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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 973 fasta sequence
[TAAAGTTTATCTGTT-TCATTGATTAATAAATACTTGGCGGTAAATAACATATTAGTAAAACAACGATACTTCAAAGTTCAAATAATAATAATAATAATAAAAGATAAATAAGAAATAAATAAACAATAATAGTAACAACAACTCAAGGATAATTTAACACGGAAAAATAACAAAAAAATAGGATATGAAAAGAAATATCACCAAGTCAGTTACAACGTAAAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACACACACACGAAAACAAGAACAAAAATATACAATCACAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGATAATGACAGTAATGTGGGCAACTCTTTAACTTGATAAAGCGGATGAATTCGAAATTTGTTATTAGAATCCTTCCACTCATTTTCGTTGCCCACTTCAATCATTATAAATAAATCATTATCTTTAGTAACTCCAATCTTACTTTCTATAATAGATTCACATTTACTACAATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTG-AT-GTG-CTAATTCAATTTGACTAGCAAGTTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC]
[+] EMBL CD073693 [TAAAGTTTATCTGTT TCATTGATTAATAAATACTTGGCGGTAAATAACATATTAGTAAAACAACGATACTTCAAAGTTCAAATAATAATAATAATAATAAAAGATAAATAAGAAATAAATAAACAATAATAGTAACAACAACTCAAGGATAATTTAACACGGAAAAATAACAAAAAAATAGGATATGAAAAGAAATATCACCAAGTCAGTTACAACGTAAAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACACACACACGAAAACAAGAACAAAAATATACAATCACAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGA ]
[+] EMBL CD077194 [TAAAGTTTATCTGTTAACATTGATTAATAAATATTTGGCGGTAAATAACATATTAGTAGAACAACGATACTTCAAAGTTCAAATAATAATAATAATAATAAAAGATAAATAAGAAATAAATAAACAATAATAGTAACAACAACTCAAGGATAATTTAACACGGAAAAATAACAAAAAAATAGGATATGAAAAGAAATATCACCAAGTCAGTTACAACGTAGAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACACACACACGAAAACAAGAACAAAAATATACAATCACAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAA ]
[-] EMBL CD079987 [ AGAACAAAAATATACAATCCCAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGATAATGACAGTAATGTGGGCAACTCTTTAACTTGATAAAGCGGATGAATTCGAAATTTGTTATTAGAATCCTTCCACTCATTTTCGTTGCCCACTTCAATCATTATAAATAAATCATTATCTTTAGTAACTCCAATCTTACTTTCTATAATAGATTCACATTTACTACAATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTG AT GTG CTAATTCAATTTGACTAGCAAGTTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC]
[-] EMBL CD084196 [ ATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCACGAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAAAACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATTTAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGATAATGACAGTAATGTGGGCAACTCTTTAACTTGATAAAGCGGATGAATTCGAAATTTGTTATTAGAATCCTTCCACTCATTTTCGTTGCCCACTTCAATCATTATAAATAAATCATTATCTTTAGTAACTCCAATCTTACTTTCTATAATAGATTCACATTTACTACAATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTGCCTCGTGCCGAATTCgtgcc ]
consensusID : consensus_8698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence
[GGGGTTACCCCCCTGTGGCCCCCCCCCCGGGGTTTTTCGCGGGGAACAACAAAATGGTTTGGAAAAAATTCCCCCCGCGTTTCGGGGAACCCGGGATAAATAGCGGGCCCAGGACAAGTGGGTCCCCCATTAGAGCCCCCCCCCCCCCCAAAACAGCAAAAATTCCTTCCCAAAATTCGGATAAAAAAAAGGTTAACTTTTTTTCCCCCCCCAAATTTTTGCGAAGATCCCAGGCGGGTTGGTTATAACGCTTTGATAAACAGAATTCCTATTCCTTTCAATAAATAGAGTCCCGAATTTAGGGCGTGTAATCCAGGTTAAGCCAGATAAATGATATTTTTCATTGGATAACCACCAGCAACACACATTTCANNNTGCCTTCAAGTAAATTTTGCACATNTGTGAAATTTAAGCATGATTTACTTCAAGACGATAACTATATGTGTTGTCCATTAAAGATGATAATGCAGTAATGTGGCACTCTCTATCTTGTAAAAAANNNNAATCGGGACGGGGGGCAAAGTTATACCCTCCCCTTCGGGGCCGGCGCCCATCCCATAAAAAATAAAAATATTTTGGGACNCCTCTCTTNCCTTTTCTAAAAGAAAACCACTTCANACCATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTGATGTGCTAATTCAATTTGACTAGCAAGCTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC]
[-] EMBL CD079419 [GGGGTTACCCCCCTGTGGCCCCCCCCCCGGGGTTTTTCGCGGGGAACAACAAAATGGTTTGGAAAAAATTCCCCCCGCGTTTCGGGGAACCCGGGATAAATAGCGGGCCCAGGACAAGTGGGTCCCCCATTAGAGCCCCCCCCCCCCCCAAAACAGCAAAAATTCCTTCCCAAAATTCGGATAAAAAAAAGGTTAACTTTTTTTCCCCCCCCAAATTTTTGCGAAGATCCCAGGCGGGTTGGTTATAACGCTTTGATAAACAGAATTCCTATTCCTTTCAATAAATAGAGTCCCGAATTTAGGGCGTGTAATCCAGGTTAAGCCAGATAAATGATATTTTTCATTGGATAACCACCAGCAACACACATTTCANNNTGCCTTCAAGTAAATTTTGCACATNTGTGAAATTTAAGCATGATTTACTTCAAGACGATAACTATATGTGTTGTCCATTAAAGATGATAATGCAGTAATGTGGCACTCTCTATCTTGTAAAAAANNNNAATCGGGACGGGGGGCAAAGTTATACCCTCCCCTTCGGGGCCGGCGCCCATCCCATAAAAAATAAAAATATTTTGGGACNCCTCTCTTNCCTTTTCTAAAAGAAAACCACTTCANACCATCCTCTGACCAACTATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTGATGTGCTAATTCAATTTGACTAGCAAGCTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC]
consensusID : consensus_8698#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[TAAAGTTTATTTGTTAACATTGATTAATAAATATTTGGCGGTAAATAACATATTAGTACAACAACGATACTTCAAAGTTCAAATAATATTAATAATAATAAAAGATAATTAAGAAATAAATAAACAATAATAGTAACAACAACTCAGGGATAATTTAACACGGAAAAATAACAAAAAAATAGGGTATGAAAAGAAATATCACCAAGTCAGTTAGTCACTCAGTTACAACGTATAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACTCACACACGAGAACAATAACATAATTATACACTCTCAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCACAATTTC]
[+] EMBL CD077213 [TAAAGTTTATTTGTTAACATTGATTAATAAATATTTGGCGGTAAATAACATATTAGTACAACAACGATACTTCAAAGTTCAAATAATATTAATAATAATAAAAGATAATTAAGAAATAAATAAACAATAATAGTAACAACAACTCAGGGATAATTTAACACGGAAAAATAACAAAAAAATAGGGTATGAAAAGAAATATCACCAAGTCAGTTAGTCACTCAGTTACAACGTATAACCAGGCATATATATATGCATCGGTCCAAGTTGACATACGTCGTTACCACCAAGTATAACGCACACACACTCACACACGAGAACAATAACATAATTATACACTCTCAAGAAATGCGGAATGAAAAAAAAGAGAGTAAACTGACTTGATTCACACAACAGAATACTATGTCGATAGATACACATGGCGGTTGTGGTAATAATGCATCTGATGAAAGCACAATTTC]
consensusID : consensus_8698#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 131 fasta sequence
[ACGCCCATAATTTCGTGACCTCATATTCTATTCGAAAAGGAATTATGCAAATTCTGCTTTCATCAGATGCATTATTACCACAACGCCCATGTGTATTTATGCACATGATATTCTGTTGGTGTAATCAGTCA]
[+] EMBL AA952765 [ACGCCCATAATTTCGTGACCTCATATTCTATTCGAAAAGGAATTATGCAAATTCTGCTTTCATCAGATGCATTATTACCACAACGCCCATGTGTATTTATGCACATGATATTCTGTTGGTGTAATCAGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8698#0 TAAAGTTTATCTGTTT---CATTGATTAATAAATACTTGGCGGTAAATAACATATTAGTA 57
consensus_8698#2 TAAAGTTTATTTGTTAA--CATTGATTAATAAATATTTGGCGGTAAATAACATATTAGTA 58
consensus_8698#1 -GGGGTTACCCCCCTGTGGCCCCCCCCCCGGGGTTTTTCGCGGGGAACAACAAAATGGTT 59
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 AAACAACGATACTTCAAA-GTTCAAATAATAATAATAATAATAAAAGATAAATAAGAAAT 116
consensus_8698#2 CAACAACGATACTTCAAA-GTTCAAATAATATTAATAATAATAAAAGATAATTAAGAAAT 117
consensus_8698#1 TGGAAAAAATTCCCCCCGCGTTTCGGGGAACCCGGGATAAATAGCGGGCCCAGGACAAGT 119
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 AAATAAACAATAATAGTAACAAC-------AACTCAAGGATAATTTAACACGGAAAAATA 169
consensus_8698#2 AAATAAACAATAATAGTAACAAC-------AACTCAGGGATAATTTAACACGGAAAAATA 170
consensus_8698#1 GGGTCCCCCATTAGAGCCCCCCCCCCCCCCAAAACAGCAAAAATTCCTTCCCAAAATTCG 179
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 ACAAAAAAATAGGATA---------------TGAAA-----AGAAATATCAC---CAAGT 206
consensus_8698#2 ACAAAAAAATAGGGTA---------------TGAAA-----AGAAATATCAC---CAAGT 207
consensus_8698#1 GATAAAAAAAAGGTTAACTTTTTTTCCCCCCCCAAATTTTTGCGAAGATCCCAGGCGGGT 239
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 CAGTTA-------------CAACGTAAAACCAGGCATATATATATGCATCGGTCCAAGTT 253
consensus_8698#2 CAGTTAGT-CACTCAGTTACAACGTATAACCAGGCATATATATATGCATCGGTCCAAGTT 266
consensus_8698#1 TGGTTATAACGCTTTGATAAACAGAATTCCTATTCCTTTCAATAAATAGAGTCCCGAATT 299
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 GACA-TACGTCGTTACCACCAAGTATAACGCACACACACACACACACGAAAAC----AAG 308
consensus_8698#2 GACA-TACGTCGTTACCACCAAGTATAACGCACACACACTCACACACGAGAAC----AAT 321
consensus_8698#1 TAGGGCGTGTAATCCAGGTTAAGCCAGATAAATGATATTTTTCATTGGATAACCACCAGC 359
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 AACAAA-AATATACAAT---CACAAGAAA----TGCGGA-ATGAAAAAAAAGAGAGTAAA 359
consensus_8698#2 AACATA-ATTATACACT---CTCAAGAAA----TGCGGA-ATGAAAAAAAAGAGAGTAAA 372
consensus_8698#1 AACACACATTTCANNNTGCCTTCAAGTAAATTTTGCACATNTGTGAAATTTAAGCATGAT 419
consensus_8698#3 -ACGCCCATAATTTCGTGACCTCATATTC--TATTCGAAAAGGAATTATGCAAATTCTGC 57
** * * ** * * * * * *
consensus_8698#0 CTGACTTGATTCACACAACAGAATACTATGTCGAT-AGATAC-ACATGGCGGT--TGTGG 415
consensus_8698#2 CTGACTTGATTCACACAACAGAATACTATGTCGAT-AGATAC-ACATGGCGGT--TGTGG 428
consensus_8698#1 TTACTTCAAGACG-ATAACTATATGTGTTGTCCATTAAAGATGATAATGCAGTAATGTGG 478
consensus_8698#3 TTTCATC-AGATGCATTATTAC-CACAACGCCCAT---GTGTATTTATGCA----CATGA 108
* * * * * * * ** ** **
consensus_8698#0 TAATAATGCATCTGATGAAAGCAGAATTTCATAATTCCTTTTCAATAAATATGAGGTCAC 475
consensus_8698#2 TAATAATGCATCTGATGAAAGCACAATTTC------------------------------ 458
consensus_8698#1 CACTC-TCTATCTTGTAAAAAANNNNAATCGGGACGGGGGGCAAAGTTATACCCTCCCCT 537
consensus_8698#3 TATTC---TGT-TGGTGTAATCAGTCA--------------------------------- 131
* * * * * **
consensus_8698#0 GAAATTATGGCGTTGTAATTCAAGTTTAAGACAGATAAATGAATATTTTTCATTGGATAA 535
consensus_8698#2 ------------------------------------------------------------
consensus_8698#1 TCGGGGCCGGCGCCCATCCCATAAAAAATAAAAATATTTTGGGACNCCTCTCTTNCCTTT 597
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 AACAACAGCAACAACAACATTTCAATTGCCTTCAAGTAAATTTTGCACATTTGTTGAATT 595
consensus_8698#2 ------------------------------------------------------------
consensus_8698#1 TCTAAAAGAAAACCACTTCANACCATCCTCTGACCAACTATCCCCAGTGTTCATATCAGT 657
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 TAAGCATGATTTACCTTCAAGACGATTAACTATATGTGTTTGTCCATTTAAAGATGATAA 655
consensus_8698#2 ------------------------------------------------------------
consensus_8698#1 TGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTGATGTGCTAATTCAATTTGACT 717
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 TGACAGTAATGTGGGCAACTCTTTAACTTGATAAAGCGGATGAATTCGAAATTTGTTATT 715
consensus_8698#2 ------------------------------------------------------------
consensus_8698#1 AGCAAGCTCATCAATAGATTGAACAAACAATTCTTCTATAGGCATATTACATGCAAC--- 774
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 AGAATCCTTCCACTCATTTTCGTTGCCCACTTCAATCATTATAAATAAATCATTATCTTT 775
consensus_8698#2 ------------------------------------------------------------
consensus_8698#1 ------------------------------------------------------------
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 AGTAACTCCAATCTTACTTTCTATAATAGATTCACATTTACTACAATCCTCTGACCAACT 835
consensus_8698#2 ------------------------------------------------------------
consensus_8698#1 ------------------------------------------------------------
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 ATCCCCAGTGTTCATATCAGTTGAACCAGAAAAATAAACGAATACAAGACGCCCATTTTG 895
consensus_8698#2 ------------------------------------------------------------
consensus_8698#1 ------------------------------------------------------------
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 ATGTGCTAATTCAATTTGACTAGCAAGTTCATCAATAGATTGAACAAACAATTCTTCTAT 955
consensus_8698#2 ------------------------------------------------------------
consensus_8698#1 ------------------------------------------------------------
consensus_8698#3 ------------------------------------------------------------
consensus_8698#0 AGGCATATTACATGCAAC 973
consensus_8698#2 ------------------
consensus_8698#1 ------------------
consensus_8698#3 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||