cluster # 8714

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Schistosoma mansoni
cluster # 8714 cluster # 8714 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8714#0 length = 931 sequences # 5

consensus_8714#1 length = 553 sequences # 1
consensus_8714#2 length = 305 sequences # 1

consensusID : consensus_8714#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 931
fasta sequence

                              [GACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGTGATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCCAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGATGCAGTTTTGGCAGTTAGAGGTACTCATCAACTTTAGATACTTCTCAATTTTCTTAGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTATCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGTTGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTATAATGTCTTGTGATGCTGTCTTGCAAAGCGATCCACAAAATATTAAGGCTTTATTCAGGAAAGGAAAGGCTCTTTTGGAAATGAACGAAGTAGATGATGCTATCCCAATCCTCCAGAAAGTACTAACAATATCCCCAGGCTCACAAATGGCTAGTGTTGAGTTAGCTCGTGCCCAAGCTGTACGACAGAAAGAACGAGAGCATTGGTCACGGTCTGTTAACCGTAGGTTCCCGAAAACTAAACAAAATAAGAATATAAAACTGTCCGCTGCATCCAGAGTTAAACT]

[+] EMBL CD161920             [GACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGTGATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCCAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGATGCAGTTTTGGCAGTTAGAGGTACTCATCAACTTTAGATACTTCTCAATTTTCTTAGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTATCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGATATTTCCGGANACCGACTGTTCAGCAGAGCTTAT                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD062384             [                                                                                                                                                                                                                                                                                                 tggacGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTATCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGTTGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTATAATGTCTTGTGATGCTGTCTTGCAAAGCGATC                                                                                                                                                                                                                                                             ]
[+] EMBL CD082223             [                                                                                                                                                                                                                                                                                                                                     tacgaggCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCCAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTATCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGTTGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTATAATGTCTTGTGATGCTGTCTTGCAAAGCGATCCACAAAATATTAAGGCTTTATTCAGGAAAGGAAAGGCTCTTTTGGAAATGAACGAAGTAGATGATGCTATCCCAATCCTCCAGAAAGTACTAACAATATCCCCAGGCTCACAAATGGCTAGTGTTGAGTTAGCTCGTGCCCAAGCTGTACGACAGAAAGAACGAGAGCATTGGTCACGGTCTGTTAACCGTAGGTTCCCGAAAACTAAACAAAATAAGAATATAAAACTGTCCGCTGCATCCAGAGTTAAACT]
[-] EMBL CD189589             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGTTGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTATAATGTCTTGTGATGCTGTCTTGCAAAGCGATCCACAAAATATTAAGGCTTTATTCAGGAAAGGAAAGGCTCTTTTGGAAATGAACGAAGTAGATGATGCTATCCCAATCCTCCAGAAAGTACTA                                                                                                                                                                 ]
[+] EMBL CD121047             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAAGGCTCTTTTGGAAATGAACGAAGTGGATGATGCTATCCCAATCCTCCAGAAAGTACTAACAATATCCCCAGGCTCACAAATGGCTAGTGTTGAGTT                                                                                                                           ]




>consensus_8714#0
GACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGTGATTCTGTCGTTGT
AAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAAT
GGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCA
CAAAGAGATATTCCAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGATG
CAGTTTTGGCAGTTAGAGGTACTCATCAACTTTAGATACTTCTCAATTTTCTTAGGGATC
CTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACC
CTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGAAAG
ACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTATCGACAGCTATAACA
AAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGTCTTCAGAAGAGAAAT
TTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGTTGAAATTAGAAAATA
ATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTATAATGTCTTGTGATG
CTGTCTTGCAAAGCGATCCACAAAATATTAAGGCTTTATTCAGGAAAGGAAAGGCTCTTT
TGGAAATGAACGAAGTAGATGATGCTATCCCAATCCTCCAGAAAGTACTAACAATATCCC
CAGGCTCACAAATGGCTAGTGTTGAGTTAGCTCGTGCCCAAGCTGTACGACAGAAAGAAC
GAGAGCATTGGTCACGGTCTGTTAACCGTAGGTTCCCGAAAACTAAACAAAATAAGAATA
TAAAACTGTCCGCTGCATCCAGAGTTAAACT

consensusID : consensus_8714#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [CGCAAGAAAGGTCAAAAGTATGACCACCAGTTGAAAAGTTCCAATGTGCAACAGTCTTCTGAAAAACTAGCCACAGAAGGCAGCACAAGTAAATCCACGGACGGTGTTAAATTACCGGAGTCACCTGATCAAGATGTTGATGCTAGTAGTGGGGAGACTATCGATGTTTTAGGGAATGGTCTCATCATTAAAAAGACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGTGATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGA]

[+] EMBL AI975064             [CGCAAGAAAGGTCAAAAGTATGACCACCAGTTGAAAAGTTCCAATGTGCAACAGTCTTCTGAAAAACTAGCCACAGAAGGCAGCACAAGTAAATCCACGGACGGTGTTAAATTACCGGAGTCACCTGATCAAGATGTTGATGCTAGTAGTGGGGAGACTATCGATGTTTTAGGGAATGGTCTCATCATTAAAAAGACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGTGATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTGCTAATCAGAAGA]




>consensus_8714#1
CGCAAGAAAGGTCAAAAGTATGACCACCAGTTGAAAAGTTCCAATGTGCAACAGTCTTCT
GAAAAACTAGCCACAGAAGGCAGCACAAGTAAATCCACGGACGGTGTTAAATTACCGGAG
TCACCTGATCAAGATGTTGATGCTAGTAGTGGGGAGACTATCGATGTTTTAGGGAATGGT
CTCATCATTAAAAAGACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGT
GATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTC
GAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATT
CCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGA
TCTCGTGGACGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTT
TTAAAAGTTGATGACCCTCCTTGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTT
GCTAATCAGAAGA

consensusID : consensus_8714#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [GTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGGTAGGTTGTGAGAAATAACTCTCCTACAAGATTTGTTCCGAAATCGCTCCATGCTGTAATGTTTGAGGTTCTGAATTTTCTCAAGTGTTATGTAAGTATAAAATACTGACGACCTTGGGCGACTTA]

[+] EMBL CD190465             [GTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGGTAGGTTGTGAGAAATAACTCTCCTACAAGATTTGTTCCGAAATCGCTCCATGCTGTAATGTTTGAGGTTCTGAATTTTCTCAAGTGTTATGTAAGTATAAAATACTGACGACCTTGGGCGACTTA]




>consensus_8714#2
GTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTCGAAGATGTGAAA
ATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATTCCACTGGCTGAG
CACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGATCTCGTGGACGG
TAGGTTGTGAGAAATAACTCTCCTACAAGATTTGTTCCGAAATCGCTCCATGCTGTAATG
TTTGAGGTTCTGAATTTTCTCAAGTGTTATGTAAGTATAAAATACTGACGACCTTGGGCG
ACTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8714#0      ------------------------------------------------------------
consensus_8714#1      CGCAAGAAAGGTCAAAAGTATGACCACCAGTTGAAAAGTTCCAATGTGCAACAGTCTTCT 60
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      ------------------------------------------------------------
consensus_8714#1      GAAAAACTAGCCACAGAAGGCAGCACAAGTAAATCCACGGACGGTGTTAAATTACCGGAG 120
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      ------------------------------------------------------------
consensus_8714#1      TCACCTGATCAAGATGTTGATGCTAGTAGTGGGGAGACTATCGATGTTTTAGGGAATGGT 180
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      --------------GACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGT 46
consensus_8714#1      CTCATCATTAAAAAGACTTTGAAAAAAGGTCTCGGTGGGGAAACTCGTCCCAGTCATGGT 240
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      GATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTC 106
consensus_8714#1      GATTCTGTCGTTGTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTC 300
consensus_8714#2      ------------GTAAATTACAAATGTTGGCTGGAAGATGGAACGCTTGTTGACGACGTC 48
                                  ************************************************

consensus_8714#0      GAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATT 166
consensus_8714#1      GAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATT 360
consensus_8714#2      GAAGATGTGAAAATGGTCCTTGGTGATGGTGATATAATACATGCATTTGACCTCTCTATT 108
                      ************************************************************

consensus_8714#0      CCACTGGCTGAGCACAAAGAGATATTCCAAATGACAACTGACTCCCGGTTCGCTTATGGA 226
consensus_8714#1      CCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGA 420
consensus_8714#2      CCACTGGCTGAGCACAAAGAGATATTCGAAATGACAACTGACTCCCGGTTCGCTTATGGA 168
                      *************************** ********************************

consensus_8714#0      TCTCGTGGACGATGCAGTTTTGGCAGTTAGAGGTACTCATCAACTTTAGATACTTCTCAA 286
consensus_8714#1      TCTCGTGGACG------------------------------------------------- 431
consensus_8714#2      TCTCGTGGACGGTAGGTTGTGAGAAAT--------------------------------- 195
                      ***********                                                 

consensus_8714#0      TTTTCTTAGGGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTT 346
consensus_8714#1      ---------GGATCCTGGTATCCCATCAGGGGCAAAGTTAACTTATCGCATTGAAGTTTT 482
consensus_8714#2      ----------AACTCTCCTACAAGATTTGTTCCGAAATCGCTCCAT-GCTGTAATGTTTG 244
                                 *  **  **    **  *   * ** *      ** **  * * **** 

consensus_8714#0      AAAAGTTGATGACCCTCCT-TGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTG 405
consensus_8714#1      AAAAGTTGATGACCCTCCT-TGTTATGCTAGTATGTCGAATTCGGAAAGACTTGCAGTTG 541
consensus_8714#2      AGGTTCTGAATTTTCTCAAGTGTTATGTAAGTATA--AAATACTGACGACCTTG-GGCGA 301
                      *     ***     ***   *******  *****    *** * **    ****  *   

consensus_8714#0      CTAATCAGAAGAAAGACAGAGGCAACTATTACTACAGGAGAGAAGAATTTGCATTCGCTA 465
consensus_8714#1      CTAATCAGAAGA------------------------------------------------ 553
consensus_8714#2      CTTA-------------------------------------------------------- 305
                      ** *                                                        

consensus_8714#0      TCGACAGCTATAACAAAGCATTGAAAATTTTACAATTGCCTCCTGTGATTCCTACCCGGT 525
consensus_8714#1      ------------------------------------------------------------
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      CTTCAGAAGAGAAATTTCCGGAAACCGACTGTTCAGCAGAGCTTATTAATGATGCAAAGT 585
consensus_8714#1      ------------------------------------------------------------
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      TGAAATTAGAAAATAATCTCGCAGCTGCTCAGTTAAAGGTAGAAGCATACGATGCCGCTA 645
consensus_8714#1      ------------------------------------------------------------
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      TAATGTCTTGTGATGCTGTCTTGCAAAGCGATCCACAAAATATTAAGGCTTTATTCAGGA 705
consensus_8714#1      ------------------------------------------------------------
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      AAGGAAAGGCTCTTTTGGAAATGAACGAAGTAGATGATGCTATCCCAATCCTCCAGAAAG 765
consensus_8714#1      ------------------------------------------------------------
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      TACTAACAATATCCCCAGGCTCACAAATGGCTAGTGTTGAGTTAGCTCGTGCCCAAGCTG 825
consensus_8714#1      ------------------------------------------------------------
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      TACGACAGAAAGAACGAGAGCATTGGTCACGGTCTGTTAACCGTAGGTTCCCGAAAACTA 885
consensus_8714#1      ------------------------------------------------------------
consensus_8714#2      ------------------------------------------------------------
                                                                                  

consensus_8714#0      AACAAAATAAGAATATAAAACTGTCCGCTGCATCCAGAGTTAAACT 931
consensus_8714#1      ----------------------------------------------
consensus_8714#2      ----------------------------------------------