These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1568 fasta sequence [TGTTGTCGGATCCTCGTCGAACCGATAGTTAGTCATTGTGGTCTGACGTCACTATTGCGTGGAATCTAAGTGCGGTGATAGTTCAGTAATTTAGTTTTCGGGAGTGAAAGTGCACTTGACCAGACGTAAATTTTGTCGAAGTACGAGTTAGGTGCTTAACTTTTAAGATGATCTGCTGCGAAATTCTTCCTCTTTACTTAAGTTTATAAGTGAGAAAAACCTCTTACGACTTCCTCAGATATAGTGATGACCATTCGGACTAAGAAAGTGGTTCAAGACTTAAAAATGTATTTCAACTCATCAGACTACTGACGAATCCTAGGTCTCGAGAACAGAGCTTTAAGACTATCAGATCCGTACTTTATTTTGTGCAACAGGATAGATAATGAACTCGCATGTGTTTGTACTAACTAGTGAACTGTCAATGAATTAATTTCCTAGTAATGAAGACGTTATTCTAATAGAGCAATTGGAAATGTGCCTGACTTTTGGGAAATATGTGACAAAAGAGCTATTAAGGTAGACTTCAACTACATTTTAGTAGTTAAACGTGCTGAGGTCAATTTTCATAGTACATTTTCAGAATTAGCCACTCTAAGAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGTGATATTGATTTATTAAATTCTGAAGTCTTCTACACCGTAATCGACTCAGAGTTAAGGTAATGTGTAGCAGTTTTCGTAGCTTAGTTCCGATATTCGAGCGTCAGTGAATATGATTTTGAATATTATTCTGGCATCGTTACTTATTACATGAATCAGAGATGTTAGTAATTATCGTCCAGTATTTATGACAGATCGGTGTTTGTTAGCGCTTATTCGGTTGAAATGATTTATCCTACCATCTAGGGCAAAACTAAAGAAAAATCATTTTGAAATCGGTCAATAGTCCCGACTGATTTGTTAATAGATTATTTGTAAGGAGTCAAAGTTGATGTTAGTTAAATCCTCTTTTAAGCACATATTCGTTAATGAAACCCCTCGAGAGCATAGCTTCTCGTATAACAAATAATGGGACATTTCATAAAAATGACGCAAGGCAAAACTATGTGTAATGCTTGTTAATAAAAATTAGAAAAGAGAGAATACCCGAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTTATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCTGAAAAAAGGTTTTAGCGAGCTAAATTGATAATCAAGTTTGCATAAACTGGAGGAAAATTACCATATTAAATAGAAAAAATAAACTTGATGGACAAAACACCCTTATAAAATACTGGAGACCCGTTAGATGCACTGAACAAGATTTTCACAGTTAAATGCTACAAAATACAATGAGCTATAGTTCGCCAGTTTTAATAAGAATAACTTGATTTGACCATTTAACACTTTATCCAATCAGGGTTAGGAAATTA] [+] EMBL CD086126 [TGTTGTCGGATCCTCGTCGAACCGATAGTTAGTCATTGTGGTCTGACGTCACTATTGCGTGGAATCTAAGTGCGGTGATAGTTCAGTAATTTAGTTTTCGGGAGTGAAAGTGCACTTGACCAGACGTAAATTTTGTCGAAGTACGAGTTAGGTGCTTAACTTTTAAGATGATCTGCTGCGAAATTCTTCCTCTTTACTTAAGTTTATAAGTGAGAAAAACCTCTTACGACTTCCTCAGA ] [+] EMBL CD094697 [ CTCTTTACTTAAGTTTATAAGTGAGAAAAACCTCTTACGACTTCCTCAGATATAGTGATGACCATTCGGACTAAGAAAGTGGTTCAAGACTTAAAAATGTATTTCAACTCATCAGACTACTGACGAATCCTAGGTCTCGAGAACAGAGCTTTAAGACTATCAGATCCGTACTTTATTTTGTGCAACAGGATAGATAATGAACTCGCATGTGTTTGTACTAACTAGTGAACTGTCAATGAATTAATTTCCTAGTAATGAAGACGTTATTCTAATAGAGCAATTGGAAATGTGCCTGACTTTTGGGAAATATGTGACAAAAGAGCTATTAAGGTAGACTTCAACTACATTTTAGTAGTTAAACGTGCTGAGGTCAATTTTCATAGTACATTTTCAGAATTAGCCACTCTAAGAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGTGATATTGATTTATTAAATTCTGAAGTCTTCTACACCGT ] [+] EMBL CD152723 [ tagggggggACTACATTTTAGTAGTTAAACGTGCTGAGGTCAATTTTCATAGTACATTTTCAGAATTAGCCACTCTAAGAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGTGATATTGATTTATTAAATTCTGAAGTCTTCTACACCGTAATCGACTCAGAGTTAAGGTAATGTGTAGCAGTTTTCGTAGCTTAGTTCCGATATTCGAGCGTCAGTGAATATGATTTTGAATATTATTCTGGCATCGTTACTTATTACATGAATCAGAGATGTTAGTAATTATCGTCCAGTATTTATGACAGATCGGTGTTTGTTAGCGCTTATTCGGTTGAAATGATTTATCCTACCATCTAGGGCAAAACTAAAGAAAAATCATTTTGAAATCG ] [+] EMBL CD088609 [ TGTGTAGCAGTTTTCGTAGCTTAGTTCCGATATTCGAGCGTCAGTGAATATGATTTTGAATATTATTCTGGCATCGTTACTTATTACATGAATCAGAGATGTTAGTAATTATCGTCCAGTATTTATGACAGATCGGTGTTTGTTAGCGCTTATTCGGTTGAAATGATTTATCCTACCATCTAGGTCAAAACTAAAGAAAAATCATTTTGAAATCGGTCAATAGTCCCGACTGATTTGTTAATAGATTATTTGTAAGGAGTCAAAGTTGATGTTAGTTAAATCCTCTTTTAAGCACATATTCGTTAATGAAACCCCTCGAGAGCATAGCTTCTCGTATAACAAATAATGGGACATTTCATAAAAATGACGCAAGGCAAAACTATGTGTAATGCTTGTTAATAAAAATTAGAAAAGAGAGAATACCCGAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTTATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTG ] [-] EMBL CD088631 [ ACATATTCGNTAATGAAACCCCTCGAGAGCATAGCTTCTCGTATANCAAATAATGGGACATTTCATAAAAATGACGCAAGGCAAAACTATGTGTAATGCTTGTTAATAAAAATTAGAAAAGAGTGAATACCCGAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTTATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCTGAAAAAAGGTTTTAGCGAGCTAAATTGATAATCAAGTTTGCATAAACTGGAGGAAAATTACCATATTAAATAGAAAAAATAAACTTGATGGACAAAACACCCTTATAAAATACTGGAGACCCGTTAGATGCACTGAACAAGATTTTCACAGTTAAATGCTACAAAATACAATGAGCTATAGTTCGCCAGTTTTAATAAGAATAACTTGATTTGACCATTTAACACTTTATCCAATCAGGGTTAGGAAATTA] consensusID : consensus_8713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [GACTTCACACTACACTTTTAGTACACTAAACGTGCTGAGGACAATTTTCAAAGAACATTTTCAGAATTACGCCCTCTACAAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGCGAAATTGACTTACTAAATTCTGAAGTCTTCTACAGCGTCAGCGACTCAGAGTTAAGGTAAGCGTCCGCAATTTTCGTAGCTTAGTTCCGATATTCTAGCGTCAGTGAATATGAATTTGATTATTATTCT] [+] EMBL AI395393 [GACTTCACACTACACTTTTAGTACACTAAACGTGCTGAGGACAATTTTCAAAGAACATTTTCAGAATTACGCCCTCTACAAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGCGAAATTGACTTACTAAATTCTGAAGTCTTCTACAGCGTCAGCGACTCAGAGTTAAGGTAAGCGTCCGCAATTTTCGTAGCTTAGTTCCGATATTCTAGCGTCAGTGAATATGAATTTGATTATTATTCT] consensusID : consensus_8713#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [TTAGAAAAGAGTGAATACCCAAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTNATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCCGATTCATATTCCCTAGCCGATATACGACAAGCCACCC] [-] EMBL CD139337 [TTAGAAAAGAGTGAATACCCAAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTNATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCCGATTCATATTCCCTAGCCGATATACGACAAGCCACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8713#0 TGTTGTCGGATCCTCGTCGAACCGATAGTTAGTCATTGTGGTCTGACGTCACTATTGCGT 60 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 GGAATCTAAGTGCGGTGATAGTTCAGTAATTTAGTTTTCGGGAGTGAAAGTGCACTTGAC 120 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 CAGACGTAAATTTTGTCGAAGTACGAGTTAGGTGCTTAACTTTTAAGATGATCTGCTGCG 180 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 AAATTCTTCCTCTTTACTTAAGTTTATAAGTGAGAAAAACCTCTTACGACTTCCTCAGAT 240 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 ATAGTGATGACCATTCGGACTAAGAAAGTGGTTCAAGACTTAAAAATGTATTTCAACTCA 300 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 TCAGACTACTGACGAATCCTAGGTCTCGAGAACAGAGCTTTAAGACTATCAGATCCGTAC 360 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 TTTATTTTGTGCAACAGGATAGATAATGAACTCGCATGTGTTTGTACTAACTAGTGAACT 420 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 GTCAATGAATTAATTTCCTAGTAATGAAGACGTTATTCTAATAGAGCAATTGGAAATGTG 480 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 CCTGACTTTTGGGAAATATGTGACAAAAGAGCTATTAAGGTAGACTTCA-ACTACA-TTT 538 consensus_8713#1 ------------------------------------------GACTTCACACTACACTTT 18 consensus_8713#2 ---------------------------TTAGAAAAGAGTGAATACCCAAAAACAGGAATA 33 ** * * * * consensus_8713#0 TAGTA-GTT-AAACGTGCTGAGGTCAATTTTCATAGTACATTTTCAGAATTAGCCACTCT 596 consensus_8713#1 TAGTACACT-AAACGTGCTGAGGACAATTTTCAAAGAACATTTTCAGAATTACGCCCTCT 77 consensus_8713#2 CAGTTTGCTTAAATATACAGTGAAAA----TGAAATGAAATCGGAATAGTNATTCACGCA 89 *** * *** * * * * * * * * * ** * * * * * * * consensus_8713#0 AAGAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGTGATATTG 656 consensus_8713#1 ACAAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGCGAAATTG 137 consensus_8713#2 ATAATTTCTCGAAGT-----TTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGG 144 * * * * * * * * **** * ** *** * * ** * consensus_8713#0 ATTTATTAAATTCTGAAGTCTTCTACACCGTAATCGA-CTCAGAGTTAAGGTAATGTGTA 715 consensus_8713#1 ACTTACTAAATTCTGAAGTCTTCTACAGCGTCAGCGA-CTCAGAGTTAAGGTAAGCGTCC 196 consensus_8713#2 ACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCCG 204 * * *** * * * *** ** ** * * * ** *** consensus_8713#0 G--CAGTTTTCGTAGCTTAGTTCCGATATTCGAGCGTCAGTGAATATGATTTTGAATATT 773 consensus_8713#1 G--CAATTTTCGTAGCTTAGTTCCGATATTCTAGCGTCAGTGAATATGAATTTGATTATT 254 consensus_8713#2 ATTCATATTCCCTAGCCGATATACGACAAGCCACCC------------------------ 240 ** ** * **** * * *** * * * * consensus_8713#0 ATTCTGGCATCGTTACTTATTACATGAATCAGAGATGTTAGTAATTATCGTCCAGTATTT 833 consensus_8713#1 ATTCT------------------------------------------------------- 259 consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 ATGACAGATCGGTGTTTGTTAGCGCTTATTCGGTTGAAATGATTTATCCTACCATCTAGG 893 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 GCAAAACTAAAGAAAAATCATTTTGAAATCGGTCAATAGTCCCGACTGATTTGTTAATAG 953 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 ATTATTTGTAAGGAGTCAAAGTTGATGTTAGTTAAATCCTCTTTTAAGCACATATTCGTT 1013 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 AATGAAACCCCTCGAGAGCATAGCTTCTCGTATAACAAATAATGGGACATTTCATAAAAA 1073 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 TGACGCAAGGCAAAACTATGTGTAATGCTTGTTAATAAAAATTAGAAAAGAGAGAATACC 1133 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 CGAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGT 1193 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 TATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGT 1253 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 CATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAA 1313 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 AGCTGAAAAAAGGTTTTAGCGAGCTAAATTGATAATCAAGTTTGCATAAACTGGAGGAAA 1373 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 ATTACCATATTAAATAGAAAAAATAAACTTGATGGACAAAACACCCTTATAAAATACTGG 1433 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 AGACCCGTTAGATGCACTGAACAAGATTTTCACAGTTAAATGCTACAAAATACAATGAGC 1493 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 TATAGTTCGCCAGTTTTAATAAGAATAACTTGATTTGACCATTTAACACTTTATCCAATC 1553 consensus_8713#1 ------------------------------------------------------------ consensus_8713#2 ------------------------------------------------------------ consensus_8713#0 AGGGTTAGGAAATTA 1568 consensus_8713#1 --------------- consensus_8713#2 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||