                                                           ATCTTCTGGCGAACACAGAGAGGGGTACAATAGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTTCATCAATAATCCCAACATATCCATTCTTAATGTATTAAATTTC                                                                                                      ]
[+] EMBL CD178841             [                                                                                                                                                                                                                                                                                                           ATCTTCTGGCGAACACAGAGAGGGGTACAATAGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTTCATCAATAATCCCAACATATCCATTCTTAATGTATTAAATTTC                                                                                                      ]
[+] EMBL CD077787             [                                                                                                                                                                                                                                                                                                                                                 ATCGACTTTATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGCTTTA                                                                                                                                                                  ]
[-] EMBL CD062402             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gggAATCCCAACATATCCATTCTTAATGTATTAAATTTCCCTTCGTCCAGCACCTTGAATATCAGTTCGACGGTTTGTCATAATTGTTCAGCAGCATATTATGGTCTCTTAGATTA                         ]




>consensus_8695#0
GAGGCCAAAAATTTGGCACGAGGGACGCTATGACACTCAAGAAGACTTTGAGTTAATAAT
TTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAG
TAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAA
CATGTCAATCAAAACCGCGCCCGTTTCCTTCTGTGGTTGGTGTAGTGAAACTGTATATAA
GTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATGTGTTGA
TCTTCTGGCGAACACAGAGAGGGGTACAATAGATTCTATCGACTTCATTTTCGATAAATG
GAATCGTTCCTTCTGCTCCCATTGTCTTGAAGAATTTTCTTCCGATCAAAACACCAGTCT
ATCAACGGGTTCTTTCAATAACATAGAAGGGTCTAGACATCTTTTACACACGGATTCTCT
ATACAACTTGCAAGTCTACAGTAAAAACGTGCGTACATTCTTCGAAAAGCTTGATGATGC
TTTAAGTTGTTTCATGCAGTTCATCAATAATCCCAACATATCCATTCTTAATGTATTAAA
TTTCCCTTCGTCCAGCACCTTGAATATCAGTTCGACGGTTTGTCATAATTGTTCAGCAGC
ATATTATGGTCTCTTAGATTATTACACCAATAATCTTCTAAGATAT

consensusID : consensus_8695#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 359
fasta sequence

                              [CCACCAGGCTTTTTTAAATTTTGCCTTTATTCACTTTTGAGGTTTTATGCGACGCTATGACACTCAAGAAGACTTTGAGTTCAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAGCCAAAACCGCGCCCGTTTCCTTCTGTGGAATAGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGTGGACAGAAGGTCTAATCACT]

[-] EMBL CD122175             [CCACCAGGCTTTTTTAAATTTTGCCTTTATTCACTTTTGAGGTTTTATGCGACGCTATGACACTCAAGAAGACTTTGAGTTCAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAGCCAAAACCGCGCCCGTTTCCTTCTGTGGAATAGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGTGGACAGAAGGTCTAATCACT]
[+] EMBL CD124304             [                AATTTTGCCTTTATTCACTTTTGAGGTTTTATGCGACGCTATGACACTCAAGAAGACTTTGAGTTCAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTTCAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGTCGATATACGTTAAAAATATAATATACAACATGTCAGCCAAAACCGCGCCCGTTTCCTTCTGTGG  TTGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGCTTACAATGCAGATGGGAAGGCATG                                   ]




>consensus_8695#1
CCACCAGGCTTTTTTAAATTTTGCCTTTATTCACTTTTGAGGTTTTATGCGACGCTATGA
CACTCAAGAAGACTTTGAGTTCAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTT
CAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGT
CGATATACGTTAAAAATATAATATACAACATGTCAGCCAAAACCGCGCCCGTTTCCTTCT
GTGGAATAGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGC
TTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGTGGACAGAAGGTCTAATCACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8695#0      --------------------------GAGGCCAAAAATTTGGCACGAGG-GACGCTATGA 33
consensus_8695#1      CCACCAGGCTTTTTTAAATTTTGCCTTTATTCACTTTTGAGGTTTTATGCGACGCTATGA 60
                                                     **    *  **    * * **********

consensus_8695#0      CACTCAAGAAGACTTTGAGTT-AATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTT 92
consensus_8695#1      CACTCAAGAAGACTTTGAGTTCAATAATTTTCTTGTTGGCTATCTATTTCAAAGCATGTT 120
                      ********************* **************************************

consensus_8695#0      CAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGT 152
consensus_8695#1      CAACACTTGGTAATGACAGCACCAATAGTAATGTTTGCATTGAGTACCGTAAAAACGTGT 180
                      ************************************************************

consensus_8695#0      CGATATACGTTAAAAATATAATATACAACATGTCAATCAAAACCGCGCCCGTTTCCTTCT 212
consensus_8695#1      CGATATACGTTAAAAATATAATATACAACATGTCAGCCAAAACCGCGCCCGTTTCCTTCT 240
                      ***********************************  ***********************

consensus_8695#0      GTGG--TTGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGC 270
consensus_8695#1      GTGGAATAGGTGTAGTGAAACTGTATATAAGTTGAAAAAAGTACTAGGGAAGCAAGAGGC 300
                      ****  * ****************************************************

consensus_8695#0      TTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGCGAACACAGAGAGGGGTACAAT 330
consensus_8695#1      TTACAATGCAGATGGGAAGGCATGTGTTGATCTTCTGGTGGACA-----GAAGGTCTAAT 355
                      ************************************** * ***        ***  ***

consensus_8695#0      AGATTCTATCGACTTCATTTTCGATAAATGGAATCGTTCCTTCTGCTCCCATTGTCTTGA 390
consensus_8695#1      CACT-------------------------------------------------------- 359
                         *                                                        

consensus_8695#0      AGAATTTTCTTCCGATCAAAACACCAGTCTATCAACGGGTTCTTTCAATAACATAGAAGG 450
consensus_8695#1      ------------------------------------------------------------
                                                                                  

consensus_8695#0      GTCTAGACATCTTTTACACACGGATTCTCTATACAACTTGCAAGTCTACAGTAAAAACGT 510
consensus_8695#1      ------------------------------------------------------------
                                                                                  

consensus_8695#0      GCGTACATTCTTCGAAAAGCTTGATGATGCTTTAAGTTGTTTCATGCAGTTCATCAATAA 570
consensus_8695#1      ------------------------------------------------------------
                                                                                  

consensus_8695#0      TCCCAACATATCCATTCTTAATGTATTAAATTTCCCTTCGTCCAGCACCTTGAATATCAG 630
consensus_8695#1      ------------------------------------------------------------
                                                                                  

consensus_8695#0      TTCGACGGTTTGTCATAATTGTTCAGCAGCATATTATGGTCTCTTAGATTATTACACCAA 690
consensus_8695#1      ------------------------------------------------------------
                                                                                  

consensus_8695#0      TAATCTTCTAAGATAT 706
consensus_8695#1      ----------------