cluster # 8719

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Schistosoma mansoni
cluster # 8719 cluster # 8719 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8719#0 length = 610 sequences # 3

consensus_8719#1 length = 588 sequences # 3
consensus_8719#2 length = 483 sequences # 1

consensusID : consensus_8719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 610
fasta sequence

                              [TAACAGAACAAGTTGATGGATTCCAATAAATGAAACGATTTGAATAAAGAGATGATAACGGTGAATCAATATAATTCAAATCTTCGATTGCATTACTTATTCCATCTTCATTGATTGTAAGATTGACAAGTGTTGGTAGAGTATGTGAATTAACATCTCTTGTACTCTCCATCAGGTGTAAAGGAAAGATGCTACCCATCCATAAATGAACAAGTCTGATTTGAGGCTAAAACGCTCGGCCAACATAGTTAAACGTGGACCAACCATTCTATCAAATTCCACAAAAAATTCCATCGGAATAGGATCAGTACCTT-T-AATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATATCAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAAATATCTTCATAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGCTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCNAAGTAGAATATATAAGTCTACCTTCAAGAANAACGCTGAA]

[-] EMBL CD188015             [TAACAGAACAAGTTGATGGATTCCAATAAATGAAACGATTTGAATAAAGAGATGATAACGGTGAATCAATATAATTCAAATCTTCGATTGCATTACTTATTCCATCTTCATTGATTGTAAGATTGACAAGTGTTGGTAGAGTATGTGAATTAACATCTCTTGTACTCTCCATCAGGTGTAAAGGAAAGATGCTACCCATCCATAAATGAACAAGTCTGATTTGAGGCTAAAACGCTCGGCCAACATAGTTACACGTGGACCAACCATTATATCGAATTCCACATAGAATTCCATCGGAATAGGATCAGTACCTTGTGAATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGATAAATAATTGACAATTGGGTAACTGGGAACCTGGGGCACAAAATAATGGACATATCAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAAATATCTTCATAAATG                                                                                                                                                ]
[+] EMBL CD111883             [                                                                                                                                                                                                                                                      AGTTAAACGTGGACCAACCATTCTATCAAATTCCACAAAAAATTCCATCGGAATAGGATCAGTACCTT T AATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACAT TTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGCTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCNAAGTAGAATATATAAGTCTACCTTCAAGAANAACGCTGAA]
[+] EMBL CD110747             [                                                                                                                                                                                                                                                      AGTTAAACGGGGCCCAACCATTCTATCAAATTCCACAAAAAATTCCTTCGGAATAGGATCAGTACCTT T AATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGAAAATGGGAACCTGGGGCACAAATTAATGG                                                                                                                                                                                                                ]




>consensus_8719#0
TAACAGAACAAGTTGATGGATTCCAATAAATGAAACGATTTGAATAAAGAGATGATAACG
GTGAATCAATATAATTCAAATCTTCGATTGCATTACTTATTCCATCTTCATTGATTGTAA
GATTGACAAGTGTTGGTAGAGTATGTGAATTAACATCTCTTGTACTCTCCATCAGGTGTA
AAGGAAAGATGCTACCCATCCATAAATGAACAAGTCTGATTTGAGGCTAAAACGCTCGGC
CAACATAGTTAAACGTGGACCAACCATTCTATCAAATTCCACAAAAAATTCCATCGGAAT
AGGATCAGTACCTTTAATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAA
TTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATATCAATTTGCTGGG
ACAAATCAGATAAGTCCTTTGGACCAACAAAATATCTTCATAAATGTTTAGATTTTGTTT
TCATAGTAGTCGCATGCGTTAAATCCGGCTGTTCAATAAATAGAAATGAATTTAAATAGT
GATAAATATGACGAACATATGTTAGATCCNAAGTAGAATATATAAGTCTACCTTCAAGAA
NAACGCTGAA

consensusID : consensus_8719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 588
fasta sequence

                              [AGCTAATTTACTTACCTTTAATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATTTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCTTCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGGCCATGAATACGACCAAAATCAGTTGGTTCAATCGATATATATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAAGTACTACAAAAAGTGAATAATAATTTGTAATTTTTCGATTTATTAGAATGTTTCCTAAACCCAACACTTACTCGAGAAAAGAAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTC]

[-] EMBL CD069578             [AGCTAATTTACTTACCTTTAATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAATTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATTTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCTTCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGGCCATGAATACGACCAAAATCAGTTGGTTCAATCGATATAT                                                                                                                                                                                                ]
[-] EMBL BG932507             [                                                                        ggaggAAG GGGAACCTGGGGCACAAATTAATGGACATTTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCTTCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGGCCATGAATACGACCAAAATCAGTTGGTTCAATCG                                                                                                                                                                                                      ]
[+] EMBL CD183270             [                                                                                         GGGGCACAAATTAATGGACATTTAATTTGCTGGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAATAAATAGAAATGAATTTAAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCTTCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGGCCATGAATACGACCAAAATCAGTTGGTTCAATCGATATAAATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAAGTACTACAAAAAGTGAATAATAATTTGTAATTTTTCGATTTATTAGAATGTTTCCTAAACCCAACACTTACTCGAGAAAAGAAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTC]




>consensus_8719#1
AGCTAATTTACTTACCTTTAATAAGTAAACAAAGGACAGCTCTTAAAGCCTGATAGGTAA
TTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATTTAATTTGCT
GGGACAAATCAGATAAGTCCTTTGGACCAACAAGATATCTTCCTAAATGTTTAGATTTTG
TTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAATAAATAGAAATGAATTTAAAT
AGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCTTCAA
AGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGGCCAT
GAATACGACCAAAATCAGTTGGTTCAATCGATATATATTGAATTCCGTTGAAACAATCCA
ATATATCACAGTATTCGAAAAGCATAGTACGTAAGTACTACAAAAAGTGAATAATAATTT
GTAATTTTTCGATTTATTAGAATGTTTCCTAAACCCAACACTTACTCGAGAAAAGAAGTG
CTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTC

consensusID : consensus_8719#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [AGTTGGTTCAATCGATATAAATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAAGTATCGAGAAAAGAAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTCAGTAACTTTTCCATGGAACAGCTCAAAAGTTTCACAAGCAATAGACAAGACTGAATCAATAATGTCATTGTGTAAATAATCATTTTCAACTAGATTATCATCTGTTGAACTCGCAACAGATGGTACTGAAATAACAATTACAATTTGTATGCTGGGAGTTAAACTTTTGAAAAGTCTTTTCGTATTTTTCGTACGTACTGATGTACATGGTGAATTGAAAGAATTTGTAAAAGTTGCAATAGCTTCAGATAATCCAATAGAATTCAGCTTATCATCTAGTGATTTTTCGTTTGGAAAGAAATATAAGATCTTTTTATATTCGTCTCCCTCTTCATCATA]

[+] EMBL CD118551             [AGTTGGTTCAATCGATATAAATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAAGTATCGAGAAAAGAAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTCAGTAACTTTTCCATGGAACAGCTCAAAAGTTTCACAAGCAATAGACAAGACTGAATCAATAATGTCATTGTGTAAATAATCATTTTCAACTAGATTATCATCTGTTGAACTCGCAACAGATGGTACTGAAATAACAATTACAATTTGTATGCTGGGAGTTAAACTTTTGAAAAGTCTTTTCGTATTTTTCGTACGTACTGATGTACATGGTGAATTGAAAGAATTTGTAAAAGTTGCAATAGCTTCAGATAATCCAATAGAATTCAGCTTATCATCTAGTGATTTTTCGTTTGGAAAGAAATATAAGATCTTTTTATATTCGTCTCCCTCTTCATCATA]




>consensus_8719#2
AGTTGGTTCAATCGATATAAATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTC
GAAAAGCATAGTACGTAAGTATCGAGAAAAGAAGTGCTCTAATTTAGCTTTTATTATTTC
ATAATCACACGTTTTAACGATTTCAGTAACTTTTCCATGGAACAGCTCAAAAGTTTCACA
AGCAATAGACAAGACTGAATCAATAATGTCATTGTGTAAATAATCATTTTCAACTAGATT
ATCATCTGTTGAACTCGCAACAGATGGTACTGAAATAACAATTACAATTTGTATGCTGGG
AGTTAAACTTTTGAAAAGTCTTTTCGTATTTTTCGTACGTACTGATGTACATGGTGAATT
GAAAGAATTTGTAAAAGTTGCAATAGCTTCAGATAATCCAATAGAATTCAGCTTATCATC
TAGTGATTTTTCGTTTGGAAAGAAATATAAGATCTTTTTATATTCGTCTCCCTCTTCATC
ATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8719#0      TAACAGAACAAGTTGATGGATTCCAATAAATGAAACGATTTGAATAAAGAGATGATAACG 60
consensus_8719#1      ------------------------------------------------------------
consensus_8719#2      ------------------------------------------------------------
                                                                                  

consensus_8719#0      GTGAATCAATATAATTCAAATCTTCGATTGCATTACTTATTCCATCTTCATTGATTGTAA 120
consensus_8719#1      ------------------------------------------------------------
consensus_8719#2      ------------------------------------------------------------
                                                                                  

consensus_8719#0      GATTGACAAGTGTTGGTAGAGTATGTGAATTAACATCTCTTGTACTCTCCATCAGGTGTA 180
consensus_8719#1      ------------------------------------------------------------
consensus_8719#2      ------------------------------------------------------------
                                                                                  

consensus_8719#0      AAGGAAAGATGCTACCCATCCATAAATGAACAAGTCTGATTTGAGGCTAAAACGCTCGGC 240
consensus_8719#1      ------------------------------------------------------------
consensus_8719#2      ------------------------------------------------------------
                                                                                  

consensus_8719#0      CAACATAGTTAAACGTGGACCAACCATTCTATCAAATTCCACAAAAAATTCCATCGGAAT 300
consensus_8719#1      --------------------------------------------------------AGCT 4
consensus_8719#2      ------------------------------------------AGTTGGTTCAATCGATAT 18
                                                                                 *

consensus_8719#0      AGGATCAGTACCTTT--AATAAGTAAACAAAGGACAGCTCTT--AAAGCCTGATAGGTAA 356
consensus_8719#1      AATTTACTTACCTTT--AATAAGTAAACAAAGGACAGCTCTT--AAAGCCTGATAGGTAA 60
consensus_8719#2      AAATTGAATTCCGTTGAAACAATCCAATATATCACAGTATTCGAAAAGCATAGTACGTAA 78
                      *   *   * ** **  ** **   ** * *  ****   *   ***** *  ** ****

consensus_8719#0      TTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACATATCAATTTGC 416
consensus_8719#1      TTAATTGACAATTGGGTAAGTGGGAACCTGGGGCACAAATTAATGGACAT-TTAATTTGC 119
consensus_8719#2      GTA-TCGAGAA---AAGAAGTGCTCTAATTTAGCTTTTATTATTT--CATAATCACACGT 132
                       ** * ** **      *****      *   **    **** *   ***    *   * 

consensus_8719#0      TGGGACAAATCAGATAAGTCCTT--TGGACCAACAAAATATCTTCATAAATGTTTAGATT 474
consensus_8719#1      TGGGACAAATCAGATAAGTCCTT--TGGACCAACAAGATATCTTCCTAAATGTTTAGATT 177
consensus_8719#2      TTTAACGATTTCAGTAACTTTTCCATGGAACAGCTCAAAAGTTTCACAAGCAAT-AGACA 191
                      *   ** * *    *** *  *   **** ** *   * *  ***  **    * ***  

consensus_8719#0      TTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGCTGTTCAA-TAAATAGAAATGAATTT 533
consensus_8719#1      TTGTTTTCATAGTAGTCGCATGCGTTAAATCCGGTTGTTCAA-TAAATAGAAATGAATTT 236
consensus_8719#2      AGACTGAATCAATAATGTCATTGTGTAAATAATCATTTTCAACTAGATTATCATCTGTTG 251
                          *     * ** *  ***    *****     * ***** ** **    **   ** 

consensus_8719#0      AAATAGTGATAAATATGACGAACATATGTTAGATCCNAAGTAGAATATATAAGTCTACCT 593
consensus_8719#1      AAATAGTGATAAATATGACGAACATATGTTAGATCCAAAGTAGAATATATAAGTCTACCT 296
consensus_8719#2      AACTCGCAACAGATGGTACTGAAATA--ACAATTACAATTTGTATGCTGGGAGTTAAACT 309
                      ** * *  * * **   **  * ***    *  * * *  *  *   *   ***  * **

consensus_8719#0      TCAA-GAANAACGCTGAA------------------------------------------ 610
consensus_8719#1      TCAAAGAAAAACGCTGAATGCTCAGTACAATTAAAACTATATTCAATCCTGTTAAGAAGG 356
consensus_8719#2      TTTG-AAAAGTCTTTTCGTATTTTTCGTACGTACTGATGTACATGGTGAATTGAAAGAAT 368
                      *     **   *  *                                             

consensus_8719#0      ------------------------------------------------------------
consensus_8719#1      CCATGAATACGACCAAAATCAGTTGGTTCAATCGATATATATTGAATTCCGTTGAAACAA 416
consensus_8719#2      TTGTAAAAGTTGCAATAGCT--TCAGATAATCCAATAGAATTCAGCTTATCATCTAGTGA 426
                                                                                  

consensus_8719#0      ------------------------------------------------------------
consensus_8719#1      TCCAATATATC-ACAGTATTCGAAAAGCATAGTACGTAAGTACTACAAAAAGTGAATAAT 475
consensus_8719#2      TTTTTCGTTTGGAAAGAAATATAAGATCTTTTTATATTCGTCTCCCTCTTCATCATA--- 483
                                                                                  

consensus_8719#0      ------------------------------------------------------------
consensus_8719#1      AATTTGTAATTTTTCGATTTATTAGAATGTTTCCTAAACCCAACACTTACTCGAGAAAAG 535
consensus_8719#2      ------------------------------------------------------------
                                                                                  

consensus_8719#0      -----------------------------------------------------
consensus_8719#1      AAGTGCTCTAATTTAGCTTTTATTATTTCATAATCACACGTTTTAACGATTTC 588
consensus_8719#2      -----------------------------------------------------