These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 823 fasta sequence [TCCGTGTAGTGACGATTGATTGAACGCAAGCCGAACTCAGACCACAGTAATTCCTTATTACTCAGGTCAGCTAACAAACGAGGGAGTCGTGGTGATGTAGGCGAAAGAACTTTCAAAAGAAATGGGAATAAATTTACATATCCAAACGAAGTGTCCACTAACTGCGGTGATGGGGTTTTCACAGCTACTCGTACCAATTTCATCTCATTAGAAACATGTGATCCCTTAGGTATATCAGGCATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCTGACCAATGAAGTTTATCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT-AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGCACGAGGGAAATCATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGGGTTGCGACCGCGCCAACGATATGACAGAGGGACTGGACCAATCTGAGTAGTATTGAACCACTGATACCAAACATGTAGCCTTGGAAGAATTAAAATAGACCAACGACGAAATTCATTAGCTTCAGTGACAGTTAGTCGAGGCAAACGATCTAACAAAGCCTCAACAGTCAAAATCAAAGATGGTGGATTGGCAACCTCGGAGGATTGAACAACAAATTCGGATGGAACCTTCG] [+] EMBL CD150599 [TCCGTGTAGTGACGATTGATTGAACGCAAGCCGAACTCAGACCACAGTAATTCCTTATTACTCAGGTCAGCTAACAAACGAGGGAGTCGTGGTGATGTAGGCGAAAGAACTTTCAAAAGAAATGGGAATAAATTTACATATCCAAACGAAGTGTCCACTAACTGCGGTGATGGGGTTTTCACAGCTACTCGTACCAATTTCATCTCATTAGAAACATGTGATCCCTTAGGTATATCAGGCATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCTGACCAATGAAGTTTATCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCATAAAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGC ] [-] EMBL CD064930 [ GGGGTTTTCACGGCTACTCGTGCCAATTTCATCTCATTAGAAACATGTGATCCCTTAGGTATATCAGGCATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCTGACCAATGAAGTTTATCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGCACGAGGGAAATCATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGGGTTGCGACCGCGCCAACGATATGACAGAGGGACTGGACCAATC ] [+] EMBL CD142621 [ tATTAGAAACATGTGATCCCTTAGGTATATCAGGCATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCTGACCAATGAAGTTTATCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGNGTGAGAGGCACGAGNGAAATCATC ] [+] EMBL CD130238 [ TCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGTACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGCACGAGGGAAATCATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGNGTTGCGACCGCGCCAACGATATG ] [-] EMBL CD112146 [ TCACTTTGGTCTGATAGGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGCACGAGGGAAATCATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGGGTTGCGACCGCGCCAACGATATGACAGAGGGACTGGACCAATCTGAGTAGTATTGAACCACTGATACCAAACATGTAGCCTTGGAAGAATTAAAATAGACCAACGACGAAATTCATTAGCTTCAGTGACAGTTAGTCGAGGCAAACGATCTAACAAAGCCTCAACAGTCAAAATCAAAGATGGTGGATTGGCAACCTCGGAGGATTGAACAACAAATTCGGATGGAACCTTCG] [-] EMBL CD071717 [ aAACGATATGACAGAGGGACTGGACCAATCTGAGTAGTA TGAACCACTGATACCAAACATGTAGCCTTGGAAGAATTAAAATAGACCAACGACGAAATTCATTAGCTTCAGCGACAGTTAGTCGAGGCAAACGATCTAACAAAGCCTCAACAGTCAAAATCAAAGATGGTGGATTGGCAACCTCGGAGGATTGAACAACAAATTCGGATGGAACCTTCG] consensusID : consensus_8708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [CTTAACTTTCCGCGTGGATTTTTATGGGATGAAGGATTTCATGGTTTGATATTGGCCCGATGGGATCCAAATCTTGCAATGGAAACAGTCGGTTCATGGCTCGATCTTATGAATGCTAATGGTTGGATTCCACGTGAACAGATTTTAGGCTGGGAGGCCAGATCGAAGGTTCCATCCGAATTTGTTGTTCAATCCTCCGAGGTTGCCAATCCACCATCTTTGATTTTGACTGTTGAGGTATGTTGTCAAGTTTTTAAACTTTTTAGTAGATCCATGAACATATTTCCATTTGCATCACGGTATATTTTATCACACGTAATTTGTATCACTAATAGTTGAAGCGAATATGCAGTTGTGTCATAG] [+] EMBL CD117902 [CTTAACTTTCCGCGTGGATTTTTATGGGATGAAGGATTTCATGGTTTGATATTGGCCCGATGGGATCCAAATCTTGCAATGGAAACAGTCGGTTCATGGCTCGATCTTATGAATGCTAATGGTTGGATTCCACGTGAACAGATTTTAGGCTGGGAGGCCAGATCGAAGGTTCCATCCGAATTTGTTGTTCAATCCTCCGAGGTTGCCAATCCACCATCTTTGATTTTGACTGTTGAGGTATGTTGTCAAGTTTTTAAACTTTTTAGTAGATCCATGAACATATTTCCATTTGCATCACGGTATATTTTATCACACGTAATTTGTATCACTAATAGTTGAAGCGAATATGCAGTTGTGTCATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8708#0 TCCGTGTAGTGACGATTGATTGAACGCAAGCCGAACTCAGACCACAGTAATTCCTTATTA 60 consensus_8708#1 ------------------------------------------------------------ consensus_8708#0 CTCAGGTCAGCTAACAAACGAGGGAGTCGTGGTGATGTAGGCGAAAGAACTTTCAAAAGA 120 consensus_8708#1 ------------------------------------------------------------ consensus_8708#0 AATGGGAATAAATTTACATATCCAAACGAAGTGTCCACTAACTGCGGTGATGGGGTTTTC 180 consensus_8708#1 -----------------------------------------------------------C 1 * consensus_8708#0 ACAGCTACTCGTACCAATTTCATCTCATTAGAAACATGTGATCCCTTAGGTATATCAGGC 240 consensus_8708#1 TTAACTTTCCGCGTGGATTTT-TATGGGATGAAGGATTTCATGGTTTG---ATATTGG-- 55 * ** ** **** * * *** ** * ** ** **** * consensus_8708#0 ATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCT 300 consensus_8708#1 --CCCGATGGGATCCAAATCT-TGCAATGGAAACAGTCGGT-TCATGGCTC-GATCTTAT 110 * * * * * ** *** ** * * * ** * * **** * * * ** * consensus_8708#0 GACCAATGAAGTTT--ATCCAGTTCACTTTGGTCTGA---TAAGAGATCAGCCCAACGGG 355 consensus_8708#1 GAATGCTAATGGTTGGATTCCACGTGAACAGATTTTAGGCTGGGAGGCCAGATCGAAGGT 170 ** * * * ** ** * * * * * * *** *** * * ** consensus_8708#0 TATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGAT 415 consensus_8708#1 TCCATCCGA-ATTTGTTGTTCAATCCTCCGAGGTTGCCAATCCACCATCTTTGATTTTGA 229 * ** * * * * ** * * *** *** ** ** * *** consensus_8708#0 CTGTCTGCATAAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAG 475 consensus_8708#1 CTGTTGAGGTATGTTGT-CAAGTTTTTAAACTT-TTTAGTAGATCCATGAACATATTTCC 287 **** ** **** ** *** * *** * * ** ** * * consensus_8708#0 TCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGT-TGGGTGAGAGGCACGAGGG 534 consensus_8708#1 ATTTGCATCACGGTATAT---TTTATCACACGTAATTTGTATCACTAATAGTTGAAGCGA 344 * ** ** *** ** * * * * * ** ** * * * ** * consensus_8708#0 AAAT-CATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGGGTT 593 consensus_8708#1 ATATGCAGTTGTGTCATAG----------------------------------------- 363 * ** ** * ** * consensus_8708#0 GCGACCGCGCCAACGATATGACAGAGGGACTGGACCAATCTGAGTAGTATTGAACCACTG 653 consensus_8708#1 ------------------------------------------------------------ consensus_8708#0 ATACCAAACATGTAGCCTTGGAAGAATTAAAATAGACCAACGACGAAATTCATTAGCTTC 713 consensus_8708#1 ------------------------------------------------------------ consensus_8708#0 AGTGACAGTTAGTCGAGGCAAACGATCTAACAAAGCCTCAACAGTCAAAATCAAAGATGG 773 consensus_8708#1 ------------------------------------------------------------ consensus_8708#0 TGGATTGGCAACCTCGGAGGATTGAACAACAAATTCGGATGGAACCTTCG 823 consensus_8708#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||