These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 463 fasta sequence [ATCACCAAAATCGTCAATTATCATCTGACAGGCTACACAGAAACAGTTCCGTTTCTACAATCCATTATTTTGGTCATCAATTGACGTGATGTCGATGTCCAACGGAGATTATGTTCGGATACCACTTTCTGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACATAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGACGCCATCGGGGGGAATATATCCAACTATTTGCAGTCGCGTGGTGAGGTGTCTTCATGGCATTAT] [-] EMBL CD120880 [ATCACCAAAATCGTCAATTATCATCTGACAGGCTACACAGAAACAGTTCCGTTTCTACAATCCATTATTTTGGTCATCAATTGACGTGATGTCGATGTCCAACGGAGATTATGTTCGGATACCACTTTCCGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACATAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCG ] [-] EMBL CD158620 [ TTTCTGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACATAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGCACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTAC ] [-] EMBL CD158749 [ TTTCTGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACATAAGACTGACAGTGAAGGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCGACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTAC ] [+] EMBL CD128454 [ ATAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAAACCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGAC ] [-] EMBL CD065536 [ ACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCATCGGGGGGAATATATCCAACTATTTGCAGTCGCGTGGTGAGGTGTCTTCATGGCATTAT] consensusID : consensus_8710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [GAATGTGTCATGACTCAATTGCCTTTCTCCCTATTTTTTACTTGCCCGCATAATGCTGAGGAGTATGATATATTTCCTGTAACGCTTTAGTCTTTTGTGTTCAGGCAAGCTATCAAGTCATTATTTGAGGGTGAAAATAATCATTTTTATCCTTATTTTAACACTGCATACGAGTGAAATTTTGTCACTGAGACCTTTATCGTGGCCACTTACGTAATTATGTAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCTCGGGGGGAATATATCCAACTATTGCATCGCGAAGT] [-] EMBL CD090609 [GAATGTGTCATGACTCAATTGCCTTTCTCCCTATTTTTTACTTGCCCGCATAATGCTGAGGAGTATGATATATTTCCTGTAACGCTTTAGTCTTTTGTGTTCAGGCAAGCTATCAAGTCATTATTTGAGGGTGAAAATAATCATTTTTATCCTTATTTTAACACTGCATACGAGTGAAATTTTGTCACTGAGACCTTTATCGTGGCCACTTACGTAATTATGTAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCTCGGGGGGAATATATCCAACTATTGCATCGCGAAGT] consensusID : consensus_8710#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [AAGAAGTAAGTTTTACACAAGTTTGTTTTAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAGATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCATCGGGGGGAATATATCCAACTATTTGCAGTCACGTGGTGAGGTGTCTTCATGGCATTAT] [-] EMBL CD167347 [AAGAAGTAAGTTTTACACAAGTTTGTTTTAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTTCTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATTCATACCTAATCCGCGTATAGATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTATGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCATCGGGGGGAATATATCCAACTATTTGCAGTCACGTGGTGAGGTGTCTTCATGGCATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8710#0 ATCACCAAAATCGTCAATTATCATCTGACAGGCTACACAGAAACAGTTCCGTTTCTACAA 60 consensus_8710#2 ------------------------------------------------------------ consensus_8710#1 ---------------------------------------GAATGTGTCATGACTCAATTG 21 consensus_8710#0 TCCATTATTTTGGTCATCAATTGACGTGATGTCGATGTCCAACGGAGATTATGTTCGGAT 120 consensus_8710#2 ------------------------------------------------------------ consensus_8710#1 CCTTTCTCCCTATTTTTTACTTGCCCGCATAATGCTGAGGAGTATGATATATTTCCTGTA 81 consensus_8710#0 ACCACTTTCTGGGAGTTTTGAGGACCAAGGGGACCAAGAACTTCACGGGACTTTAGAACA 180 consensus_8710#2 ----------------------------AAGAAGTAAG--TTTTACACAAGTTTG---TT 27 consensus_8710#1 ACG--CTTTAGTCTTTTGTGTTCAGGCAAGCTATCAAGT-CATTATTTGAGGGTG-AAAA 137 * *** * * * * consensus_8710#0 TAAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTT 240 consensus_8710#2 TTAGACTGACAGTGAAAGTCCAAAAACGGAATCCAATGTGGGTCCTCTCACCTTTAAGTT 87 consensus_8710#1 TAATCATTTTTATCCTTATTTTAACACTGCATACGAGTGAAATTTTGTCAC-TGAGACCT 196 * * * * * ** ** * ** * * * * **** * * * consensus_8710#0 CTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATT 300 consensus_8710#2 CTACCAACAGTACTTCGATGTTGATACAAGTCAGGTTCTGCATCGCCTTGCCTCTGCATT 147 consensus_8710#1 TTATCGTGGCCACTTACGTAATTATGTA-----GGTTCTGCATCGCCTTGCCTCTGCATT 251 ** * **** * * ** * *************************** consensus_8710#0 CATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTA 360 consensus_8710#2 CATACCTAATCCGCGTATAGATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTA 207 consensus_8710#1 CATACCTAATCCGCGTATAAATTTCATTCAACATTCTCTAAAACCCCGAGCTGATCTCTA 311 ******************* **************************************** consensus_8710#0 TGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGACGCCATCGGGGGGAATATATC 420 consensus_8710#2 TGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCCATCGGGGGGAATATATC 267 consensus_8710#1 TGGTCCATTTTGGATTTCAACTACATTGATGTTAGCTGCCGCC-TCGGGGGGAATATATC 370 ************************************** **** **************** consensus_8710#0 CAACTATTTGCAGTCGCGTGGTGAGGTGTCTTCATGGCATTAT 463 consensus_8710#2 CAACTATTTGCAGTCACGTGGTGAGGTGTCTTCATGGCATTAT 310 consensus_8710#1 CAACTATT-GCA-TCGCGAAGT--------------------- 390 ******** *** ** ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||