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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 692 fasta sequence
[TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCTTCAACTCAGTTTCATTCCCTCC-AACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGACATTAGTGCTGTGAAGCGCACNATACATCATAC]
[+] EMBL CD079975 [TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCTTCAACTCAGTTTCATTCCCTCC AACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGACATTAGTGCTGTGAAGCGCACNATACATCATAC]
[+] EMBL CD129529 [ TCA GTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGCTCTTCAACTCAGTTTCATTCCCTCC AACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGTTTATGACATTAGTGCTGTGA ]
[-] EMBL CD188830 [ TCATTCCCTCCAAACCCCGTTTCTAGTCGTTCTTAACTAACTTCTAAGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCTATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTTTGCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAGTAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACT ]
[-] EMBL CD090637 [ TTTTTCTCNCGATGGCATTGTGATAATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAAATAGTGATACTGAAACTAGTAATCATGAGCTTTCTCNCNNCTATTCTTTCTTGACAGGCCTAGGNCTGCGCTAAACCCAGGAGCCAATAAATTTATTTCATTCATGATACTTCTAAATAGATTTAATATTCCTTCCTTAAACTGATTATTTGCAGATTGGTGAATTTTCCTTAGTTCACTGCAATTATTAACTTCGT ]
consensusID : consensus_8720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 670 fasta sequence
[TCCTTCTGGCTGGTCTAGTGGGACAAAAATATTGTCTACATTTAATGATCAGTCATCTTCAGCGCCTCAACTTACTCACCCAACTGGAGCAAATGTCTCCACAGGTCCAACTCCTCCTTCGAACTCTTCAGCATCTTCTTCATGTTACTCTTCGGTGTCACCAGCTGCTCTTTCGTCCACGTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGTAGCGACCATGCTAGGGAATGCACCTTTTTCTTGCTCATCAGGCAATGGCGGTGGACTAGTTGCTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGCCTTGACAACTGAAAGAGCCCAAGCTCGGGAGGAAGTTCATCGACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATA]
[-] EMBL CD165863 [TCCTTCTGGCTGGTCTAGTGGGACAAAAATATTGTCTACATTTAATGATCAGTCATCTTCAGCGCCTCAACTTACTCACCCAACTGGAGCAAATGTCTCCACAGGTCCAACTCCTCCTTCGAACTCTTCAGCATCTTCTTCATGTTACTCTTCGGTGTCACCAGCTGCTCTTTCGTCCACGTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGTAGCGACCATGCTAGGGAATGCACCTTTTTCTTGCTCAT ]
[+] EMBL CD071632 [ CTAGTTTAAGTGATCCAAAATCAGTAGACGCATCACCTGGTGAAGTAGCGACCATGCTAGGGAATGCATCTTTTTCTTGCTCATCAGGCAATGGCGGTGGACTAGTTGCTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGCCTTGACAACTGAAAGAGCCCAAGCTCGGGAGGAAGTTCATCGACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTA ]
[+] EMBL CD166149 [ CTCATTTGCAGTCTGATAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGCCTTGACAACTGAAAGAGACCAAGCTCGGGAGGAAGTTCATCGACGCGACATTTTAATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATGGTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAACGGCATATTGTTCAGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8720#0 TCGGCACGAGGGCCTTCTACCACTGGTGTCCCGGAACGGCA-TATTGTTCAGAAACATGT 59
consensus_8720#1 -----------TCCTTCTG--GCTGGTCTAGTGGGACAAAAATATTGTCT----ACATTT 43
****** ***** * ** ** * ****** **** *
consensus_8720#0 CAGGTTTGAACAC--TGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAACAGAGTCA 117
consensus_8720#1 AATGATCAGTCATCTTCAGCGCCTCAACTTACTCAC--CCAACTGGAGCAAATGTCTCCA 101
* * * ** * * ****** ** ** * * * ** **
consensus_8720#0 CAGCAGCAACAGCAAATGCGTAGCTAGCATAGTATAGACCAAGCGTATATATATATATGC 177
consensus_8720#1 CAGGTCCAACTCCTCCTTCGAACTCTTCAGCATCTTCTTCATGT-TACTCTTCGGTGTCA 160
*** **** * * ** * ** * * ** * ** * * *
consensus_8720#0 TCTTCAACTCAGTTTCATTCCC-TCCAACCCCGTTTCTAGTCGTTCTTAACTAACTTCTA 236
consensus_8720#1 CCAGCTGCTC--TTTCGTCCACGTCTGGTTTAGGTTCTAGTTTAAGTGATCCAAAATCAG 218
* * *** **** * * * ** * ******* * * * ** **
consensus_8720#0 AGAATTAAGTTTTTTAAAGTTTGGCAGCCGTATTAGTGATGGAAGAATCAATTTTACCCT 296
consensus_8720#1 TAGACGCATCACCTGGTGAAGTAGCGACCATGCTAG----GGAA--------TGCACCTT 266
* * * * ** ** * *** **** * *** *
consensus_8720#0 ATTATTATTATTCGCGTCAGAGTCTCTTGGACTGTTGAGCGCCGCTCAATCACCGTTTTT 356
consensus_8720#1 TTTCTTGCTCATCAGGCAATGGCGG--TGGACTA------GTTGCTCATTTGCAGTCTGA 318
** ** * ** * * * ****** * ***** * * ** *
consensus_8720#0 T-GCTTCATAATATGTTTGATAGCGTATAGTCTTTCTTTATCTCACGATGGCATTGTGAT 415
consensus_8720#1 TAGCAATATGATAAAAGCTGAGGAACGCATTCATCGGATATATGCTGATCGACTTATTGC 378
* ** ** *** * * ** * *** * *** * ** *
consensus_8720#0 AATAACGCGTTCTTAGAATTTTATCGTTATTGTAAGTAGAACTAGTGATACTGAAACTAG 475
consensus_8720#1 CTTGACA-ACTGAAAGAGCCCAAGC----TCGGGAGGAAGTTCATCGACGC-GACATTTT 432
* ** * *** * * * * ** * * ** * ** * *
consensus_8720#0 TAATCATGAGCTTTCTCACAACTATTCTTTCTTGACAGACCTAGGACTGCGCTAAACCCA 535
consensus_8720#1 AATCTCTGAACTTCGTCGTGCACATGAAGCTGAGATAAAACGAGTTAAACAACGAACATG 492
* *** *** ** ** ** * * * ** * ***
consensus_8720#0 GGAGCCAATAAATTTATTTCA---TTCATGATACTTCTAAATAGATTTAATATTCCTTCC 592
consensus_8720#1 GTGTCAAGTGTGCTTAAATGAGGCCTTCTACCACTGTTGTCCCGGAACGGCATATTGTTC 552
* * * * *** * * * * *** * * ** * *
consensus_8720#0 TTAAACTGATTA-TTTGCAGATTGGTGAATTTTCCTTAGTTC--ACTGCAATTATTAACT 649
consensus_8720#1 AGAAACATGTCAGTTTGAACACTGGACAGCTCAACATAATCGCGATTGCCGTCGTCGAAC 612
**** * * **** * * *** * * * ** * * *** * * *
consensus_8720#0 TCGTTTATGACATTAGTG------CTGTGA--AGCGCACNATACATCATAC------- 692
consensus_8720#1 AGAGTCACAGCAGCAACAGCAAATTCGTAGCTAGCATAGTATAGACCAAGCGTATATA 670
* * ** * ** *** * *** * ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||