cluster # 8723

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Schistosoma mansoni
cluster # 8723 cluster # 8723 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8723#0 length = 482 sequences # 6

consensus_8723#1 length = 232 sequences # 1

consensusID : consensus_8723#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 482
fasta sequence

                              [ACCGCCCTTTTTTACAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA-AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG-GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT-AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA-AATAGACGTG-AC-ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCCGTTT]

[+] EMBL CD165927             [ACCGCCCTTTTTTACAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGACCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAAGAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCGTGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCACATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTACAATTCACAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGACGGTACACTAGACGTGCACGATTAAAAGCAACGCACTATGACCTTCGATTTGAAAT T ACCGTGACAAAATCTCATGATGAAGTCAAATGGTTTCAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCC    ]
[+] EMBL CD165897             [              CAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGACTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTGTGACCTTCGATTTGAAATATAACCGTGACGAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCCGTTT]
[-] EMBL CD165949             [              CAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCCG   ]
[+] EMBL CD165939             [              CAGACCAAAAGGAAGAGTACGATCTGTGATTCAATAAACGGTATGATTTTCAACTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTNATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCC    ]
[+] EMBL CD165890             [              CAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGATTTTCAATTCAGTAACTACCGATCTGTCAGAACAACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCT                                                                        ]
[-] EMBL CD165916             [                                                                                     GTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAA AAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCG GTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAGTATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATT AAAGATGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTA AATAGACGTG AC ATTAAAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGTTCAAATGGTTTAAATGGTTGTAGATGGAGCAAAAGGAACTTTCACTCAACGGGCTTCCG   ]




>consensus_8723#0
ACCGCCCTTTTTTACAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGA
TTTTCAATTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTT
TTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATC
TTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAA
ATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATTAAAGA
TGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTAAATAGACGTGACATTA
AAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGT
TCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCCGT
TT

consensusID : consensus_8723#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [CCTTTTTTACAGACCAAAAGGAAGAGTACGATCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCAC]

[-] EMBL CD143808             [CCTTTTTTACAGACCAAAAGGAAGAGTACGATCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTTTTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATCTTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCAC]




>consensus_8723#1
CCTTTTTTACAGACCAAAAGGAAGAGTACGATCGATCTGTCAGAACGACCTCAATAAGGT
CTTTTTCTAATTTTTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCC
AACACAGCCAATCTTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCAT
ACAAGTCTTTCAAATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8723#0      ACCGCCCTTTTTTACAGACCAAAAGGAAGAGTACGATCTATGATTCAATAAACGGTATGA 60
consensus_8723#1      -----CCTTTTTTACAGACCAAAAGGAAGAGTACGATC---------------------- 33
                           *********************************                      

consensus_8723#0      TTTTCAATTCAGTAACTACCGATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTT 120
consensus_8723#1      --------------------GATCTGTCAGAACGACCTCAATAAGGTCTTTTTCTAATTT 73
                                          ****************************************

consensus_8723#0      TTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATC 180
consensus_8723#1      TTCACCAATTCTGGACAAAAACGCAGATAGTTCGGAATCACGATTCCAACACAGCCAATC 133
                      ************************************************************

consensus_8723#0      TTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAA 240
consensus_8723#1      TTTTCTCGGTCGATAAATCTCTGGACCTTGAGCAAGTCTTCTGTCATACAAGTCTTTCAA 193
                      ************************************************************

consensus_8723#0      ATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCACACCTAATATTAAAATTAAAGA 300
consensus_8723#1      ATATGGACGAATAAACCTAGGTCTTCTGCCATGGCGCAC--------------------- 232
                      ***************************************                     

consensus_8723#0      TGAATAACTACAACATACAAGATATCAGTACGGGAGAGAGGGTAAATAGACGTGACATTA 360
consensus_8723#1      ------------------------------------------------------------
                                                                                  

consensus_8723#0      AAAGCAACGCACTATGACCTTCGATTTGAAATATAACCGTGACAAAATCTCATGATGAGT 420
consensus_8723#1      ------------------------------------------------------------
                                                                                  

consensus_8723#0      TCAAATGGTTTAAATGGTTGTAGATGGAACAAAAGGAACTTTCACTCAACGGGCTTCCGT 480
consensus_8723#1      ------------------------------------------------------------
                                                                                  

consensus_8723#0      TT 482
consensus_8723#1      --