cluster # 8717

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Schistosoma mansoni
cluster # 8717 cluster # 8717 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8717#0 length = 885 sequences # 5

consensus_8717#1 length = 372 sequences # 1
consensus_8717#2 length = 151 sequences # 1

consensusID : consensus_8717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 885
fasta sequence

                              [AATGTTTATATTGTTTTGTTACATTGAAAGATACTATACCAAATGATCATATGAATGGTTTCATGGATGTTGATATAATTACACAAGAAATGAAATCAGAATTATGTCAAAT--TACGAACAAAAATTGG-ACCATTTGCTACTCCAGATTACATTCAGAGTGCCCCTGTGCTACCAAAAACACGTAGTGGTAAAATTATAAGACGTATTTTACGAAAAATAGCTAATGAAGATTATGAATTCGGTGATACATCAACTTTATTGGATTATTCTTGTTTAGAAACTTTAATTAAATTATCAAAATCCGTCATAAATCAATAAATGAGTAGTTGAATGTGGTTCTTAAGTTTCCTTAATTTCCTTTTATCTCCTTGATCTTCTTTAAACTAAGAGTAAAGTGTATAACAATCACAGAAATAGAAGATAATGATACATTCAATATACCTTTATATCATTACTATTATCATCATCATTTCCATTGAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTAATTCATTCTCCTCTCTTGTCATATCACGAAGAAGTGTTTTATCTTCAATGTGTTTATTTATTTATCTATTTATCTCTTCTTATCATACACTATTATCAGTTGCATTATTATTAACACTGGTGTTCGTGTTGCTATAGTTACACAGGACTCTTGTGTGAACTGTGCAACCTTTCATAGGTATTAGTCTATTTCTGCGAACTGCATAACTTACTTTTATTGTTACTATTTATTGTGTACTTATCTATTCTGTTAAAATGTCTCCGTTCCCATATAATTACACGCACATACATCGTTAGTTAATACGACTACTACCACCATGGTTATTATTACTGTTATCCATATTATTGCAATCTTT]

[+] EMBL CD139624             [AATGTTTATATTGTTTTGTTACATTGAAAGATACTATACCAAATGATCATATGAATGGTTTCATGGATGTTGATATAATTACACAAGAAATGAAATCAGAATTATGTCAAATGATACGAACAAAAATTGG ACCATTTGCTACTCCAGATTACATTCAGAGTGCCCCTGTGCTACCAAAAACACGTAGTGGTAAAATTATAAGACGTATTTTACGAAAAATAGCTAATGAGGATTATGAATACGGTGATACATCAACTTTATTGGATTATTCTTGTTTAGAAACTTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD080202             [                                                                                                              tc  cgaggcCANAATTCGGCACGAGGTGCTACTCCAAATTACATTCAGAGTGCCCCTGTGCTACCAAAAACACGTAGTGGTAAAATTATAAGACGTATTTTACGAAAAATAGCTAATGAAGATTATGAATTCGGTGATACATCAACTTTATTGGATTATTCTTGTTTAGAAACTTTAATTAAATTATCAAAATCCGTCATAAATCAATAAATGAGTAGTTGAATGTGGTTCTTAAGTTTCCTTAATTTCCTTTTATCTCCTTGATCTTCTTTAAACTAAGAGTAAAGTGTATAACAATCACAGAAATAGAAGATAATGATACATTCAATATACCTTTATATCATTACTATTATCATCATCATTTCCATTGAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTAATTCATTCTCCTCTCTTGTCATATCACGAAGAAGTGTTTTATCTTCAATGTGTTTATTTATTTATCTATTTATCTCTTCTTATCATACACTATTATCAGTTGCATTATTATTAACACTGGTGTTCGTGTTGCTATAGTTACACAGGACTCTTGTGTGAACTGTGCAACCTTTCATAGGTATTAGTCTATTTCTGCGAACTGCATAACTTACTTTTATTGTTACTATTTATTGTGTACTTATCTATTCTGTTAAAATGTCTCCGTTCCCATATAATTACACGCACATACATCGTTAGTTAATACGACTACTACCACCATGG                                   ]
[-] EMBL CD141478             [                                                                                                                                                                                                                                TAATGAAGATTATGAATTCGGTGATACGTCAACTTTATTGGATTATTCTTGTTTAGAAACTTTAATTAAATTATCAAAATCCGTCATAAATCAATAAATGAGTAGTTGAATGTGGTTCTTAAGTTTCCTTAATTTCCTTTTATCTCCTTGATCTTCTTTAAACTAAGAGTAAAGTGTATAACAATCACAGAAATAGAAGATAATGATACATTCAATATACCTTTATATCATTACTATTATCATCATCATTTCCATTGAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTA                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD063098             [                                                                                                                                                                                                                                                                                                                                            anTGTGGTTCTTAAGTTTCCTTAATTTCCTTTTATCTCCTTGATCTTCTTTAAACTAAGAGTAAAGTGTATAACAATCACAGAAATAGAAGATAATGATACATTCAATATACCTTTATATCATTACTATTATCATCATCATTTCCATTGAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTAATTCATTCTCCTCTCTTGTCATATCACGAAGAAGTGTTTTATCTTCAATGTGTTTATTTATTTATCTATTTATCTCTTCTTATCATACACTATTATCAGTTGCATTATTATTAACACTGGTGTTCGTGTTGCTATAGTTACACAGGACTCTTGTGTGAACTGTGCAACCTTTCATAGGTATTAGTCTATTTCTGCGAACTGCATAACTTACTTTTATTGTTACTATTTATTGTGTACTT                                                                                                                    ]
[+] EMBL CD178993             [                                                                                                                                                                                                                                                                                                                                                                                                                                  AGAAGATAATGATACATTCAATATACCTTTATATCATTACTATTATCATCATCATTTCCATTGAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTAATTCATTCTCCTCTCTTGTCATATCACGAAGAAGTGTTTTATCTTCAATGTGTTTATTTATTTATCTATTTATCTCTTCTTATCATACACTATTATCAGTTGCATTATTATTAACACTGGTGTTCGTGTTGCTATAGTTACACAGGACCCTTGTGTGAACTGTGCAACCTTTCATAGGTATTAGTCTATTTCTGCGAACTGCATAACTTACTTTTATTGTTACTATTTATTGTGTACTTATCTATTCTGTTAAAATGTCTCCGTTCCCATATAATTACACGCACATACATCGTTAGTTAATACGACTACTACCACCATGGTTATTATTACTGTTATCCATATTATTGCAATCTTT]




>consensus_8717#0
AATGTTTATATTGTTTTGTTACATTGAAAGATACTATACCAAATGATCATATGAATGGTT
TCATGGATGTTGATATAATTACACAAGAAATGAAATCAGAATTATGTCAAATTACGAACA
AAAATTGGACCATTTGCTACTCCAGATTACATTCAGAGTGCCCCTGTGCTACCAAAAACA
CGTAGTGGTAAAATTATAAGACGTATTTTACGAAAAATAGCTAATGAAGATTATGAATTC
GGTGATACATCAACTTTATTGGATTATTCTTGTTTAGAAACTTTAATTAAATTATCAAAA
TCCGTCATAAATCAATAAATGAGTAGTTGAATGTGGTTCTTAAGTTTCCTTAATTTCCTT
TTATCTCCTTGATCTTCTTTAAACTAAGAGTAAAGTGTATAACAATCACAGAAATAGAAG
ATAATGATACATTCAATATACCTTTATATCATTACTATTATCATCATCATTTCCATTGAA
GTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTAATTCATTCTC
CTCTCTTGTCATATCACGAAGAAGTGTTTTATCTTCAATGTGTTTATTTATTTATCTATT
TATCTCTTCTTATCATACACTATTATCAGTTGCATTATTATTAACACTGGTGTTCGTGTT
GCTATAGTTACACAGGACTCTTGTGTGAACTGTGCAACCTTTCATAGGTATTAGTCTATT
TCTGCGAACTGCATAACTTACTTTTATTGTTACTATTTATTGTGTACTTATCTATTCTGT
TAAAATGTCTCCGTTCCCATATAATTACACGCACATACATCGTTAGTTAATACGACTACT
ACCACCATGGTTATTATTACTGTTATCCATATTATTGCAATCTTT

consensusID : consensus_8717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [GCCCCTGTGCTACCAAAAACACGTAGTGGTTAAATTATTACACGTATTTTACGCAAAATAGCTAATGAAGATTATGAATTCGGTCAAACATCAACGAAATTGGAATAATCCTGATTAGAAACGTTAATTAAATTATCAAAATTCGTCATCAATCAATAAATGAGTAGTTAAATGTGGGTGCTTAGTTTCGTTTATATCCATTTATGTCCGTGATATTCCTTAAACTTAGAGTATAGTGCAATGCTCTCTCAGAAATACAAGATAATGATACATTCAATATACCTTTATATCATCACCATTATCATCATCATTTCCATTGAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTAA]

[-] EMBL CD152666             [GCCCCTGTGCTACCAAAAACACGTAGTGGTTAAATTATTACACGTATTTTACGCAAAATAGCTAATGAAGATTATGAATTCGGTCAAACATCAACGAAATTGGAATAATCCTGATTAGAAACGTTAATTAAATTATCAAAATTCGTCATCAATCAATAAATGAGTAGTTAAATGTGGGTGCTTAGTTTCGTTTATATCCATTTATGTCCGTGATATTCCTTAAACTTAGAGTATAGTGCAATGCTCTCTCAGAAATACAAGATAATGATACATTCAATATACCTTTATATCATCACCATTATCATCATCATTTCCATTGAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTAA]




>consensus_8717#1
GCCCCTGTGCTACCAAAAACACGTAGTGGTTAAATTATTACACGTATTTTACGCAAAATA
GCTAATGAAGATTATGAATTCGGTCAAACATCAACGAAATTGGAATAATCCTGATTAGAA
ACGTTAATTAAATTATCAAAATTCGTCATCAATCAATAAATGAGTAGTTAAATGTGGGTG
CTTAGTTTCGTTTATATCCATTTATGTCCGTGATATTCCTTAAACTTAGAGTATAGTGCA
ATGCTCTCTCAGAAATACAAGATAATGATACATTCAATATACCTTTATATCATCACCATT
ATCATCATCATTTCCATTGAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGAT
AACCATTTTTAA

consensusID : consensus_8717#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 151
fasta sequence

                              [TCGCGGCAAGATTCGGCACGAGGAGATAACCATTTTTAATTCATTCTCCTCTCTTGTCATATCACGAAGAAGTGTTTTATCTTCAATGTGTTTATTTATTTATCTATTTATCTCTTCTTATCATACACTATTATCAGTTGCATTATTATTA]

[+] EMBL CD078140             [TCGCGGCAAGATTCGGCACGAGGAGATAACCATTTTTAATTCATTCTCCTCTCTTGTCATATCACGAAGAAGTGTTTTATCTTCAATGTGTTTATTTATTTATCTATTTATCTCTTCTTATCATACACTATTATCAGTTGCATTATTATTA]




>consensus_8717#2
TCGCGGCAAGATTCGGCACGAGGAGATAACCATTTTTAATTCATTCTCCTCTCTTGTCAT
ATCACGAAGAAGTGTTTTATCTTCAATGTGTTTATTTATTTATCTATTTATCTCTTCTTA
TCATACACTATTATCAGTTGCATTATTATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8717#0      AATGTTTATATTGTTTTGTTACATTGAAAGATACTATACCAAATGATCATATGAATGGTT 60
consensus_8717#1      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      TCATGGATGTTGATATAATTACACAAGAAATGAAATCAGAATTATGTCAAATTACGAACA 120
consensus_8717#1      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      AAAATTGGACCATTTGCTACTCCAGATTACATTCAGAGTGCCCCTGTGCTACCAAAAACA 180
consensus_8717#1      ---------------------------------------GCCCCTGTGCTACCAAAAACA 21
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      CGTAGTGGTAAAATTATAAGACGTATTTTACGAAAAATAGCTAATGAAGATTATGAATTC 240
consensus_8717#1      CGTAGTGGTTAAATTATTACACGTATTTTACGCAAAATAGCTAATGAAGATTATGAATTC 81
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      GGTGATACATCAACTTTATTGGATTATTCTTGTTTAGAAACTTTAATTAAATTATCAAAA 300
consensus_8717#1      GGTCAAACATCAACGAAATTGGAATAATCCTGATTAGAAACGTTAATTAAATTATCAAAA 141
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      TCCGTCATAAATCAATAAATGAGTAGTTGAATGTGGTTCTTAAGTTTCCTTAATTTCCTT 360
consensus_8717#1      TTCGTCATCAATCAATAAATGAGTAGTTAAATGTGGGTGCTTAGTTTCGTTTATATCCAT 201
consensus_8717#2      ---------------------------TCGCGGCAAGATTCGGCACGAGGAGATAACCAT 33
                                                 *    *                   **  ** *

consensus_8717#0      TTATC-TCCTTGATCTTCTTTAAACTAAGAGTAAAGTGTATAACAATCACAGAAATAGAA 419
consensus_8717#1      TTATG-TCCGTGATATTCCTTAAACTTAGAGTATAGTGCAATGCTCTCTCAGAAATACAA 260
consensus_8717#2      TTTTAATTCATTCTCCTCTCTTG--TCATATCACGAAGAAGTGTTTTATCTTCAATGTGT 91
                      ** *  * * *  *  **  *    * * *  *    * *      *  *   ***    

consensus_8717#0      GATAATGATACATTCAAT-ATACCTTTATATCAT-TACTATTATCATCATCATTTCCATT 477
consensus_8717#1      GATAATGATACATTCAAT-ATACCTTTATATCAT-CACCATTATCATCATCATTTCCATT 318
consensus_8717#2      T-TATTTATTTATCTATTTATCTCTTCTTATCATACACTATTATCAGTTGCATTATTATT 150
                        ** * **  **  * * **  ***  ******  ** *******    ****   ***

consensus_8717#0      GAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTAATTCATT 537
consensus_8717#1      GAAGTGTATGTTCATTCATTGTTATTACTTTTCTAGTTAGATAACCATTTTTAA------ 372
consensus_8717#2      A----------------------------------------------------------- 151
                                                                                  

consensus_8717#0      CTCCTCTCTTGTCATATCACGAAGAAGTGTTTTATCTTCAATGTGTTTATTTATTTATCT 597
consensus_8717#1      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      ATTTATCTCTTCTTATCATACACTATTATCAGTTGCATTATTATTAACACTGGTGTTCGT 657
consensus_8717#1      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      GTTGCTATAGTTACACAGGACTCTTGTGTGAACTGTGCAACCTTTCATAGGTATTAGTCT 717
consensus_8717#1      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      ATTTCTGCGAACTGCATAACTTACTTTTATTGTTACTATTTATTGTGTACTTATCTATTC 777
consensus_8717#1      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      TGTTAAAATGTCTCCGTTCCCATATAATTACACGCACATACATCGTTAGTTAATACGACT 837
consensus_8717#1      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
                                                                                  

consensus_8717#0      ACTACCACCATGGTTATTATTACTGTTATCCATATTATTGCAATCTTT 885
consensus_8717#1      ------------------------------------------------
consensus_8717#2      ------------------------------------------------