cluster # 8712

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Schistosoma mansoni
cluster # 8712 cluster # 8712 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8712#0 length = 594 sequences # 3
consensus_8712#1 length = 460 sequences # 1

consensus_8712#2 length = 451 sequences # 1
consensus_8712#3 length = 360 sequences # 2

consensusID : consensus_8712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 594
fasta sequence

                              [TCTTTCCAAAATAAAGGTGATAGCTTAAAACGTACATTCAAGATAACTCATCTGATACTTCCGAATGGGAAGATATCTGTGTATTATGATAACATGACTCAAGAATTCGGACTACAATTCCAATCGCGATTAAGCGGTTCATTAGCGTGTGAACGAGGTGAGAGAAAGTTACATACATTTGTTGTTAAAAAATGGATCAAAAGTGGAACGTTAGTGGAGTACGAAGTTTCTGGTGATTGTCCAAAACACGATTCGATGGAGATATGTCAAGAATCAAAGACATCGAATACAAAGTGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCAATCGTTGTGGAAGA-AGCTACAACAACTC-CAAGGATAAGTGAATCTNACAACGGACACGGGAAATCAAATCATTACCTACACATTGTCATACCTGTAG-TATCTGTTTCTCGGGTGTGTGCAGTGGCTGTGTCATATGCCTATGGTTGTACAGGAAAAAGAAATGTATGCCACCGCTTTCAT]

[+] EMBL CD165429             [TCTTTCCAAAATAAAGGTGATAGCTTAAAACGTACATTCAAGATAACTCATCTGATACTTCCGAATGGGAAGATATCTGTGTATTATGATAACATGACTCAAGAATTCGGACTACAATTCCAATCGCGATTAAGCGGTTCATTAGCGTGTGAACGAGGTGAGAGAAAGTTACATACATTTGTTGTTAAAAAATGGATCAAAAGTGGAACGTTAGTGGAGTACGAAGTTTCTGGTGATTGTCCAAAACACGATTCGATGGAGATATGTCAAGAATCAAAGACATCGAATACAAAGTGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATACTGATGACTTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCA                                                                                                                                                                                       ]
[+] EMBL AI764883             [                                                                                                                                                                                                                                                                                                  AAAGTGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCAATCGTTGTGGAAGA AGCTACAACAACTC CAAGGATAAGTGAATCTNACAACGGACACGGGAAATCAAATCATTACCTACACATTGTCATACCTGTAG TATCTGTTTCTCGGGTGTGTGCAGTGGCTGTGTCATATGCCTATGGTTGTACAGGAAAAAGAAATGTATGCCACCGCTTTCAT]
[+] EMBL AW587523             [                                                                                                                                                                                                                                                                                                  AAAGTGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCAATCGTTGTGGAAGACGGCTTCAACAACTCYGAAGGATAAGTGAATCTGACAACGGACACGGGAAATCAAATCATTACCGTCCCATTGTCATACCTGTAGTTATCTGTTTCTCGGTTGTGTGCAGTGGCTGTGTCATATGCCTCTGGTTGTCCAGGAGAAAG                      ]




>consensus_8712#0
TCTTTCCAAAATAAAGGTGATAGCTTAAAACGTACATTCAAGATAACTCATCTGATACTT
CCGAATGGGAAGATATCTGTGTATTATGATAACATGACTCAAGAATTCGGACTACAATTC
CAATCGCGATTAAGCGGTTCATTAGCGTGTGAACGAGGTGAGAGAAAGTTACATACATTT
GTTGTTAAAAAATGGATCAAAAGTGGAACGTTAGTGGAGTACGAAGTTTCTGGTGATTGT
CCAAAACACGATTCGATGGAGATATGTCAAGAATCAAAGACATCGAATACAAAGTGCATG
TGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATATTGATGACTTCAAA
GTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCAATCGTT
GTGGAAGAAGCTACAACAACTCCAAGGATAAGTGAATCTNACAACGGACACGGGAAATCA
AATCATTACCTACACATTGTCATACCTGTAGTATCTGTTTCTCGGGTGTGTGCAGTGGCT
GTGTCATATGCCTATGGTTGTACAGGAAAAAGAAATGTATGCCACCGCTTTCAT

consensusID : consensus_8712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [GAAGAACATCGATTACAATCGCATTTATACAGTTCATTAGCGTGTGAAGGAGATCAAAAAGGCGTTGACATATTTGTTGGTAAAATTTGGATCAAAAGTGGAACTTTAGTGGAGTATGAAGTTTCCGGTGTATATAGTTGCCAGATTGAAATAGCTCGAATGTCAATGTTTCGACCACATCAATCCTTGTGGAAGAAGCTGGAACAACTCCAGGGATAAATGAATCTGAGTTAAGAAATGAATTGGAGAGTACTGATCAACAATCTGAATCCCATTTGAATATGACGACAGAAACGACTGGAGACAATGGACATAGGAAGTCATATAATTCCTTACACATTGTCATACCTGTAGTTATCTGTTTCTTGGTTGTGTGCGGTGGCTGTGTCATAGGCCTATGGTTGTACAGGAAAAACAAATGTATGCAATGGCTTTCATAAACGACTTATCGCTTGTTTTC]

[+] EMBL CD152818             [GAAGAACATCGATTACAATCGCATTTATACAGTTCATTAGCGTGTGAAGGAGATCAAAAAGGCGTTGACATATTTGTTGGTAAAATTTGGATCAAAAGTGGAACTTTAGTGGAGTATGAAGTTTCCGGTGTATATAGTTGCCAGATTGAAATAGCTCGAATGTCAATGTTTCGACCACATCAATCCTTGTGGAAGAAGCTGGAACAACTCCAGGGATAAATGAATCTGAGTTAAGAAATGAATTGGAGAGTACTGATCAACAATCTGAATCCCATTTGAATATGACGACAGAAACGACTGGAGACAATGGACATAGGAAGTCATATAATTCCTTACACATTGTCATACCTGTAGTTATCTGTTTCTTGGTTGTGTGCGGTGGCTGTGTCATAGGCCTATGGTTGTACAGGAAAAACAAATGTATGCAATGGCTTTCATAAACGACTTATCGCTTGTTTTC]




>consensus_8712#1
GAAGAACATCGATTACAATCGCATTTATACAGTTCATTAGCGTGTGAAGGAGATCAAAAA
GGCGTTGACATATTTGTTGGTAAAATTTGGATCAAAAGTGGAACTTTAGTGGAGTATGAA
GTTTCCGGTGTATATAGTTGCCAGATTGAAATAGCTCGAATGTCAATGTTTCGACCACAT
CAATCCTTGTGGAAGAAGCTGGAACAACTCCAGGGATAAATGAATCTGAGTTAAGAAATG
AATTGGAGAGTACTGATCAACAATCTGAATCCCATTTGAATATGACGACAGAAACGACTG
GAGACAATGGACATAGGAAGTCATATAATTCCTTACACATTGTCATACCTGTAGTTATCT
GTTTCTTGGTTGTGTGCGGTGGCTGTGTCATAGGCCTATGGTTGTACAGGAAAAACAAAT
GTATGCAATGGCTTTCATAAACGACTTATCGCTTGTTTTC

consensusID : consensus_8712#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TGGGGTGGCCCGTGGCTTTGGAATCGCTATTAAGCGGTTCAATAGAGTGCGATGGAGAAGGGTGAGCGGGACTTTGAAATATCTGTTGATGCAAAATGGATCAAAAGTGGAACGTTAGTGGAGTATAAAGTTTCCGGTGATTGTCCAAAATACAATACGACTAAAACATGTCAAGACTCCAAAACACTGAATACAAAGTGCACTTGGCATGAAAAAGCAAATATGTGCATCGTCAGCACTGATATGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGAAAATAGCTCGAATGTTAACGTTTCGACCACACCAATCGTTGTGGAACAAGCTACAACAACTCAAAGGACAAGTGAATCTGAGTTAAGAAATGAATTGGAGAGAACTGATCAACAATCTGAATCTCATTTGAATAGCTCGAATGTTAACGTTTCAACCACACCAATCG]

[-] EMBL CD165766             [TGGGGTGGCCCGTGGCTTTGGAATCGCTATTAAGCGGTTCAATAGAGTGCGATGGAGAAGGGTGAGCGGGACTTTGAAATATCTGTTGATGCAAAATGGATCAAAAGTGGAACGTTAGTGGAGTATAAAGTTTCCGGTGATTGTCCAAAATACAATACGACTAAAACATGTCAAGACTCCAAAACACTGAATACAAAGTGCACTTGGCATGAAAAAGCAAATATGTGCATCGTCAGCACTGATATGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGAAAATAGCTCGAATGTTAACGTTTCGACCACACCAATCGTTGTGGAACAAGCTACAACAACTCAAAGGACAAGTGAATCTGAGTTAAGAAATGAATTGGAGAGAACTGATCAACAATCTGAATCTCATTTGAATAGCTCGAATGTTAACGTTTCAACCACACCAATCG]




>consensus_8712#2
TGGGGTGGCCCGTGGCTTTGGAATCGCTATTAAGCGGTTCAATAGAGTGCGATGGAGAAG
GGTGAGCGGGACTTTGAAATATCTGTTGATGCAAAATGGATCAAAAGTGGAACGTTAGTG
GAGTATAAAGTTTCCGGTGATTGTCCAAAATACAATACGACTAAAACATGTCAAGACTCC
AAAACACTGAATACAAAGTGCACTTGGCATGAAAAAGCAAATATGTGCATCGTCAGCACT
GATATGGATATTGATGACTTCAAAGTAAATAGTTGCCAGATTGAAAATAGCTCGAATGTT
AACGTTTCGACCACACCAATCGTTGTGGAACAAGCTACAACAACTCAAAGGACAAGTGAA
TCTGAGTTAAGAAATGAATTGGAGAGAACTGATCAACAATCTGAATCTCATTTGAATAGC
TCGAATGTTAACGTTTCAACCACACCAATCG

consensusID : consensus_8712#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 360
fasta sequence

                              [ATGGTTACATGTTTTGTTATCCACTTATCTTTTGTTTGATAATTTGAAATGCAATCAACTTATTCCTTTCACTGAAGATTGTCCAAAACACAAAACGGCTGAAAAATGTCAAGACTCCAAAACACCGAATAGAAAGTGCATGTGGTATGAAAAAGCAAATATGTGCGTCGTCAGTACTGATAAGGATATTGATGACTCCAAAGTAAGTAGTTGCCAGATTGGAGTAAGTAATTGGTAGACATAACAGGTTGTTTTTAATATTACCACAATCCATATTCTAAATCTATTTACTAGAGAGAACATTTTATTGCTACGAATAAGTAGTGATTTGTATAGTTCCCTTAGTTCATAAATCAATGT]

[+] EMBL CD117874             [ATGGTTACATGTTTTGTTATCCACTTATCTTTTGTTTGATAATTTGAAATGCAATCAACTTATTCCTTTCACTGAAGATTGTCCAAAACACAAAACGGCTGAAAAATGTCAAGACTCCAAAACACCGAATAGAAAGTGCATGTGGTATGAAAAAGCAAATATGTGCGTCGTCAGTACTGATAAGGATATTGATGACTCCAAAGTAAGTAGTTGCCAGATTGGAGTAAGTAATTGGTAGACATAACAGGTTGTTTTTAATATTACCACAATCCATATTCTAAATCTATTTACTAGAGAGAACATTTTATTGCTACGAATAAGTAGTGATTTGTATAGTTCCCTTAGTTCATAAATCAATGT]
[+] EMBL CD118116             [ATGGTTACATGTTTTGTTATTCACTTATCTTTTGTTTGATAATTTGAAATGCAATCAACTTATTCCTTTCACTGAAGATTGTCCAAAACACAAAACGGCTGAAAAATGTCAAGACTCCAAAACACCGAATAGAAAGTGCATGTG                                                                                                                                                                                                                        ]




>consensus_8712#3
ATGGTTACATGTTTTGTTATCCACTTATCTTTTGTTTGATAATTTGAAATGCAATCAACT
TATTCCTTTCACTGAAGATTGTCCAAAACACAAAACGGCTGAAAAATGTCAAGACTCCAA
AACACCGAATAGAAAGTGCATGTGGTATGAAAAAGCAAATATGTGCGTCGTCAGTACTGA
TAAGGATATTGATGACTCCAAAGTAAGTAGTTGCCAGATTGGAGTAAGTAATTGGTAGAC
ATAACAGGTTGTTTTTAATATTACCACAATCCATATTCTAAATCTATTTACTAGAGAGAA
CATTTTATTGCTACGAATAAGTAGTGATTTGTATAGTTCCCTTAGTTCATAAATCAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8712#2      ------------------------------------------------------------
consensus_8712#3      ------------------------------------------------------------
consensus_8712#0      TCTTTCCAAAATAAAGGTGATAGCTTAAAACGTACATTCAAGATAACTCATCTGATACTT 60
consensus_8712#1      ------------------------------------------------------------
                                                                                  

consensus_8712#2      ----------------------------------------TGGGGTGGCCCGTGGCTTTG 20
consensus_8712#3      ------------------------------------------------------------
consensus_8712#0      CCGAATGGGAAGATATCTGTGTATTATGATAACATGACTCAAGAATTCGGACTACAATTC 120
consensus_8712#1      ------------------------------------------GAA---GAACATCGATTA 15
                                                                                  

consensus_8712#2      GAATCGCTATTAAGCGGTTCAATAGAGTGCGATGGAGAAGGGTGAGCGGGACTTTGAAAT 80
consensus_8712#3      -----------------------------------------ATG-GTTACATGTTTTGTT 18
consensus_8712#0      CAATCGCGATTAAGCGGTTCATTAGCGTGTGAACGAG----GTGAGAGAAAGTTACATAC 176
consensus_8712#1      CAATCGCATTTATACAGTTCATTAGCGTGTGAAGGAG----ATCAAAAAGGCGTTGACAT 71
                                                                *          *      

consensus_8712#2      ATCTGTTGATGCAAAATGGATCAAAAGTGGAACGTTAGTGGAGTATAAAGTTT-CCGGTG 139
consensus_8712#3      ATCCACTTATCTTTTGTTTGATAATT-TGAAATGCAATCAACTTATTCCTTTCACTGAAG 77
consensus_8712#0      ATTTGTTGTTAAAAAATGGATCAAAAGTGGAACGTTAGTGGAGTACGAAGTTT-CTGGTG 235
consensus_8712#1      ATTTGTTGGTAAAATTTGGATCAAAAGTGGAACTTTAGTGGAGTATGAAGTTT-CCGGTG 130
                      **    *  *      *     **   ** **    *      **     **  * *  *

consensus_8712#2      ATTGTCCAAAATACAATACGACTAAAACATGTCAAGACTCCAAAACACTGAATACAA-AG 198
consensus_8712#3      ATTGTCCAAAACACAAAACGGCTGAAAAATGTCAAGACTCCAAAACACCGAATAGAA-AG 136
consensus_8712#0      ATTGTCCAAAACACGATTCGATGGAGATATGTCAAGAATCAAAGACATCGAATACAA-AG 294
consensus_8712#1      TATAT---AGTTGCCA---GATTGAAATAGCTCGAATGTCAATG-TTTCGACCACATCAA 183
                        * *   *    * *   *    * * *  ** *   ** *       **  * *  * 

consensus_8712#2      TGCACTTGGCATGAAAAAGCAAATATGTGCATCGTCAGCACTGATATGGATATTGATGAC 258
consensus_8712#3      TGCATGTGGTATGAAAAAGCAAATATGTGCGTCGTCAGTACTGATAAGGATATTGATGAC 196
consensus_8712#0      TGCATGTGGTATGAAAAAGCAAATATGTGCATCGTCAGCACTGATAAGGATATTGATGAC 354
consensus_8712#1      TCCTTGTG----GAAGAAGCTGG-------------AACAACTCCAGGGATA--AATGAA 224
                      * *   **    *** ****                *  *     * *****   **** 

consensus_8712#2      TTCAAAGTAAATAGTTGCCAGATTGAAAATAGCTCGAATGTTAACGTTTCGACCACACCA 318
consensus_8712#3      TCCAAAGTAAGTAGTTGCCAGATTGGAGTAAG---------TAATTGGTAGACATAACAG 247
consensus_8712#0      TTCAAAGTAAATAGTTGCCAGATTGGAAATAGCTCGAATGTCCACGTTTCGATCACACCA 414
consensus_8712#1      TCTGAGTTAAGAAAT----GAATTGGAGAGTACTGA------------TCAACAATCTGA 268
                      *   *  ***  * *      **** *                     *  *        

consensus_8712#2      ATCGTTGTGGAACAAGCTACAACAACTCAAAGGACAAGTGAATCTGAGTTAAGA----AA 374
consensus_8712#3      GTTGTTTTTAAT---ATTACCACAATCCATATTCTAAATCTATTT-ACTAGAGA----GA 299
consensus_8712#0      ATCGTTGTGGAAGAAGCTACAACAACTCCAAGGATAAGTGAATCTNACAACGGACACGGG 474
consensus_8712#1      ATCCCATTTGAA-----TATGACGAC---AGAAACGACTGGA---GACAATGGACATAGG 317
                       *     *  *      **  ** *           * *  *    *     **      

consensus_8712#2      TGAATTGGAGAGAACTGATCAACAATC-TGAATCTCATTTGAATAGCTCGAATGTTAACG 433
consensus_8712#3      ACATTTTATTGCTACGAATAAGTAGTGATTTGTATAGTTCCCTTAGTTCATAAATCAATG 359
consensus_8712#0      AAATCAAATCATTACCTACACATTGTCATACCTGTAGT--ATCTGTTTCTCGGGTGTGTG 532
consensus_8712#1      AAGTCATATAATTCCTTACACATTGTCATACCTGTAGTT-ATCTGTTTCTTGGTTGTGTG 376
                                    *  *       *  *   * *  *     *   **     *    *

consensus_8712#2      TTTCAACCACACCAATCG------------------------------------------ 451
consensus_8712#3      T----------------------------------------------------------- 360
consensus_8712#0      CAGTGGCTGTGTCATATGCCTATGGTTGTACAGGAAAAAGAAATGTATGCCACCGCTTTC 592
consensus_8712#1      CGGTGGCTGTGTCATAGGCCTATGGTTGTACAGGAAAAACAAATGTATGCAATGGCTTTC 436
                                                                                  

consensus_8712#2      ------------------------
consensus_8712#3      ------------------------
consensus_8712#0      AT---------------------- 594
consensus_8712#1      ATAAACGACTTATCGCTTGTTTTC 460