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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8704#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1587 fasta sequence
[TTCTGCTACTACCCTGAAGACATCGCTCAGTTAAAAACACTTTTAAAACAACATGTTGATGACATGATAAATTTGTGTTCCCGGGATAAATGTAGTCCAGAAACTAAACCTTATTTAATCGAAGCAGAAATCTTATGTGAACTCGGTCATTTGNNNNNACCAACTTCAGATTCAGATCATTTACTAAGCTTCGTTACAGCTCATCAGAAAATTATTGTTATATCGGACAAATTAGATCGCCAGTTGAAAAAGTTAAATGATCATGTTAACAACACAAAACGTGCTATATCGGATTTGTATGACAAATNNNNNNNNNNNNNNNATTTACCTGGATATAATATACAGACAGATTCGTTATTAGAGGGTTTTGTTGCCTGGGTTTTCAATGAAACATCAGAAATGCTATGCTTTACAGTCATTCAAAGATGCTTCCTCATCGAGTTATGAACGTGCACTTTCTGTATATAAACATCAACACTTAAAAATATGTTCACAAAAGGCACATCATGTTATGCATGTTCCAAACGCTTCAAAATAACAAGAGTCATTACAGATCATATTATCTCCGAACACAATCCTTGTGATTTATGTTCAGTATGCTCAGAAAATCTATCAGTATATCCCACATTTGATTGGCTTGTGTGTTTTGAACATCACTGGTCCATTTCTGCCTCATCTAGTGTGAACAATGAGGAAATTGTTGATCTAACCGATGAAAAGGATTGTGGAAATTATGGCAGTTTAGTTCTTCTGTATAGCCCTGTTTCTATTGCTCTTCGACTTTGTATAAATCAAATTCAAGAGTATTTGGTTCAATTGGGAAAAATTCTTCAATCACATGGGAACCGAATAAATGAAGTCATTTCAAGCGTGAATCAATCTTTAATTCAACAACTACCTAGCTGTTTGATGGACTTCATCAATAAGATGTGCAGTTCACAAAATCCATCAATTGTTACCAATCATTCTGACTTCACCTATGACCTCTGC-ACATATTGTGTGTTCTCCTCACATTCANAGTGAATTTGATGCCGTGTATTCAATTGATCGAACATATTTTATCATCACTGTGTGTATTTAACGATATTAACGAGAATACTCTACAAAAATTAGGTTCTTAATTTTTTTTCGAGTAACTCTATATAAAGCTTGTTTACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTTTTCATACATTATTTGTCAGCGTTTGTTTTATTATCTAAGTTGACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTGGTTAACATGGTTCTTTGTTTACTACTTTTTCTTTAGTATTCATTATCTTAACTATTCATAGTTTTCTACTTCTGTGTATATTCATCAACTATTTTTTTTCCTATACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCACGTTATTTCGTCTGTTTCACCGCATATTTTCGACTTCATTTATATTTTTACTGCTTTCCTTTCTCGTAACTCATTGTGAAATTGTCATCATTTACATACTTTTAATTTATT]
[+] EMBL CD080943 [TTCTGCTACTACCCTGAAGACATCGCTCAGTTAAAAACACTTTTAAAACAACATGTTGATGACATGATAAATTTGTGTTCCCGGGATAAATGTAGTCCAGAAACTAAACCTTATTTAATCGAAGCAGAAATCTTATGTGAACTCGGTCATTTGNNNNNACCAACTTCAGATTCAGATCATTTACTAAGCTTCGTTACAGCTCATCAGAAAATTATTGTTATATCGGACAAATTAGATCGCCAGTTGAAAAAGTTAAATGATCATGTTAACAACACAAAACGTGCTATATCGGATTTGTATGACAAATNNNNNNNNNNNNNNNATTTACCTGGATATAATATACAGACAGATTCGTTATTAGAGGGTTTTGTTGCCTGGGTTTTCAATGAAACATCAGAAATGCTATGCTTTACAGTCATTCAAAGATGCTTCCTCATCGAGTTATGAACGTGCACTTTCTGTATATAAACATCAACACTTAAAAATATGTTCACAAAAGGCACATCATGTTATGCATGTTCCAAACGCTTCAAAATAACAAGAGTCATTACAGATCATATTATCTCCGAACACAATCCTTGTGATTTATGTTCAGTATGCTCAGAAAATCTATCAGTATATCCCACATTTGA ]
[+] EMBL CD078811 [ atCATTTTGATTATCT ATCGTCAACACTTAAAAATATGTTCACAAAAGGCACATCATGTTATGCATGTTCCAAACGCTTCAAAATAACAAGAGTCATTACAGATCATATTATCTCCGAACACAATCCTTGTGATTTATGTTCAGTATGCTCAGAAAATCTATCAGTATATCCCACATTTGATTGGCTTGTGTGTTTTGAACATCACTGGTCCATTTCTGCCTCATCTAGTGTGAACAATGAGGAAATTGTTGATCTAACCGATGAAAAGGATTGTGGAAATTATGGCAGTTTAGTTCTTCTGTATAGCCCTGTTTCTATTGCTCTTCGACTTTGTATAAATCAAATTCAAGAGTATTTGGTTCAATTGGGAAAAATTCTTCAATCACATGGGAACCGAATAAATGAAGTCATTTCAAGCGTGAATCAATCTTTAATTCAACAACTACCTAGCTGTTTGATGGACTTCATCAATAAGATGTGCAGTTCACAAAATCCATCAATTGTTACCAATCATTCTGACTTCACCTATGACCTCTGC ACATATTGTGTGTTCTCCTCACATTCANAGTGAATTTGATGCCGTGTATTCAATTGATCGAACATATTTTATCATC ]
[-] EMBL CD073270 [ AGGATTGTGGAAATTATGGCAGTTTAGTTCTTCTGTATAGCCCTGTTTCTATTGCTCTTCGACTTTGTATAAATCAAATTCAAGAGTATTTGGTTCAATTGGGAAAAATTCTTCAATCACATGGGAACCGAATAAATGAAGTCATTTCAAGCGTGAATCAATCTTTAATTCAACAACTACCTAGCTGTTTGATGGACTTCATCAATAAGATGTGCAGTTCACAAAATCCATCAATTGTTACCAATCATTCTGACTTCACCTATGACCTCTGCAACATATTGTGTGTTCTCCTCACATTCAAAGTGAATTTGATGCCGTGTATTCAATTGATCGAACATATTTTATCATCACTGTGTGTATTTAACGATATTAACGAGAATACTCTACAAAAATTAGGTTCTTAATTTTTTTTCGAGTAACTCTATATAAAGCTTGTTTACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTTTTCATACATTATTTGTCAGCGTTTGTTTTATTATCTAAGTTGACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTGGTTA ]
[-] EMBL CD069499 [ TTATTTGTCAGCGTTTGTTTTATNATCTAAGTTGACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTGGTTAACATGGTTCTTTGTTTACTACTTTTTCTTTAGTATTCATTATCTTAACTATTCATAGTTTTCTACTTCTGTGTATATTCATCAACTATTTTTTTTCCTATACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTC ]
[+] EMBL AA629480 [ TTGACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTGGTTAACATGGTTCTTTGTTTACTACTTTTTCTTTAGTATTCATTATCTTAACTATTCATAGTTTTCTACTTCTGTGTATATTCATCAACTATTTTTTTTCCTATACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCACGTTATTTCGTCTGTTTCACCGCATATTTTCGACTTCATTTATATTTTTACTGCTTTCCTTTCTCGTAACTCATTGTGAAATTGTCATCATTTACATACTTTTAATTTATT]
consensusID : consensus_8704#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[ACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTTTTCAAACATTATTTGTCAGGGTTTGTTTTATTATTTAAGTTGACGATTGTTGTTGGTAAGTTTTGAAATTTTTAAATCGGTACGGAATTAAAAAAAGATTTGGGTAACAAGGTTTTTTGTTTACTACCTTTTCTTTAGGATTCATTATTTTAACTATTCAAAGTTTTTTACTTCGGGGGAAATTCACCAACTATTTTTTTTCCTAAACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCCCGGTATTTTGTCTGTTTCCCCGCAAATTTTTGACTTCATTTAAATTTTTACGGCTTTCCTTTTTCGTAACTCATTGGGAAATTGTCATCATTTACAAACTTTTAATTTATTTAAATTTCCAAGACTTTTGTTATTACTGATTTGAAAATTAATAAAGTATT]
[-] EMBL CD074777 [ACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTTTTCAAACATTATTTGTCAGGGTTTGTTTTATTATTTAAGTTGACGATTGTTGTTGGTAAGTTTTGAAATTTTTAAATCGGTACGGAATTAAAAAAAGATTTGGGTAACAAGGTTTTTTGTTTACTACCTTTTCTTTAGGATTCATTATTTTAACTATTCAAAGTTTTTTACTTCGGGGGAAATTCACCAACTATTTTTTTTCCTAAACCTGAGTATATGGGTAGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCCCGGTATTTTGTCTGTTTCCCCGCAAATTTTTGACTTCATTTAAATTTTTACGGCTTTCCTTTTTCGTAACTCATTGGGAAATTGTCATCATTTACAAACTTTTAATTTATTTAAATTTCCAAGACTTTTGTTATTACTGATTTGAAAATTAATAAAGTATT]
consensusID : consensus_8704#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence
[GTCGGATTTGTATGACAAATTCCTTCCTCATCATGATTTACCTGGATATGATATACAGACAGATTCGTTATTAGAGGTTTTGTCGCCTGGGTTTTCAATGAAACATCAGAAATGCTATGCTTTACAG]
[+] EMBL CD084130 [GTCGGATTTGTATGACAAATTCCTTCCTCATCATGATTTACCTGGATATGATATACAGACAGATTCGTTATTAGAGGTTTTGTCGCCTGGGTTTTCAATGAAACATCAGAAATGCTATGCTTTACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8704#0 TTCTGCTACTACCCTGAAGACATCGCTCAGTTAAAAACACTTTTAAAACAACATGTTGAT 60
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 --------ACCAAGCAGTCACGTTTAATTATTCGCAATTTTTTCAAACATTATTGTTTTT 52
consensus_8704#0 GACATGATAAATTTGTGTTCCCGGGATAAATGTAGTCCAGAAACTAAACCTTATTTAATC 120
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 TTCAAACATTATTTGTCAGGGTTTGTTTTATTATTTAAGTTGACGATTGTTGTTGGTAAG 112
consensus_8704#0 GAAGCAGAAATCTTATGTGAACTCGGTCATTTGNNNNNACCAACTTCAGATTCAGATCAT 180
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 TTTTGAAATTTTTAAATCGGTACGGAATTAAAAAAAGATTTGGGTAACAAGGTTTTTTGT 172
consensus_8704#0 TTACTAAGCTTCGTTACAGCTCATCAGAAAATTATTGTTATATCGGACAAATTAGATCGC 240
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 TTACTACCTTTTCTTTAGGATTCATTATTTTAACTATTCAAAGTTTTTTACTTCGGGGGA 232
consensus_8704#0 CAGTTGAAAAAGTTAAATGATCATGTTAACAACACAAAACGTGCTATATCGGATTTGTAT 300
consensus_8704#2 -----------------------------------------------GTCGGATTTGTAT 13
consensus_8704#1 AATTCACCAACTATTTTTTTTCCTAAACCTGAGTATATGGGTAGATGATGATATGCAGAT 292
* ** **
consensus_8704#0 GACAAATNNN-NNNNNNNNNNNNATTTACCTGGATATAATATA----CAGACAGATTCGT 355
consensus_8704#2 GACAAATTCC-TTCCTCATCATGATTTACCTGGATATGATATA----CAGACAGATTCGT 68
consensus_8704#1 GTTGAATTGCATTTGTCTTTACTTTTCCCCGGTATTTTGTCTGTTTCCCCGCAAATTTTT 352
* *** ** ** * ** * * * * ** *** *
consensus_8704#0 TATTAGA----GGGTTTTGTTGCCTGGGTTTTCAATGAAACATCAGAAA--TGCTATGCT 409
consensus_8704#2 TATTAGA----GG-TTTTGTCGCCTGGGTTTTCAATGAAACATCAGAAA--TGCTATGCT 121
consensus_8704#1 GACTTCATTTAAATTTTTACGGCTTTCCTTTTTCGTAACTCATTGGGAAATTGTCATCAT 412
* * * **** ** * **** * * *** * ** ** ** *
consensus_8704#0 TTACAGTCATTCAAAGATGCTTCCTCATCGAGTTATGAACGTGCACTTTCTGTATATAAA 469
consensus_8704#2 TTACAG------------------------------------------------------ 127
consensus_8704#1 TTACAAACTTTTAATTTATTTAAATTTCCAAGACTTTTGTTATTACTGATTTGAAAATTA 472
*****
consensus_8704#0 CATCAACACTTAAAAATATGTTCACAAAAGGCACATCATGTTATGCATGTTCCAAACGCT 529
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ATAAAGTATT-------------------------------------------------- 482
consensus_8704#0 TCAAAATAACAAGAGTCATTACAGATCATATTATCTCCGAACACAATCCTTGTGATTTAT 589
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 GTTCAGTATGCTCAGAAAATCTATCAGTATATCCCACATTTGATTGGCTTGTGTGTTTTG 649
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 AACATCACTGGTCCATTTCTGCCTCATCTAGTGTGAACAATGAGGAAATTGTTGATCTAA 709
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 CCGATGAAAAGGATTGTGGAAATTATGGCAGTTTAGTTCTTCTGTATAGCCCTGTTTCTA 769
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 TTGCTCTTCGACTTTGTATAAATCAAATTCAAGAGTATTTGGTTCAATTGGGAAAAATTC 829
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 TTCAATCACATGGGAACCGAATAAATGAAGTCATTTCAAGCGTGAATCAATCTTTAATTC 889
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 AACAACTACCTAGCTGTTTGATGGACTTCATCAATAAGATGTGCAGTTCACAAAATCCAT 949
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 CAATTGTTACCAATCATTCTGACTTCACCTATGACCTCTGCACATATTGTGTGTTCTCCT 1009
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 CACATTCANAGTGAATTTGATGCCGTGTATTCAATTGATCGAACATATTTTATCATCACT 1069
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 GTGTGTATTTAACGATATTAACGAGAATACTCTACAAAAATTAGGTTCTTAATTTTTTTT 1129
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 CGAGTAACTCTATATAAAGCTTGTTTACCAAGCAGTCACGTTTAATTATTCGCAATTTTT 1189
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 TCAAACATTATTGTTTTTTTCATACATTATTTGTCAGCGTTTGTTTTATTATCTAAGTTG 1249
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 ACGATTGTTGTTGGTAAGTTTTGATATTTCTATATCGTTACGTAATTAATAATAGATCTG 1309
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 GTTAACATGGTTCTTTGTTTACTACTTTTTCTTTAGTATTCATTATCTTAACTATTCATA 1369
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 GTTTTCTACTTCTGTGTATATTCATCAACTATTTTTTTTCCTATACCTGAGTATATGGGT 1429
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 AGATGATGATATGCAGATGTTGAATTGCATTTGTCTTTACTTTTCCACGTTATTTCGTCT 1489
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 GTTTCACCGCATATTTTCGACTTCATTTATATTTTTACTGCTTTCCTTTCTCGTAACTCA 1549
consensus_8704#2 ------------------------------------------------------------
consensus_8704#1 ------------------------------------------------------------
consensus_8704#0 TTGTGAAATTGTCATCATTTACATACTTTTAATTTATT 1587
consensus_8704#2 --------------------------------------
consensus_8704#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||