cluster # 8722

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Schistosoma mansoni
cluster # 8722 cluster # 8722 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8722#0 length = 831 sequences # 4
consensus_8722#1 length = 620 sequences # 1

consensus_8722#2 length = 337 sequences # 1
consensus_8722#3 length = 250 sequences # 1

consensusID : consensus_8722#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 831
fasta sequence

                              [AATATAACCGGTCATGTTGATGATATGATTGTTATCTCTGGTTCAGCTGATCGAACTATACGTATATGGTGCCTACGTGGTCTTAACCAAGATATAAGTTTGCCTGACATAATTTTATTAAATTCTTTAAATGAACACAAAGACTGTGTACGCGCCTTAGCACGTATTGATGATTCACGATTTTTATCAGCAAGCAATGATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTATTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAAATCTGTTTCCTGTGGTGAAGATAGAAGTATTCGTGTCTGGCTTTTGCCTTCGGCAGGTGAATGGGCTCCTGAAAAACATTTTAGTTGCTTTCAAACTATTCTATTGCCGTGTCAGTCCGCGTGGTGTGTAGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGACGATGGTTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGACGATAGCATGCCTGGGCTTAAACTACCTTACAATCGTACTGAAGATCCCTGGTTTGCAGCTCATTCTTTTATTCAAAGACATGATTTACCTTCTGGTTATCTGGATACAGTTGCTAATTTCATTATTAAAAACGCAGGACCTCCAATTGATCCAGTTGTCAGCAATGGGGTGCCGAGATCGAT]

[-] EMBL CD148027             [AATATAACCGGTCATGTTGATGATATGATTGTTATCTCTGGTTCAGCTGATCGAACTATACGTATATGGTGCCTACGTGGTCTTAACCAAGATATAAGTTTGCCTGACATAATTTTATTAAATTCTTTAAATGAACACAAAGACTGTGTACGCGCCTTAGCACGTATTGATGATTCACGATTTTTATCAGCAAGCAATGATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTATTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAAATCTGTTTCCTGTGGTGAAGATAGAAGTATTCGTGTCTGGCTTTTGCCTTCGGCAGGTGAATGGGCTCCTGAAAAACATTTTAGTTGCTTTCAAACT                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD161619             [                                                                                                                                                                                                       ATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTACTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAAATTTGTTTCCTGTGGTGAAGATAGAAGTATTCGTGTCTGGCTTTTGCCTTCGGCAGGTGAATGGGCTCCTGAAAAACATTTTAGTTGCTTTCAAACTATTCTATTGCCGTGTCAGTCCGCGTGGTGTGTAGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGACGATGGTTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGACGATAGCATGCCTGGGCTTAAACTACCTTA                                                                                                                                                         ]
[-] EMBL CD062667             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGGAATCGGAAGGACAGATCATGGTTATTAACGACGATGGTTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGACGATAGCATGCCTGGGCTTAAACTACCTTACAATCGTACTGAAGATCCCTGGTTTGCAGCTCATTCTTTTATTCAAAGACATGATTTACCTTCTGGTTATCTGGATACAGTTGCTAATTTCATTATTAAAAACGCAGGACCTCCAATTGATCCAGTTGTCAGCAATGGGGTGCCGAGATCGAT]
[+] EMBL CD182101             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGACGATAGCATGCCTGGGCTTAAACTACCTTACAATCGTACTGAAGATCCCTGGTTTGCAGCTCATTCTTTTATTCAAGGACATGATTTACCTTCTGGTTATCTGGATACAGTTGCTAATTTCATTATTAAAAACGCAGGA                                            ]




>consensus_8722#0
AATATAACCGGTCATGTTGATGATATGATTGTTATCTCTGGTTCAGCTGATCGAACTATA
CGTATATGGTGCCTACGTGGTCTTAACCAAGATATAAGTTTGCCTGACATAATTTTATTA
AATTCTTTAAATGAACACAAAGACTGTGTACGCGCCTTAGCACGTATTGATGATTCACGA
TTTTTATCAGCAAGCAATGATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGT
ATTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTT
CCAAAATCTGTTTCCTGTGGTGAAGATAGAAGTATTCGTGTCTGGCTTTTGCCTTCGGCA
GGTGAATGGGCTCCTGAAAAACATTTTAGTTGCTTTCAAACTATTCTATTGCCGTGTCAG
TCCGCGTGGTGTGTAGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGGGAAATC
GGAAGGACAGATCATGGTTATTAACGACGATGGTTGTTCTGTTTGCTATCAGTGGTCTTC
ACAAGATACTCGGTGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCTAATCGTCA
AGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGACGATAGCATGCC
TGGGCTTAAACTACCTTACAATCGTACTGAAGATCCCTGGTTTGCAGCTCATTCTTTTAT
TCAAAGACATGATTTACCTTCTGGTTATCTGGATACAGTTGCTAATTTCATTATTAAAAA
CGCAGGACCTCCAATTGATCCAGTTGTCAGCAATGGGGTGCCGAGATCGAT

consensusID : consensus_8722#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [TATGTATCAGCTGTGTGTTGTCAAGAATTAGAAAACGAATGTCGTATTCTAACAGGATCACATGATAAACTAATTCGAGGGTATAACTCCATGTCTCCAGAAGCTGTTTTCACATTAGAGGGGCATAAAGATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCGTAATTAGTGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGAGTGGAAAAATGTGATAGTTTTATTAACTGGTTATCATCGGTAACTTCTGAATAGTTTCCCAAAGTGAACTAAATTCATACAATTCAGTGGTGCATCACATTCATGTTTTTTATTGAAAAAGTTCGGGAATTATCTGCGAGTTGATATAATTTTTCCGGTCTTTAAAATGTCAAGTATTTATAATGAATAATAGACTTTCTTTTTCAATCACAAAATGTTGTTAGGAACCCTTTCATTTCAGGTTATCCAGAAAGAGATTATGCTACATTAAAATAGGATAGGGGGATTTAGTGTAGAGAAAGGAGAAACAAAAAAGATGAAAGATCTACTTCAAACATACCAGTCTCATCAAGTAAAAAAGTTGGACTCTTCACAAATAGC]

[+] EMBL CD178607             [TATGTATCAGCTGTGTGTTGTCAAGAATTAGAAAACGAATGTCGTATTCTAACAGGATCACATGATAAACTAATTCGAGGGTATAACTCCATGTCTCCAGAAGCTGTTTTCACATTAGAGGGGCATAAAGATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCGTAATTAGTGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGAGTGGAAAAATGTGATAGTTTTATTAACTGGTTATCATCGGTAACTTCTGAATAGTTTCCCAAAGTGAACTAAATTCATACAATTCAGTGGTGCATCACATTCATGTTTTTTATTGAAAAAGTTCGGGAATTATCTGCGAGTTGATATAATTTTTCCGGTCTTTAAAATGTCAAGTATTTATAATGAATAATAGACTTTCTTTTTCAATCACAAAATGTTGTTAGGAACCCTTTCATTTCAGGTTATCCAGAAAGAGATTATGCTACATTAAAATAGGATAGGGGGATTTAGTGTAGAGAAAGGAGAAACAAAAAAGATGAAAGATCTACTTCAAACATACCAGTCTCATCAAGTAAAAAAGTTGGACTCTTCACAAATAGC]




>consensus_8722#1
TATGTATCAGCTGTGTGTTGTCAAGAATTAGAAAACGAATGTCGTATTCTAACAGGATCA
CATGATAAACTAATTCGAGGGTATAACTCCATGTCTCCAGAAGCTGTTTTCACATTAGAG
GGGCATAAAGATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCGTAATTAGTGGT
TCTTGGGATAAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGAG
TGGAAAAATGTGATAGTTTTATTAACTGGTTATCATCGGTAACTTCTGAATAGTTTCCCA
AAGTGAACTAAATTCATACAATTCAGTGGTGCATCACATTCATGTTTTTTATTGAAAAAG
TTCGGGAATTATCTGCGAGTTGATATAATTTTTCCGGTCTTTAAAATGTCAAGTATTTAT
AATGAATAATAGACTTTCTTTTTCAATCACAAAATGTTGTTAGGAACCCTTTCATTTCAG
GTTATCCAGAAAGAGATTATGCTACATTAAAATAGGATAGGGGGATTTAGTGTAGAGAAA
GGAGAAACAAAAAAGATGAAAGATCTACTTCAAACATACCAGTCTCATCAAGTAAAAAAG
TTGGACTCTTCACAAATAGC

consensusID : consensus_8722#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [AGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGTGATTCAATGATTCGGATATTTTCATGTGATTCAACACGACAAGCATCTTCAGATGTCTTGAAACTTTATGAGACAGAATTAGCCAATTTTAAGGTTACAGTTCCTGATTCTTCTGGAACTGGAGATTTAGTTTTGAACAATTTACCGGGAGTTGGGGCTTTAACGAAACCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGACGATGGGTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTNGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCATATCG]

[+] EMBL CD095530             [AGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGTGATTCAATGATTCGGATATTTTCATGTGATTCAACACGACAAGCATCTTCAGATGTCTTGAAACTTTATGAGACAGAATTAGCCAATTTTAAGGTTACAGTTCCTGATTCTTCTGGAACTGGAGATTTAGTTTTGAACAATTTACCGGGAGTTGGGGCTTTAACGAAACCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGACGATGGGTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTNGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACCTTCATATCG]




>consensus_8722#2
AGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCAGTGATTCAATGATTCGGATATT
TTCATGTGATTCAACACGACAAGCATCTTCAGATGTCTTGAAACTTTATGAGACAGAATT
AGCCAATTTTAAGGTTACAGTTCCTGATTCTTCTGGAACTGGAGATTTAGTTTTGAACAA
TTTACCGGGAGTTGGGGCTTTAACGAAACCAGGGAAATCGGAAGGACAGATCATGGTTAT
TAACGACGATGGGTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTNGGATTA
AAGTTGGTGACGTTGTAGGAAGTCAACCTTCATATCG

consensusID : consensus_8722#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [GATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCATAATTAGGGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGCAAGCAATGATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTCTTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAGTTTGTTTCCTGTGGTGAAGATAGAAG]

[+] EMBL CD165118             [GATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCATAATTAGGGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGCAAGCAATGATGCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTCTTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAGTTTGTTTCCTGTGGTGAAGATAGAAG]




>consensus_8722#3
GATACGGTGTGTGCTTTAGCGGTTGTAAGTCAAAAAACCATAATTAGGGGTTCTTGGGAT
AAATCAGTAAAAATATGGAAAGAAGAAAAGTGTGTTTCTACTCTCACAGCAAGCAATGAT
GCCAGTATAAGAGCTTGGGATGCTACTACGGGCAAATGTCTTGGAGAATTTTATGGGCAC
ACAAATTTTGTTTATGGATTGGCTTGTTCGCCTAATTTTCCAAGTTTGTTTCCTGTGGTG
AAGATAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8722#1      --------------TATGTATCAGCTGTGTGTTGTCAAGAATTAGAAAACGAATGTCGTA 46
consensus_8722#3      ------------------------------------------------------------
consensus_8722#0      AATATAACCGGTCATGTTGATGATATGATTGTTATCTCTGGTTC--AGCTGATCGAACTA 58
consensus_8722#2      ------------------------------------------------------------
                                                                                  

consensus_8722#1      TTCTAACAGGATCACATGATAAACTAATTCGAGGGTATAACTCCATGTCTCCAGAAGCTG 106
consensus_8722#3      ------------------------------------------------------------
consensus_8722#0      TACGTATATGGTGCCTACGTGGTCTTAACC-AAGATATAAGTTTGCCTGACATAATTTTA 117
consensus_8722#2      ----------------------------------------AGCTATGGTACCGAATGGTG 20
                                                                                  

consensus_8722#1      TTTT-CACATTAGAGG-GGCATAAAGATACGGTGTGTGCTTTAGCGGTTGTAAGTCAA-- 162
consensus_8722#3      -------------------------GATACGGTGTGTGCTTTAGCGGTTGTAAGTCAA-- 33
consensus_8722#0      TTAAATTCTTTAAATG-AACACAAAGACTGTGTACGCGCCTTAGCACGTATTGATGATTC 176
consensus_8722#2      ATATTGTTGTTGGAGGCAGTGATTCAATGATTCGGATATTTTCATGTGATTCAACACG-- 78
                                                *             **        *         

consensus_8722#1      AAAACCGTAATTAGTGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGA------AGAA 216
consensus_8722#3      AAAACCATAATTAGGGGTTCTTGGGATAAATCAGTAAAAATATGGAAAGA------AGAA 87
consensus_8722#0      ACGATTTTTATCAGCAAGCAATGATGCCAGT--ATAAGAGCTTGGGATGCTACTACGGGC 234
consensus_8722#2      ACAAGCATCTTCAGATGTCTTGAAACTTTATGAGACAGAATTAGCCAATT------TTAA 132
                      *  *   *  * **                *     * *    *  *             

consensus_8722#1      AAGTGT-GTTTCTACTCTCACAGAGTGGAAAAATGTGATAGTTTTATTAACTGGTTATCA 275
consensus_8722#3      AAGTGT-GTTTCTACTCTCACAGCAAGCAATGATGCCAG---TATAAGAGCTTGGGAT-- 141
consensus_8722#0      AAATGT-ATTGGAGAATTTTATGGGCACACAAATTTTGTTTATGGATTGGCTTGTTCGCC 293
consensus_8722#2      GGTTACAGTTCCTGATTCTTCTGGAACTGGAGATTTAGT--TTTGAACAATTTACCGGGA 190
                         *    **            *         **        *  *     *        

consensus_8722#1      TCGGTAACTTCTGAATAGTTTCCCAAAGTGAAC-TAAATTCATACAA--TTCAGTGGTGC 332
consensus_8722#3      ---GCTACTACGGGCAAATGTCTTGGAGAATTT-TATGGGCACACAAATTTTGTTTATGG 197
consensus_8722#0      T-AATTTTCCAAAATCTGTTTCCTGTGGTGAAGATAGAAGTATTCGTGTCTGGCTTTTGC 352
consensus_8722#2      GTTGGGGCTTTAACGAAA----CCAGGGAAATCGGAAGGACAGATCATGGTTATTAACGA 246
                                                 *       *     *        *   *   * 

consensus_8722#1      ATCACATTCATG--TTTTTTATTGAAAAAGTTCGGGAATTATCTGCGA-GTTGATATAAT 389
consensus_8722#3      ATTG-GCTTGTT--CGCCTAATTTTCCAAGTTTG----TTTCCTGTGGTGAAGATAGAAG 250
consensus_8722#0      CTTCGGCAGGTGAATGGGCTCCTGAAAAACATTTTAGTTGCTTTCAAACTATTCTATTGC 412
consensus_8722#2      CGATGGGTGTTCTGTTTGCTATCAGTGGTCTTCACAAGATACTCGGTN---GGATTAAAG 303
                                *                    *                      *     

consensus_8722#1      TTTTCCGGTCTTTAAAATGTCAAGTATTTATAATGAATAATAGACTTTCTTTTTCAATCA 449
consensus_8722#3      ------------------------------------------------------------
consensus_8722#0      CGTGTCAGTCCGCGTGGTGTGTAGCTATGGTACCGAATGGTGATATTGTTGTTGGAGGCA 472
consensus_8722#2      TTGGTGACGTTGTAGGAAGTCAA-CCTTCATATCG------------------------- 337
                                                                                  

consensus_8722#1      CAAAATGTTGTTAGGAACCCTTTCATTTCAGGTTATCCAGAAAGAGATTATGCTACATTA 509
consensus_8722#3      ------------------------------------------------------------
consensus_8722#0      GGGAA-ATCGGAAGGA--CAGATCATGGTTATTAACGACGATGGTTGTTCTGTT-TGCTA 528
consensus_8722#2      ------------------------------------------------------------
                                                                                  

consensus_8722#1      AAATAGGATAGGGGGATTTAGTGTAGAGAAAGGAGAAACAAAAAAGATGAAAGATCTACT 569
consensus_8722#3      ------------------------------------------------------------
consensus_8722#0      TCAGTGGTCTTCACAAGATACTCGGTGGATTAAAGTTGGTGACGTTGTAGGAAGTCAACC 588
consensus_8722#2      ------------------------------------------------------------
                                                                                  

consensus_8722#1      TCAAACATACCAGTCTCATCAAGTAAAAAAGTTGGACTCTTCACAAATAGC--------- 620
consensus_8722#3      ------------------------------------------------------------
consensus_8722#0      TTCTAATCGTCAAGTCCATGAAGGCAAAGAATACGATTTTGTATTTACGGTTGATATTGA 648
consensus_8722#2      ------------------------------------------------------------
                                                                                  

consensus_8722#1      ------------------------------------------------------------
consensus_8722#3      ------------------------------------------------------------
consensus_8722#0      CGATAGCATGCCTGGGCTTAAACTACCTTACAATCGTACTGAAGATCCCTGGTTTGCAGC 708
consensus_8722#2      ------------------------------------------------------------
                                                                                  

consensus_8722#1      ------------------------------------------------------------
consensus_8722#3      ------------------------------------------------------------
consensus_8722#0      TCATTCTTTTATTCAAAGACATGATTTACCTTCTGGTTATCTGGATACAGTTGCTAATTT 768
consensus_8722#2      ------------------------------------------------------------
                                                                                  

consensus_8722#1      ------------------------------------------------------------
consensus_8722#3      ------------------------------------------------------------
consensus_8722#0      CATTATTAAAAACGCAGGACCTCCAATTGATCCAGTTGTCAGCAATGGGGTGCCGAGATC 828
consensus_8722#2      ------------------------------------------------------------
                                                                                  

consensus_8722#1      ---
consensus_8722#3      ---
consensus_8722#0      GAT 831
consensus_8722#2      ---