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Schistosoma mansoni
cluster # 8707 cluster # 8707       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8707#0 length = 1116 sequences # 5  
consensus_8707#1 length = 258 sequences # 1  
consensus_8707#2 length = 216 sequences # 1  

consensusID : consensus_8707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1116
fasta sequence
                              [AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGTTTTGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGCTCTGAAGTGCATAGGAAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATT-AATACCTTCAGTTTGTTCCCCAG-ATAC-TTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATCAGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGAAGCTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTCAAATGTTAACCCAGTATTGTTTG-AATGACCTGCGCTTG-TTGATGAACTATTTTGATTCTTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGCGAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCACATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGATTGTTGAAAATATGCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTTGGCTTTCCATTTATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAACCTAGATAAGGGATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAATTATCATTCTGACTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA]

[+] EMBL CD170820             [AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGTTTTGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGCTCTGAAGTGCATAGGAAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATTAAATACCTTCAGTTTGTTCCCCAGAATACTTTTACGTATAGACTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGGATTGCATACTTGTATGGAATCGTTTATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD188807             [                                                                                                                                                                                    AAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATT AATACCTTCAGTTTGTTCCCAAG ATAC TTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD088746             [                                                                                                                                                                                                                                                                                                             TAC TTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAATTGGATACTTGTACGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATCAGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGAAGCTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTCAAATGTTAACCCAGTATTGTTTG AATGACCTGCGCTTG TTGATGAACTATTTTGATTCTTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGCGAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCACATAGATATGCATT                                                                                                                                                                                                                                                                      ]
[+] EMBL CD195889             [                                                                                                                                                                                                                                                                                                                                                                 TAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATCAGTGTAGGTAGTAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGANACTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTC AATGTTAACCCAGTATTGTTTGNNATGA CTGCGCTTGNNTGATG ACTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD159295             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TATTTTGATTCTTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGCGAAGTTTTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCACATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGATTGTTGAAAATATGCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTTGGCTTTCCATTTATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAACCTAGATAAGGGATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAATTATCATTCTGACTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA]


>consensus_8707#0 AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGT TTTGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTA CAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGCTCTGAAGTGCATAGG AAATCGGAATCCATCACATTTAGGGGATTTTTAGGTCTAGGTAATGTGGAGAATTCTCTC CGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATTAATACCTTCAGTTTGTTCCCCAGAT ACTTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTGTTTAAATTTGAA TTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATGTGTTTCGTCATC AGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCTTTACATGAGACA TTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTATTATGAACGAAG CTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCGTCAAATGTTAAC CCAGTATTGTTTGAATGACCTGCGCTTGTTGATGAACTATTTTGATTCTTTAAAATATTA CTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTTGTTCCGTATATT TTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGTTCTAAAATAAGC GAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATATAGCGTTGAGCA CATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGATTGTTGAAAATAT GCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTTGGCTTTCCATTT ATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAACCTAGATAAGGG ATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAATTATCATTCTGA CTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA



consensusID : consensus_8707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence
                              [ATCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTTTTAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATGTGCGCTTTTGTTGGGTTTATGAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGCCAATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCTGAATGGTGACGGATTCCGGT]

[+] EMBL AA999551             [ATCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTTTTAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATGTGCGCTTTTGTTGGGTTTATGAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGCCAATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCTGAATGGTGACGGATTCCGGT]


>consensus_8707#1 ATCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTT TTAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATGTGCGCTTTTGTTGGGTTTAT GAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGCCA ATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCTGA ATGGTGACGGATTCCGGT



consensusID : consensus_8707#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence
                              [TGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGTTCTGAAGTGCATAGGAAATCGGAATCCATCACCTAATAGGAAAAAAAACATATAGTGAAGTTTTCGTTTCTGTGAACTTTGCGTTATACTTCAGGTACTCGTTGAGTGCCCTC]

[-] EMBL CD089714             [TGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACAATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGTTCTGAAGTGCATAGGAAATCGGAATCCATCACCTAATAGGAAAAAAAACATATAGTGAAGTTTTCGTTTCTGTGAACTTTGCGTTATACTTCAGGTACTCGTTGAGTGCCCTC]


>consensus_8707#2 TGTTTGTTCAAAATCAACAAATGGTCTTGGTGGAATTGGAGGTAAATGTGAACTTTTACA ATCAGGAAAAAGAAACTCCAATTCTTGAGTAGTAGACTGAGGTTCTGAAGTGCATAGGAA ATCGGAATCCATCACCTAATAGGAAAAAAAACATATAGTGAAGTTTTCGTTTCTGTGAAC TTTGCGTTATACTTCAGGTACTCGTTGAGTGCCCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8707#0      AGTGATTGACTGGGATTTAACTGTTCAGATTTTAATTCCGATCGATTAAGAGTAGAATGT 60
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      -----------------------------------------------------------A 1
                                                                                  

consensus_8707#0      TTTGTTTGTTCAAAATCAACAAATGGTCTTGGTG-GAATTGGAGGTAAATGTGAACTTTT 119
consensus_8707#2      --TGTTTGTTCAAAATCAACAAATGGTCTTGGTG-GAATTGGAGGTAAATGTGAACTTTT 57
consensus_8707#1      TCTACGGAGGAGAATTCTCCACATTACCTAGACCTAAAANTCCCCTAAATATGTACTTTT 61
                        *         ** **  ** **   ** *     **       ***** ** ******

consensus_8707#0      -ACAATCAGGAAAAAGAAACTCCAAT-TCTTGAGTAGTAGACTGAGGCTCTGAAGTGCAT 177
consensus_8707#2      -ACAATCAGGAAAAAGAAACTCCAAT-TCTTGAGTAGTAGACTGAGGTTCTGAAGTGCAT 115
consensus_8707#1      TAGGGTTATCTAGTATTAATAGCAGGGTTTTGATTTATG---TGCGCTTTTGTTGGGTTT 118
                       *   * *   *  *  **   **   * **** *  *    ** *  * **  * *  *

consensus_8707#0      AGGAAATCG-GAATCCATCACA--TTTAGGGGATTTTTAGGTCTAGGTAATGTG----GA 230
consensus_8707#2      AGGAAATCG-GAATCCATCAC---CTAATAGGA-----AAAAAAACATATAGTG----AA 162
consensus_8707#1      ATGAACTGGTGAGTACAATACTGATCGATTGGTGATGCAAAACGATAGAATGTGTCCAGC 178
                      * *** * * ** * **  **      *  **      *     *   *  ***      

consensus_8707#0      GAATTC-TCTCCGTAGATGTTGTGCTTGAGATGTCTCGTCTTTATTAA-TACCTTCAGTT 288
consensus_8707#2      GTTTTCGTTTCTGTGAACTTTGCGTT--ATACTTCAGGTACTCGTTGAGTGCCCTC---- 216
consensus_8707#1      CAATGACTTTTCACGAAACTTAAACTACCTACTTGTCACATTCATTGACAACATTCAGCT 238
                         *   * *      *  **    *    *  *       *  ** *   *  **    

consensus_8707#0      TGTTCCCCAGATACTTTACGTATAGATTGGGGTTGATCGTATTTGCATTCCAATAATTTG 348
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      GAATGGTGACGGATTCCGGT---------------------------------------- 258
                                                                                  

consensus_8707#0      TTTAAATTTGAATTGGATACTTGTATGGAATCGTTTATATGATCATTTGAATGTGTAATG 408
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      TGTTTCGTCATCAGTGTAGGTAATAGATCTGCTTCGAAACTAGAATTAACTGTTGCACCT 468
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      TTACATGAGACATTAGATCCATGACGACTGTGGTTTTGATAGTGATGAGAATTTTTCGTA 528
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      TTATGAACGAAGCTTGACAGCTTTGACGGCGATCGGAATCCAAATCCACTATTCCAACCG 588
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      TCAAATGTTAACCCAGTATTGTTTGAATGACCTGCGCTTGTTGATGAACTATTTTGATTC 648
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      TTTAAAATATTACTGCTGTCTAAATTGCTATTATTGGGACTAGGGATGGTTGAGGAAGTT 708
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      GTTCCGTATATTTTCTGTGGTAAATATGACAAGGATGGTGTGGGTAATGTAGGAGGAGGT 768
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      TCTAAAATAAGCGAAGTTNTATAATTATCTTCTTCTAAAAACTTCTGTAACTCCTCTATA 828
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      TAGCGTTGAGCACATAGATATGCATTGAGTGTTTCATCCACAGCAAAGGAGTATTCAGAT 888
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      TGTTGAAAATATGCTATTTTATCAATAATCGAGTTGATTTTCGTGAACCATATGGCAGTT 948
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      GGCTTTCCATTTATACGTGGTTGAGCCACATTCGTATACGTTAAATCAGATAAATATAAA 1008
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      CCTAGATAAGGGATACCAGGAAGACTGATAGAATTCATATGTTCACGCTGTCTGCGACAA 1068
consensus_8707#2      ------------------------------------------------------------
consensus_8707#1      ------------------------------------------------------------
                                                                                  

consensus_8707#0      TTATCATTCTGACTAAAAAGCTCCTCCAAACGCCTGTACGCTGCACGA 1116
consensus_8707#2      ------------------------------------------------
consensus_8707#1      ------------------------------------------------
                                                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)