cluster # 8710

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Schistosoma mansoni
cluster # 8710 cluster # 8710 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8710#0 length = 463 sequences # 5

consensus_8710#1 length = 390 sequences # 1
consensus_8710#2 length = 310 sequences # 1

consensusID : consensus_8710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 463
fasta sequence

                              [ATCACCAAAATCGTCAATTATCATCTGACAGGCTACACAGAAACAGTTCCGTTTCTACAATCCATTATTTTGGTCATCAATTGACGTGATGTCGATGTCCAACGGAGATTATGTTCGGATACCACTTTCTGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACATAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGACGCCATCGGGGGGAATATATCCAACTATTTGCAGTCGCGTGGTGAGGTGTCTTCATGGCATTAT]

[-] EMBL CD120880             [ATCACCAAAATCGTCAATTATCATCTGACAGGCTACACAGAAACAGTTCCGTTTCTACAATCCATTATTTTGGTCATCAATTGACGTGATGTCGATGTCCAACGGAGATTATGTTCGGATACCACTTTCCGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACATAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCG                                                                                                                                                                                                              ]
[-] EMBL CD158620             [                                                                                                                             TTTCTGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACATAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGCACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTAC                                                                               ]
[-] EMBL CD158749             [                                                                                                                             TTTCTGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACATAAGACTGACAGTGAAGGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCGACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTAC                                                                               ]
[+] EMBL CD128454             [                                                                                                                                                                                   ATAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAAACCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGAC                                                               ]
[-] EMBL CD065536             [                                                                                                                                                                                        ACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCATCGGGGGGAATATATCCAACTATTTGCAGTCGCGTGGTGAGGTGTCTTCATGGCATTAT]




>consensus_8710#0
ATCACCAAAATCGTCAATTATCATCTGACAGGCTACACAGAAACAGTTCCGTTTCTACAA
TCCATTATTTTGGTCATCAATTGACGTGATGTCGATGTCCAACGGAGATTATGTTCGGAT
ACCACTTTCTGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACA
TAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTT
CTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATT
CATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTA
TGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGACGCCATCGGGGGGAATATATC
CAACTATTTGCAGTCGCGTGGTGAGGTGTCTTCATGGCATTAT

consensusID : consensus_8710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [GAATGTGTCATGACTCAATTGCCTTTCTCCCTATTTTTTACTTGCCCGCATAATGCTGAGGAGTATGATATATTTCCTGTAACGCTTTAGTCTTTTGTGTTCAGGCAAGCTATCAAGTCATTATTTGAGGGTGAAAATAATCATTTTTATCCTTATTTTAACACTGCATACGAGTGAAATTTTGTCACTGAGACCTTTATCGTGGCCACTTACGTAATTATGTAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCTCGGGGGGAATATATCCAACTATTGCATCGCGAAGT]

[-] EMBL CD090609             [GAATGTGTCATGACTCAATTGCCTTTCTCCCTATTTTTTACTTGCCCGCATAATGCTGAGGAGTATGATATATTTCCTGTAACGCTTTAGTCTTTTGTGTTCAGGCAAGCTATCAAGTCATTATTTGAGGGTGAAAATAATCATTTTTATCCTTATTTTAACACTGCATACGAGTGAAATTTTGTCACTGAGACCTTTATCGTGGCCACTTACGTAATTATGTAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCTCGGGGGGAATATATCCAACTATTGCATCGCGAAGT]




>consensus_8710#1
GAATGTGTCATGACTCAATTGCCTTTCTCCCTATTTTTTACTTGCCCGCATAATGCTGAG
GAGTATGATATATTTCCTGTAACGCTTTAGTCTTTTGTGTTCAGGCAAGCTATCAAGTCA
TTATTTGAGGGTGAAAATAATCATTTTTATCCTTATTTTAACACTGCATACGAGTGAAAT
TTTGTCACTGAGACCTTTATCGTGGCCACTTACGTAATTATGTAGGTTCTGCATCGCCTT
GCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGA
GCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCTCGGGG
GGAATATATCCAACTATTGCATCGCGAAGT

consensusID : consensus_8710#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [AAGAAGTAAGTTTTACACAAGTTTGTTTTAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAGATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCATCGGGGGGAATATATCCAACTATTTGCAGTCACGTGGTGAGGTGTCTTCATGGCATTAT]

[-] EMBL CD167347             [AAGAAGTAAGTTTTACACAAGTTTGTTTTAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAGATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCATCGGGGGGAATATATCCAACTATTTGCAGTCACGTGGTGAGGTGTCTTCATGGCATTAT]




>consensus_8710#2
AAGAAGTAAGTTTTACACAAGTTTGTTTTAGACTGACAGTGAAAGTCCAAAAACGGAATC
CAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCA
GGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAGATTTCATTCAACA
TTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTT
AGCTGCCGCCATCGGGGGGAATATATCCAACTATTTGCAGTCACGTGGTGAGGTGTCTTC
ATGGCATTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8710#0      ATCACCAAAATCGTCAATTATCATCTGACAGGCTACACAGAAACAGTTCCGTTTCTACAA 60
consensus_8710#2      ------------------------------------------------------------
consensus_8710#1      ---------------------------------------GAATGTGTCATGACTCAATTG 21
                                                                                  

consensus_8710#0      TCCATTATTTTGGTCATCAATTGACGTGATGTCGATGTCCAACGGAGATTATGTTCGGAT 120
consensus_8710#2      ------------------------------------------------------------
consensus_8710#1      CCTTTCTCCCTATTTTTTACTTGCCCGCATAATGCTGAGGAGTATGATATATTTCCTGTA 81
                                                                                  

consensus_8710#0      ACCACTTTCTGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACA 180
consensus_8710#2      ----------------------------AAGAAGTAAG--TTTTACACAAGTTTG---TT 27
consensus_8710#1      ACG--CTTTAGTCTTTTGTGTTCAGGCAAGCTATCAAGT-CATTATTTGAGGGTG-AAAA 137
                                                      *  ***    * *    *   *      

consensus_8710#0      TAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTT 240
consensus_8710#2      TTAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTT 87
consensus_8710#1      TAATCATTTTTATCCTTATTTTAACACTGCATACGAGTGAAATTTTGTCAC-TGAGACCT 196
                      * *   *     *     *   ** ** * ** * *      *  * **** *   *  *

consensus_8710#0      CTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATT 300
consensus_8710#2      CTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATT 147
consensus_8710#1      TTATCGTGGCCACTTACGTAATTATGTA-----GGTTCTGCATCGCCTTGCCTCTGCATT 251
                       ** *      ****   *  * **  *     ***************************

consensus_8710#0      CATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTA 360
consensus_8710#2      CATACCTAATCCGCGTATAGATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTA 207
consensus_8710#1      CATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTA 311
                      ******************* ****************************************

consensus_8710#0      TGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGACGCCATCGGGGGGAATATATC 420
consensus_8710#2      TGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCATCGGGGGGAATATATC 267
consensus_8710#1      TGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCC-TCGGGGGGAATATATC 370
                      ************************************** **** ****************

consensus_8710#0      CAACTATTTGCAGTCGCGTGGTGAGGTGTCTTCATGGCATTAT 463
consensus_8710#2      CAACTATTTGCAGTCACGTGGTGAGGTGTCTTCATGGCATTAT 310
consensus_8710#1      CAACTATT-GCA-TCGCGAAGT--------------------- 390
                      ******** *** ** **  **