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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1568 fasta sequence
[TGTTGTCGGATCCTCGTCGAACCGATAGTTAGTCATTGTGGTCTGACGTCACTATTGCGTGGAATCTAAGTGCGGTGATAGTTCAGTAATTTAGTTTTCGGGAGTGAAAGTGCACTTGACCAGACGTAAATTTTGTCGAAGTACGAGTTAGGTGCTTAACTTTTAAGATGATCTGCTGCGAAATTCTTCCTCTTTACTTAAGTTTATAAGTGAGAAAAACCTCTTACGACTTCCTCAGATATAGTGATGACCATTCGGACTAAGAAAGTGGTTCAAGACTTAAAAATGTATTTCAACTCATCAGACTACTGACGAATCCTAGGTCTCGAGAACAGAGCTTTAAGACTATCAGATCCGTACTTTATTTTGTGCAACAGGATAGATAATGAACTCGCATGTGTTTGTACTAACTAGTGAACTGTCAATGAATTAATTTCCTAGTAATGAAGACGTTATTCTAATAGAGCAATTGGAAATGTGCCTGACTTTTGGGAAATATGTGACAAAAGAGCTATTAAGGTAGACTTCAACTACATTTTAGTAGTTAAACGTGCTGAGGTCAATTTTCATAGTACATTTTCAGAATTAGCCACTCTAAGAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGTGATATTGATTTATTAAATTCTGAAGTCTTCTACACCGTAATCGACTCAGAGTTAAGGTAATGTGTAGCAGTTTTCGTAGCTTAGTTCCGATATTCGAGCGTCAGTGAATATGATTTTGAATATTATTCTGGCATCGTTACTTATTACATGAATCAGAGATGTTAGTAATTATCGTCCAGTATTTATGACAGATCGGTGTTTGTTAGCGCTTATTCGGTTGAAATGATTTATCCTACCATCTAGGGCAAAACTAAAGAAAAATCATTTTGAAATCGGTCAATAGTCCCGACTGATTTGTTAATAGATTATTTGTAAGGAGTCAAAGTTGATGTTAGTTAAATCCTCTTTTAAGCACATATTCGTTAATGAAACCCCTCGAGAGCATAGCTTCTCGTATAACAAATAATGGGACATTTCATAAAAATGACGCAAGGCAAAACTATGTGTAATGCTTGTTAATAAAAATTAGAAAAGAGAGAATACCCGAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTTATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCTGAAAAAAGGTTTTAGCGAGCTAAATTGATAATCAAGTTTGCATAAACTGGAGGAAAATTACCATATTAAATAGAAAAAATAAACTTGATGGACAAAACACCCTTATAAAATACTGGAGACCCGTTAGATGCACTGAACAAGATTTTCACAGTTAAATGCTACAAAATACAATGAGCTATAGTTCGCCAGTTTTAATAAGAATAACTTGATTTGACCATTTAACACTTTATCCAATCAGGGTTAGGAAATTA]
[+] EMBL CD086126 [TGTTGTCGGATCCTCGTCGAACCGATAGTTAGTCATTGTGGTCTGACGTCACTATTGCGTGGAATCTAAGTGCGGTGATAGTTCAGTAATTTAGTTTTCGGGAGTGAAAGTGCACTTGACCAGACGTAAATTTTGTCGAAGTACGAGTTAGGTGCTTAACTTTTAAGATGATCTGCTGCGAAATTCTTCCTCTTTACTTAAGTTTATAAGTGAGAAAAACCTCTTACGACTTCCTCAGA ]
[+] EMBL CD094697 [ CTCTTTACTTAAGTTTATAAGTGAGAAAAACCTCTTACGACTTCCTCAGATATAGTGATGACCATTCGGACTAAGAAAGTGGTTCAAGACTTAAAAATGTATTTCAACTCATCAGACTACTGACGAATCCTAGGTCTCGAGAACAGAGCTTTAAGACTATCAGATCCGTACTTTATTTTGTGCAACAGGATAGATAATGAACTCGCATGTGTTTGTACTAACTAGTGAACTGTCAATGAATTAATTTCCTAGTAATGAAGACGTTATTCTAATAGAGCAATTGGAAATGTGCCTGACTTTTGGGAAATATGTGACAAAAGAGCTATTAAGGTAGACTTCAACTACATTTTAGTAGTTAAACGTGCTGAGGTCAATTTTCATAGTACATTTTCAGAATTAGCCACTCTAAGAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGTGATATTGATTTATTAAATTCTGAAGTCTTCTACACCGT ]
[+] EMBL CD152723 [ tagggggggACTACATTTTAGTAGTTAAACGTGCTGAGGTCAATTTTCATAGTACATTTTCAGAATTAGCCACTCTAAGAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGTGATATTGATTTATTAAATTCTGAAGTCTTCTACACCGTAATCGACTCAGAGTTAAGGTAATGTGTAGCAGTTTTCGTAGCTTAGTTCCGATATTCGAGCGTCAGTGAATATGATTTTGAATATTATTCTGGCATCGTTACTTATTACATGAATCAGAGATGTTAGTAATTATCGTCCAGTATTTATGACAGATCGGTGTTTGTTAGCGCTTATTCGGTTGAAATGATTTATCCTACCATCTAGGGCAAAACTAAAGAAAAATCATTTTGAAATCG ]
[+] EMBL CD088609 [ TGTGTAGCAGTTTTCGTAGCTTAGTTCCGATATTCGAGCGTCAGTGAATATGATTTTGAATATTATTCTGGCATCGTTACTTATTACATGAATCAGAGATGTTAGTAATTATCGTCCAGTATTTATGACAGATCGGTGTTTGTTAGCGCTTATTCGGTTGAAATGATTTATCCTACCATCTAGGTCAAAACTAAAGAAAAATCATTTTGAAATCGGTCAATAGTCCCGACTGATTTGTTAATAGATTATTTGTAAGGAGTCAAAGTTGATGTTAGTTAAATCCTCTTTTAAGCACATATTCGTTAATGAAACCCCTCGAGAGCATAGCTTCTCGTATAACAAATAATGGGACATTTCATAAAAATGACGCAAGGCAAAACTATGTGTAATGCTTGTTAATAAAAATTAGAAAAGAGAGAATACCCGAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTTATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTG ]
[-] EMBL CD088631 [ ACATATTCGNTAATGAAACCCCTCGAGAGCATAGCTTCTCGTATANCAAATAATGGGACATTTCATAAAAATGACGCAAGGCAAAACTATGTGTAATGCTTGTTAATAAAAATTAGAAAAGAGTGAATACCCGAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTTATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCTGAAAAAAGGTTTTAGCGAGCTAAATTGATAATCAAGTTTGCATAAACTGGAGGAAAATTACCATATTAAATAGAAAAAATAAACTTGATGGACAAAACACCCTTATAAAATACTGGAGACCCGTTAGATGCACTGAACAAGATTTTCACAGTTAAATGCTACAAAATACAATGAGCTATAGTTCGCCAGTTTTAATAAGAATAACTTGATTTGACCATTTAACACTTTATCCAATCAGGGTTAGGAAATTA]
consensusID : consensus_8713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence
[GACTTCACACTACACTTTTAGTACACTAAACGTGCTGAGGACAATTTTCAAAGAACATTTTCAGAATTACGCCCTCTACAAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGCGAAATTGACTTACTAAATTCTGAAGTCTTCTACAGCGTCAGCGACTCAGAGTTAAGGTAAGCGTCCGCAATTTTCGTAGCTTAGTTCCGATATTCTAGCGTCAGTGAATATGAATTTGATTATTATTCT]
[+] EMBL AI395393 [GACTTCACACTACACTTTTAGTACACTAAACGTGCTGAGGACAATTTTCAAAGAACATTTTCAGAATTACGCCCTCTACAAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGCGAAATTGACTTACTAAATTCTGAAGTCTTCTACAGCGTCAGCGACTCAGAGTTAAGGTAAGCGTCCGCAATTTTCGTAGCTTAGTTCCGATATTCTAGCGTCAGTGAATATGAATTTGATTATTATTCT]
consensusID : consensus_8713#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence
[TTAGAAAAGAGTGAATACCCAAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTNATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCCGATTCATATTCCCTAGCCGATATACGACAAGCCACCC]
[-] EMBL CD139337 [TTAGAAAAGAGTGAATACCCAAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGTNATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCCGATTCATATTCCCTAGCCGATATACGACAAGCCACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8713#0 TGTTGTCGGATCCTCGTCGAACCGATAGTTAGTCATTGTGGTCTGACGTCACTATTGCGT 60
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 GGAATCTAAGTGCGGTGATAGTTCAGTAATTTAGTTTTCGGGAGTGAAAGTGCACTTGAC 120
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 CAGACGTAAATTTTGTCGAAGTACGAGTTAGGTGCTTAACTTTTAAGATGATCTGCTGCG 180
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 AAATTCTTCCTCTTTACTTAAGTTTATAAGTGAGAAAAACCTCTTACGACTTCCTCAGAT 240
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 ATAGTGATGACCATTCGGACTAAGAAAGTGGTTCAAGACTTAAAAATGTATTTCAACTCA 300
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 TCAGACTACTGACGAATCCTAGGTCTCGAGAACAGAGCTTTAAGACTATCAGATCCGTAC 360
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 TTTATTTTGTGCAACAGGATAGATAATGAACTCGCATGTGTTTGTACTAACTAGTGAACT 420
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 GTCAATGAATTAATTTCCTAGTAATGAAGACGTTATTCTAATAGAGCAATTGGAAATGTG 480
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 CCTGACTTTTGGGAAATATGTGACAAAAGAGCTATTAAGGTAGACTTCA-ACTACA-TTT 538
consensus_8713#1 ------------------------------------------GACTTCACACTACACTTT 18
consensus_8713#2 ---------------------------TTAGAAAAGAGTGAATACCCAAAAACAGGAATA 33
** * * * *
consensus_8713#0 TAGTA-GTT-AAACGTGCTGAGGTCAATTTTCATAGTACATTTTCAGAATTAGCCACTCT 596
consensus_8713#1 TAGTACACT-AAACGTGCTGAGGACAATTTTCAAAGAACATTTTCAGAATTACGCCCTCT 77
consensus_8713#2 CAGTTTGCTTAAATATACAGTGAAAA----TGAAATGAAATCGGAATAGTNATTCACGCA 89
*** * *** * * * * * * * * * ** * * * * * * *
consensus_8713#0 AAGAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGTGATATTG 656
consensus_8713#1 ACAAATACGTGCAATACCGATCGAGTACTACGTCGGCCCCGCTTCAGATTTGCGAAATTG 137
consensus_8713#2 ATAATTTCTCGAAGT-----TTATGTACGAAGTGAAACCCAGAGAAACCACTCGTCATGG 144
* * * * * * * * **** * ** *** * * ** *
consensus_8713#0 ATTTATTAAATTCTGAAGTCTTCTACACCGTAATCGA-CTCAGAGTTAAGGTAATGTGTA 715
consensus_8713#1 ACTTACTAAATTCTGAAGTCTTCTACAGCGTCAGCGA-CTCAGAGTTAAGGTAAGCGTCC 196
consensus_8713#2 ACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAAAGCCG 204
* * *** * * * *** ** ** * * * ** ***
consensus_8713#0 G--CAGTTTTCGTAGCTTAGTTCCGATATTCGAGCGTCAGTGAATATGATTTTGAATATT 773
consensus_8713#1 G--CAATTTTCGTAGCTTAGTTCCGATATTCTAGCGTCAGTGAATATGAATTTGATTATT 254
consensus_8713#2 ATTCATATTCCCTAGCCGATATACGACAAGCCACCC------------------------ 240
** ** * **** * * *** * * * *
consensus_8713#0 ATTCTGGCATCGTTACTTATTACATGAATCAGAGATGTTAGTAATTATCGTCCAGTATTT 833
consensus_8713#1 ATTCT------------------------------------------------------- 259
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 ATGACAGATCGGTGTTTGTTAGCGCTTATTCGGTTGAAATGATTTATCCTACCATCTAGG 893
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 GCAAAACTAAAGAAAAATCATTTTGAAATCGGTCAATAGTCCCGACTGATTTGTTAATAG 953
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 ATTATTTGTAAGGAGTCAAAGTTGATGTTAGTTAAATCCTCTTTTAAGCACATATTCGTT 1013
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 AATGAAACCCCTCGAGAGCATAGCTTCTCGTATAACAAATAATGGGACATTTCATAAAAA 1073
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 TGACGCAAGGCAAAACTATGTGTAATGCTTGTTAATAAAAATTAGAAAAGAGAGAATACC 1133
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 CGAAAACAGGAATACAGTTTGCTTAAATATACAGTGAAAATGAAATGAAATCGGAATAGT 1193
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 TATTCACGCAATAATTTCTCGAAGTTTATGTACGAAGTGAAACCCAGAGAAACCACTCGT 1253
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 CATGGACGGGATGAATCCAGCCATATTCGGTGGCGATTGTGAACACTGGGTGGGATTAAA 1313
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 AGCTGAAAAAAGGTTTTAGCGAGCTAAATTGATAATCAAGTTTGCATAAACTGGAGGAAA 1373
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 ATTACCATATTAAATAGAAAAAATAAACTTGATGGACAAAACACCCTTATAAAATACTGG 1433
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 AGACCCGTTAGATGCACTGAACAAGATTTTCACAGTTAAATGCTACAAAATACAATGAGC 1493
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 TATAGTTCGCCAGTTTTAATAAGAATAACTTGATTTGACCATTTAACACTTTATCCAATC 1553
consensus_8713#1 ------------------------------------------------------------
consensus_8713#2 ------------------------------------------------------------
consensus_8713#0 AGGGTTAGGAAATTA 1568
consensus_8713#1 ---------------
consensus_8713#2 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||