These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8704#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1587 fasta sequence [TTCTGCTACTACCCTGAAGACATCGCTCAGTTAAAAACACTTTTAAAACAACATGTTGATGACATGATAAATTTGTGTTCCCGGGATAAATGTAGTCCAGAAACTAAACCTTATTTAATCGAAGCAGAAATCTTATGTGAACTCGGTCATTTGNNNNNACCAACTTCAGATTCAGATCATTTACTAAGCTTCGTTACAGCTCATCAGAAAATTATTGTTATATCGGACAAATTAGATCGCCAGTTGAAAAAGTTAAATGATCATGTTAACAACACAAAACGTGCTATATCGGATTTGTATGACAAATNNNNNNNNNNNNNNNATTTACCTGGATATAATATACAGACAGATTCGTTATTAGAGGGTTTTGTTGCCTGGGTTTTCAATGAAACATCAGAAATGCTATGCTTTACAGTCATTCAAAGATGCTTCCTCATCGAGTTATGAACGTGCACTTTCTGTATATAAACATCAACACTTAAAAATATGTTCACAAAAGGCACATCATGTTATGCATGTTCCAAACGCTTCAAAATAACAAGAGTCATTACAGATCATATTATCTCCGAACACAATCCTTGTGATTTATGTTCAGTATGCTCAGAAAATCTATCAGTATATCCCACATTTGATTGGCTTGTGTGTTTTGAACATCACTGGTCCATTTCTGCCTCATCTAGTGTGAACAATGAGGAAATTGTTGATCTAACCGATGAAAAGGATTGTGGAAATTATGGCAGTTTAGTTCTTCTGTATAGCCCTGTTTCTATTGCTCTTCGACTTTGTATAAATCAAATTCAAGAGTATTTGGTTCAATTGGGAAAAATTCTTCAATCACATGGGAACCGAATAAATGAAGTCATTTCAAGCGTGAATCAATCTTTAATTCAACAACTACCTAGCTGTTTGATGGACTTCATCAATAAGATGTGCAGTTCACAAAATCCATCAATTGTTACCAATCATTCTGACTTCACCTATGACCTCTGC-ACATATTGTGTGTTCTCCTCACATTCANAGTGAATTTGATGCCGTGTATTCAATTGATCGAACATATTTTATCATCACTGTGTGTATTTAACGATATTAACGAGAATACTCTACAAAAATTAGGTTCTTAATTTTTTTTCGAGTAACTCTATATAAAGCTTGTTTACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTTTTCATACATTATTTGTCAGCGTTTGTTTTATTATCTAAGTTGACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTGGTTAACATGGTTCTTTGTTTACTACTTTTTCTTTAGTATTCATTATCTTAACTATTCATAGTTTTCTACTTCTGTGTATATTCATCAACTATTTTTTTTCCTATACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCACGTTATTTCGTCTGTTTCACCGCATATTTTCGACTTCATTTATATTTTTACTGCTTTCCTTTCTCGTAACTCATTGTGAAATTGTCATCATTTACATACTTTTAATTTATT] [+] EMBL CD080943 [TTCTGCTACTACCCTGAAGACATCGCTCAGTTAAAAACACTTTTAAAACAACATGTTGATGACATGATAAATTTGTGTTCCCGGGATAAATGTAGTCCAGAAACTAAACCTTATTTAATCGAAGCAGAAATCTTATGTGAACTCGGTCATTTGNNNNNACCAACTTCAGATTCAGATCATTTACTAAGCTTCGTTACAGCTCATCAGAAAATTATTGTTATATCGGACAAATTAGATCGCCAGTTGAAAAAGTTAAATGATCATGTTAACAACACAAAACGTGCTATATCGGATTTGTATGACAAATNNNNNNNNNNNNNNNATTTACCTGGATATAATATACAGACAGATTCGTTATTAGAGGGTTTTGTTGCCTGGGTTTTCAATGAAACATCAGAAATGCTATGCTTTACAGTCATTCAAAGATGCTTCCTCATCGAGTTATGAACGTGCACTTTCTGTATATAAACATCAACACTTAAAAATATGTTCACAAAAGGCACATCATGTTATGCATGTTCCAAACGCTTCAAAATAACAAGAGTCATTACAGATCATATTATCTCCGAACACAATCCTTGTGATTTATGTTCAGTATGCTCAGAAAATCTATCAGTATATCCCACATTTGA ] [+] EMBL CD078811 [ atCATTTTGATTATCT ATCGTCAACACTTAAAAATATGTTCACAAAAGGCACATCATGTTATGCATGTTCCAAACGCTTCAAAATAACAAGAGTCATTACAGATCATATTATCTCCGAACACAATCCTTGTGATTTATGTTCAGTATGCTCAGAAAATCTATCAGTATATCCCACATTTGATTGGCTTGTGTGTTTTGAACATCACTGGTCCATTTCTGCCTCATCTAGTGTGAACAATGAGGAAATTGTTGATCTAACCGATGAAAAGGATTGTGGAAATTATGGCAGTTTAGTTCTTCTGTATAGCCCTGTTTCTATTGCTCTTCGACTTTGTATAAATCAAATTCAAGAGTATTTGGTTCAATTGGGAAAAATTCTTCAATCACATGGGAACCGAATAAATGAAGTCATTTCAAGCGTGAATCAATCTTTAATTCAACAACTACCTAGCTGTTTGATGGACTTCATCAATAAGATGTGCAGTTCACAAAATCCATCAATTGTTACCAATCATTCTGACTTCACCTATGACCTCTGC ACATATTGTGTGTTCTCCTCACATTCANAGTGAATTTGATGCCGTGTATTCAATTGATCGAACATATTTTATCATC ] [-] EMBL CD073270 [ AGGATTGTGGAAATTATGGCAGTTTAGTTCTTCTGTATAGCCCTGTTTCTATTGCTCTTCGACTTTGTATAAATCAAATTCAAGAGTATTTGGTTCAATTGGGAAAAATTCTTCAATCACATGGGAACCGAATAAATGAAGTCATTTCAAGCGTGAATCAATCTTTAATTCAACAACTACCTAGCTGTTTGATGGACTTCATCAATAAGATGTGCAGTTCACAAAATCCATCAATTGTTACCAATCATTCTGACTTCACCTATGACCTCTGCAACATATTGTGTGTTCTCCTCACATTCAAAGTGAATTTGATGCCGTGTATTCAATTGATCGAACATATTTTATCATCACTGTGTGTATTTAACGATATTAACGAGAATACTCTACAAAAATTAGGTTCTTAATTTTTTTTCGAGTAACTCTATATAAAGCTTGTTTACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTTTTCATACATTATTTGTCAGCGTTTGTTTTATTATCTAAGTTGACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTGGTTA ] [-] EMBL CD069499 [ TTATTTGTCAGCGTTTGTTTTATNATCTAAGTTGACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTGGTTAACATGGTTCTTTGTTTACTACTTTTTCTTTAGTATTCATTATCTTAACTATTCATAGTTTTCTACTTCTGTGTATATTCATCAACTATTTTTTTTCCTATACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTC ] [+] EMBL AA629480 [ TTGACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTGGTTAACATGGTTCTTTGTTTACTACTTTTTCTTTAGTATTCATTATCTTAACTATTCATAGTTTTCTACTTCTGTGTATATTCATCAACTATTTTTTTTCCTATACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCACGTTATTTCGTCTGTTTCACCGCATATTTTCGACTTCATTTATATTTTTACTGCTTTCCTTTCTCGTAACTCATTGTGAAATTGTCATCATTTACATACTTTTAATTTATT] consensusID : consensus_8704#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [ACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTTTTCAAACATTATTTGTCAGGGTTTGTTTTATTATTTAAGTTGACGATTGTTGTTGGTAAGTTTTGAAATTTTTAAATCGGTACGGAATTAAAAAAAGATTTGGGTAACAAGGTTTTTTGTTTACTACCTTTTCTTTAGGATTCATTATTTTAACTATTCAAAGTTTTTTACTTCGGGGGAAATTCACCAACTATTTTTTTTCCTAAACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCCCGGTATTTTGTCTGTTTCCCCGCAAATTTTTGACTTCATTTAAATTTTTACGGCTTTCCTTTTTCGTAACTCATTGGGAAATTGTCATCATTTACAAACTTTTAATTTATTTAAATTTCCAAGACTTTTGTTATTACTGATTTGAAAATTAATAAAGTATT] [-] EMBL CD074777 [ACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTTTTCAAACATTATTTGTCAGGGTTTGTTTTATTATTTAAGTTGACGATTGTTGTTGGTAAGTTTTGAAATTTTTAAATCGGTACGGAATTAAAAAAAGATTTGGGTAACAAGGTTTTTTGTTTACTACCTTTTCTTTAGGATTCATTATTTTAACTATTCAAAGTTTTTTACTTCGGGGGAAATTCACCAACTATTTTTTTTCCTAAACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCCCGGTATTTTGTCTGTTTCCCCGCAAATTTTTGACTTCATTTAAATTTTTACGGCTTTCCTTTTTCGTAACTCATTGGGAAATTGTCATCATTTACAAACTTTTAATTTATTTAAATTTCCAAGACTTTTGTTATTACTGATTTGAAAATTAATAAAGTATT] consensusID : consensus_8704#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [GTCGGATTTGTATGACAAATTCCTTCCTCATCATGATTTACCTGGATATGATATACAGACAGATTCGTTATTAGAGGTTTTGTCGCCTGGGTTTTCAATGAAACATCAGAAATGCTATGCTTTACAG] [+] EMBL CD084130 [GTCGGATTTGTATGACAAATTCCTTCCTCATCATGATTTACCTGGATATGATATACAGACAGATTCGTTATTAGAGGTTTTGTCGCCTGGGTTTTCAATGAAACATCAGAAATGCTATGCTTTACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8704#0 TTCTGCTACTACCCTGAAGACATCGCTCAGTTAAAAACACTTTTAAAACAACATGTTGAT 60 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 --------ACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTT 52 consensus_8704#0 GACATGATAAATTTGTGTTCCCGGGATAAATGTAGTCCAGAAACTAAACCTTATTTAATC 120 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 TTCAAACATTATTTGTCAGGGTTTGTTTTATTATTTAAGTTGACGATTGTTGTTGGTAAG 112 consensus_8704#0 GAAGCAGAAATCTTATGTGAACTCGGTCATTTGNNNNNACCAACTTCAGATTCAGATCAT 180 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 TTTTGAAATTTTTAAATCGGTACGGAATTAAAAAAAGATTTGGGTAACAAGGTTTTTTGT 172 consensus_8704#0 TTACTAAGCTTCGTTACAGCTCATCAGAAAATTATTGTTATATCGGACAAATTAGATCGC 240 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 TTACTACCTTTTCTTTAGGATTCATTATTTTAACTATTCAAAGTTTTTTACTTCGGGGGA 232 consensus_8704#0 CAGTTGAAAAAGTTAAATGATCATGTTAACAACACAAAACGTGCTATATCGGATTTGTAT 300 consensus_8704#2 -----------------------------------------------GTCGGATTTGTAT 13 consensus_8704#1 AATTCACCAACTATTTTTTTTCCTAAACCTGAGTATATGGGTAGATGATGATATGCAGAT 292 * ** ** consensus_8704#0 GACAAATNNN-NNNNNNNNNNNNATTTACCTGGATATAATATA----CAGACAGATTCGT 355 consensus_8704#2 GACAAATTCC-TTCCTCATCATGATTTACCTGGATATGATATA----CAGACAGATTCGT 68 consensus_8704#1 GTTGAATTGCATTTGTCTTTACTTTTCCCCGGTATTTTGTCTGTTTCCCCGCAAATTTTT 352 * *** ** ** * ** * * * * ** *** * consensus_8704#0 TATTAGA----GGGTTTTGTTGCCTGGGTTTTCAATGAAACATCAGAAA--TGCTATGCT 409 consensus_8704#2 TATTAGA----GG-TTTTGTCGCCTGGGTTTTCAATGAAACATCAGAAA--TGCTATGCT 121 consensus_8704#1 GACTTCATTTAAATTTTTACGGCTTTCCTTTTTCGTAACTCATTGGGAAATTGTCATCAT 412 * * * **** ** * **** * * *** * ** ** ** * consensus_8704#0 TTACAGTCATTCAAAGATGCTTCCTCATCGAGTTATGAACGTGCACTTTCTGTATATAAA 469 consensus_8704#2 TTACAG------------------------------------------------------ 127 consensus_8704#1 TTACAAACTTTTAATTTATTTAAATTTCCAAGACTTTTGTTATTACTGATTTGAAAATTA 472 ***** consensus_8704#0 CATCAACACTTAAAAATATGTTCACAAAAGGCACATCATGTTATGCATGTTCCAAACGCT 529 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ATAAAGTATT-------------------------------------------------- 482 consensus_8704#0 TCAAAATAACAAGAGTCATTACAGATCATATTATCTCCGAACACAATCCTTGTGATTTAT 589 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 GTTCAGTATGCTCAGAAAATCTATCAGTATATCCCACATTTGATTGGCTTGTGTGTTTTG 649 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 AACATCACTGGTCCATTTCTGCCTCATCTAGTGTGAACAATGAGGAAATTGTTGATCTAA 709 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 CCGATGAAAAGGATTGTGGAAATTATGGCAGTTTAGTTCTTCTGTATAGCCCTGTTTCTA 769 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 TTGCTCTTCGACTTTGTATAAATCAAATTCAAGAGTATTTGGTTCAATTGGGAAAAATTC 829 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 TTCAATCACATGGGAACCGAATAAATGAAGTCATTTCAAGCGTGAATCAATCTTTAATTC 889 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 AACAACTACCTAGCTGTTTGATGGACTTCATCAATAAGATGTGCAGTTCACAAAATCCAT 949 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 CAATTGTTACCAATCATTCTGACTTCACCTATGACCTCTGCACATATTGTGTGTTCTCCT 1009 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 CACATTCANAGTGAATTTGATGCCGTGTATTCAATTGATCGAACATATTTTATCATCACT 1069 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 GTGTGTATTTAACGATATTAACGAGAATACTCTACAAAAATTAGGTTCTTAATTTTTTTT 1129 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 CGAGTAACTCTATATAAAGCTTGTTTACCAAGCAGTCACGTTTAATTATTCGCAATTTTT 1189 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 TCAAACATTATTGTTTTTTTCATACATTATTTGTCAGCGTTTGTTTTATTATCTAAGTTG 1249 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 ACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTG 1309 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 GTTAACATGGTTCTTTGTTTACTACTTTTTCTTTAGTATTCATTATCTTAACTATTCATA 1369 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 GTTTTCTACTTCTGTGTATATTCATCAACTATTTTTTTTCCTATACCTGAGTATATGGGT 1429 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 AGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCACGTTATTTCGTCT 1489 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 GTTTCACCGCATATTTTCGACTTCATTTATATTTTTACTGCTTTCCTTTCTCGTAACTCA 1549 consensus_8704#2 ------------------------------------------------------------ consensus_8704#1 ------------------------------------------------------------ consensus_8704#0 TTGTGAAATTGTCATCATTTACATACTTTTAATTTATT 1587 consensus_8704#2 -------------------------------------- consensus_8704#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||