These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 390 fasta sequence [TTCTTCAAGAAGAAAACGTGTGTAAACATGG-ATCGTCAGCTGACAGAACAAGAAATGCGCACTATTTTTGACCACAT-GGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAG-AATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAAGTTTGCATGAATTTATGAAAGCATTTTC-GTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATAC-GAAGATAAATATTTGGTTGGCGTATAATTTCAAATG-TTTAATCAACAATTTTATAGATTTACTAAAATTATTAAATGAAAATG-CCTTT-AATAAAAACATAATAATAAATT] [-] EMBL CD189926 [TTCTTCAAGAAGAAAACGTGTGTAAACATGG ATCGTCAGCTGACAGAACAAGAAATGCGCACTATTTTTGACCACAT GGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAG AATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAAGTTTGCATGAATTTATGAAAGCATTTTC GTCACAAAGAAGATCCTTTA ] [+] EMBL AA559693 [ GTGTAAACATGGNATCGTCAGCTGACAGAACAAGAAATGCGCACTATTTTTGACCACNT GGATNGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAAATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAAGTTTGCATGAATTTATGAAAGCATTTTC GTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATAC GAAGATAAATATTTGGTNGGtc ] [+] EMBL AA559449 [ ATCGTCAGCTGACAGAACAAGAAATGCGCACTATTTTTGACCACNT GGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACNCGATGCGAGAGTCNCAAATAGAGAANTCAAAG AATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAANTTTGCATGAATTTATGAAAGCATTTNC GTCACAAAGAAGATCCTTTACTACAGACTTCGGGACAATAC GAAGATAAATNTTTGGTTGTCGTATAATTTCAAATGTTTTAATCAA ] [+] EMBL AA559537 [ GCACTATTTTTGACCACATGGGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAATATTTTTTAAGACTACCCGATG ] [-] EMBL AA999309 [ ACACGATGCAAGAGTCCCAAATAGAGAAGTCAAAG AATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAATAAGTTNGCANGAATTTATGAAAGCATTTTC GTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATAC GAAGATAAATATTTGGTTGTCGTATAATTTCAAATG TTTAATCAACAATTTTATAGATTTACTAAAATTATTAAATGAAAATG CCTTT AATAAAAACATAATAATAAATT] [+] EMBL AA952782 [ ATTTATGAAAGCATTTTCTGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACTGAAGATAAATATTTGGTTTGCGTATAATTTCAAATG TTTAATCAACAATTTTATAGATTTACTAAAATTATTAAATG AAATGTCCTTTCAATAAAAACAT ] consensusID : consensus_8696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [ACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAAATAAGTTTCGATGAATTTATGAAAAGCATTTTCGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACGAATATAAATATTTGGTTGTCGTATAATTCAATGTTAATCAACAATTTATAGATTCATAAATTATTAATGAAATGCTTATAAACATATATAATTGTCGTCAAAAA] [+] EMBL AA952799 [ACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGTAAGCTTGACGAAAGTGGAGACGGTCAAAATAAGTTTCGATGAATTTATGAAAAGCATTTTCGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACGAATATAAATATTTGGTTGTCGTATAATTCAATGTTAATCAACAATTTATAGATTCATAAATTATTAATGAAATGCTTATAAACATATATAATTGTCGTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8696#0 TTCTTCAAGAAGAAAACGTGTGTAAACATGGATCGTCAGCTGACAGAACAAGAAATGCGC 60 consensus_8696#1 ------------------------------------------------------------ consensus_8696#0 ACTATTTTTGACCACATGGATAGGAATCACAATGGATACGTGACTGCTAAAGAACTGAAA 120 consensus_8696#1 ------------------------------------------------------------ consensus_8696#0 TATTTTTTAAGACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGT 180 consensus_8696#1 -----------ACTACACGATGCGAGAGTCACAAATAGAGAAGTCAAAGAATTCATTCGT 49 ************************************************* consensus_8696#0 AAGCTTGACGAAAGTGGAGACGGTCAAA-TAAGTTTGCATGAATTTATGAAA-GCATTTT 238 consensus_8696#1 AAGCTTGACGAAAGTGGAGACGGTCAAAATAAGTTTCGATGAATTTATGAAAAGCATTTT 109 **************************** ******* ************** ******* consensus_8696#0 CGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACGAAGATAAATATTTGGTT 298 consensus_8696#1 CGTCACAAAGAAGATCCTTTACTACAGACTTCAGGACAATACGAATATAAATATTTGGTT 169 ********************************************* ************** consensus_8696#0 GGCGTATAATTTCAAATGTTTAATCAACAATTTTATAGATTTACTAAAATTATTAAATGA 358 consensus_8696#1 GTCGTATAATTC--AATGTT-AATCAACAATTT-ATAGATTCAT--AAATTATTAA--TG 221 * ********* ****** ************ ******* * ********** consensus_8696#0 AAATGCCTTTAATAAAAACATAATAATAAATT---- 390 consensus_8696#1 AAATGCTTATAA-ACATATATAATTGTCGTCAAAAA 256 ****** * *** * * * ***** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||