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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1165 fasta sequence
[CCTCGAGGCCAANATTTCGGCACGAGGTGAACCTGAACTGAAGTATGATGAAAGTTCAATTAATTCCGATTCTAATTTATCTTTATCTTCACAACTTGGAGATGATCCCGTAATTGTCAGTCTTTCTAAATGCAAACCAAGCGTCAACGATTCAGAAAAAGATTTAAAATTAAATGAGCTTAATAACAATGCTAATCCAAATGATGAAATAAGTACCAACTTATATCTTGATCCCGAATGGTTATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCTTCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGCTTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGCAATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTANAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTNTGTATCANATACTAATCAATCTAGTCATAATCCAATTAAAAATACCCAATCTTTATGATAGTGGNTGTAAGTCANAACCCTGAAGAATTGGTATTAGATGATATTGAAAGATATGATGATGAAATTCCCATGAGTTCACTATGTAATGTCCTCACATGACGCTGTTATCTCAGTCACAATTAATAATCGAGCAGGTCATTCTCACTTTGCCTGATCTATATTATCACTAACATATTATTTATTTTACAGGTGTTTTTACTTTCTGAAGATCTTTTGAGATCACTGNATGCTATTTAAGTACATTGTACTAGCTATACATACGGCTGTGACG]
[+] EMBL CD081474 [CCTCGAGGCCAANATTTCGGCACGAGGTGAACCTGAACTGAAGTATGATGAAAGTTCAATTAATTCCGATTCTAATTTATCTTTATCTTCACAACTTGGAGATGATCCCGTAATTGTCAGTCTTTCTAAATGCAAACCAAGCGTCAACGATTCAGAAAAAGATTTAAAATTAAATGAGCTTAATAACAATGCTAATCCAAATGATGAAATAAGTACCAACTTATATCTTGATCCCGAATGGTTATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCTTCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGCTTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGCAATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTANAAAGGATGAAGAGGAGGATGACGATGAGGTT ]
[+] EMBL CD081831 [ CGAATGGTTATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCTTCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGCTTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGCAATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTNTGTATCANATACTAATCAATCTAGTCATAATCCAATTAAAAATACCCAATCTTTATGATAGTGGNTGTAAGTCANAACCCTGAAGAATTGGTATTAGATGATATTGAAAGATATGATGATGAAATTCCCATGAGTTCACTATGTAATGTCCTCACATGACGCTGTTATCTCAGTCACAATTAATAATCGAGCAGGTCATTCTCACTTTGCCTGATCTATATTATCACTAACATATTATTTATTTTACAGGTGTTTTTACTTTCTGAAGATCTTTTGAGATCACTGNATGCTATTTAAGTACATTGTACTAGCTATACATACGGCTGTGACG]
[-] EMBL CD159927 [ TATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCTTCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGCTTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGCAATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTGATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCAC ]
consensusID : consensus_8724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence
[GAGCCATATTCGGCACGAGCGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATCAAATACTAATCAATCTAGTCATAATCCAATTAAAAATACAAATCTTTATGATAGTGTTGTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTTCCCAATGAGTTTCACTCTGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACAAATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTTAATCGACAAAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTTTTCTGATAAGTAATTTCATATTTTGATGGAGTTCCAACTTGTAAATGTCTTTTAATCTCTAAATGTAACAGTTTTGTATACCTTAAAGCTAAAATCTCAACCATATTCACTGTCTTATGTTGTAACTGGTACAAATATATT]
[+] EMBL CD081752 [GAGCCATATTCGGCACGAGCGTCCACACCAATTAGTTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATCAAATACTAATCAATCTAGTCATAATCCAATTAAAAATACAAATCTTTATGATAGTGTTGTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTTCCCAATGAGTTTCACTCTGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACAAATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTTAATCGACAAAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTTTTCTGATAAGTAATTTCATATTTTGATGGAGTTCCAACTTGTAAATGTCTTTTAATCTCTAAATGTAACAGTTTTGTATACCTTANAGCTAAAATCTCAACCATATTCACTGTCTTATGTTGTAACTGGTACAAATATAT ]
[-] EMBL CD075486 [ TTTTTCCAACCCACAAACAGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCAATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGATGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATCAAATACTAATCAATCTAGTCATAATCCAATTAAAAATACAAATCTTTATGATAGTGTTGTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTTCCCAATGAGTTTCACTCTGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACAAATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTTAATCGACAAAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTTTTCTGATAAGTAATTTCATATTTTGATGGAGTTCCAACTTGTAAATGTCTTTTAATCTCTAAATGTAACAGTTATGTATACCTTAAAGCTAAAATCTCAACCATATTCACTGTCTTATGTTGTAGCTGGTACAAATATAa ]
[-] EMBL CD075298 [ GAAAAATGATGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTCAGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATCAAATACTAATCAATCTAGTCATAATCCAATTAAAAATACAAATCTTTATGATAGTGTTGTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTTCCCAATGAGTTTCACTATGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACAGATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTTAATCGACATAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTTTTCTGATAAGTAATTTCATATTTTGATGGAGTTCCAACTTGTAAATGTCTTTTAATCTCTAAATGTAACAGTTTTGTATACCTTAAAGCTAAAATCTCAACCATATTCACTGTCTTATGTTGTAACTGGTACAAATATATT]
consensusID : consensus_8724#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence
[AATATTTTTGTCCCAGTTCCAACATAAAACAGGGAATATGGTTGAAATTTTACCTTTAAGGTATACAAAACTGTTACATTTAAAAATTAAAAAACATTTACAAGTTGGAACTCCATCAAAATATGAAATTCCTTATCAAAAAAAGTTAAAAAAAACCCCCCTGTTTATAATTTAA]
[+] EMBL CD075553 [AATATTTTTGTCCCAGTTCCAACATAAAACAGGGAATATGGTTGAAATTTTACCTTTAAGGTATACAAAACTGTTACATTTAAAAATTAAAAAACATTTACAAGTTGGAACTCCATCAAAATATGAAATTCCTTATCAAAAAAAGTTAAAAAAAACCCCCCTGTTTATAATTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8724#0 CCTCGAGGCCAANATTTCGGCACGAGGTGAACCTGAACTGAAGTATGATGAAAGTTCAAT 60
consensus_8724#1 ------------------------------------------------------------
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 TAATTCCGATTCTAATTTATCTTTATCTTCACAACTTGGAGATGATCCCGTAATTGTCAG 120
consensus_8724#1 ------------------------------------------------------------
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 TCTTTCTAAATGCAAACCAAGCGTCAACGATTCAGAAAAAGATTTAAAATTAAATGAGCT 180
consensus_8724#1 ------------------------------------------------------------
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 TAATAACAATGCTAATCCAAATGATGAAATAAGTACCAACTTATATCTTGATCCCGAATG 240
consensus_8724#1 ------------------------------------------------------------
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 GTTATCTATTCTGAGGTCAACAAATCATTTAATGTCTACTAGCAAAGTTCCCTGTATTCT 300
consensus_8724#1 ------------------------------------------------------------
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 TCCAGAAAAAGAAACAAGCGAACGTTGTGATTTTTCCGCTACCGATGATGAAATTCAGGC 360
consensus_8724#1 ------------------------------------------------------------
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 TTTGTACGACCCTTTTGGTGGAGATTTTCAAGTTCCTGACAACTTTGAACGTACTGCTGC 420
consensus_8724#1 ------------------------------------------------------------
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 AATTTACAAACCGAATGAAACTGATCAAATGAATACAAAAACTACGTCCACACCAATTAG 480
consensus_8724#1 -------------------------GAGCCATATTCGGCACGAGCGTCCACACCAATTAG 35
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 TTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAAC 540
consensus_8724#1 TTTGGTTCAACAAGCAAATGCCTTAAATAAAGAACAACAACTTTTTTCCAACCCACAAAC 95
consensus_8724#2 -----------------------------------AATATTTTTGTCCCAGTTCCAACAT 25
** * *** * *** * * *
consensus_8724#0 AGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCA 600
consensus_8724#1 AGAACTAATTTGTGCTATGCTTGATTTAATAAATCCTAATGCACTTTTTCTGGGCAAGCA 155
consensus_8724#2 AAAACAG----GGAATATGGTTG-------AAATTTTA-------CCTTTAAGGTATACA 67
* *** * **** *** **** ** ** ** * **
consensus_8724#0 ATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTANAAAGGATGAAGAGGAGGA 660
consensus_8724#1 ATCATACAGTTTGCTAGAATTATCAGCACAGTTACAATCTAAAAAGGATGAAGAGGAGGA 215
consensus_8724#2 AAACTGTTACATTTAAAAATTAAAAA-ACATTTACAAGTTGGAA---CTCCATCAAAATA 123
* * * * ***** * *** ****** * ** * * * *
consensus_8724#0 TGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGA 720
consensus_8724#1 TGACGATGAGGTTGAGGGAAATCCAGAAGAAAATATTTGTGAAGACGATGTGAAAAATGA 275
consensus_8724#2 TGAAATTCCTTATCAAAAAAAGTTA-AAAAAAACCCCCCTGTTTATAATTTAA------- 175
*** * * * *** * ** **** ** * ** * *
consensus_8724#0 TGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTC 780
consensus_8724#1 TGAAAACCAACTTGATGTCAATGAATATCCATTAGATGTAAACACTAGCTGGATCGCTTC 335
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 AGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTNTGTATC 840
consensus_8724#1 AGACTCATTCGTCAAAGAGAGTTTTACAGAGTATGATCCGATGAATAGCAGTTTTGTATC 395
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 ANATACTAATCAATCTAGTCATAATCCAATTAAAAATACCCAATCTTTATGATAGTGGNT 900
consensus_8724#1 AAATACTAATCAATCTAGTCATAATCCAATTAAAAATACA-AATCTTTATGATAGTG-TT 453
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 GTAAGTCANAACCCTGAAGAATTGGTATTAGATGATATTGAAAGATATGATGATGAAATT 960
consensus_8724#1 GTAAGTCAAAACCCTGAAGAATTGGTATTAGATGATATTGAAGATAATGATGATGAATTT 513
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 CCCA-TGAGTT-CACTATGTAA---TGTCCTCACATGACGCT-GTTAT-CTCAGT-CACA 1012
consensus_8724#1 CCCAATGAGTTTCACTCTGTAAATGTCTCTCAACATGACGCTAGTTATTCTCAGTTCACA 573
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 ATT---AATAATC--GAGCAGGT---CATTC-TCA--CTTTGCCTGATC------TATAT 1055
consensus_8724#1 AATTTAAATAAATCAGAGCAAGTGTACATTCCTCAACTTTTGCCTGATTCCTAATTATTT 633
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 TATCACTAACATA--TTATTTATTTTACAGGTGTTTT------TACTTTCTGAAGATCTT 1107
consensus_8724#1 AATCGACAAAATACATTATTTTATTTTTAAATTATATACAGGGTGTTTTTTTTTAACTTT 693
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 TTGAGATCACTGNATGC-TATTTAAGTACATTGTACTAGCTATACATACGGCTGTGACG- 1165
consensus_8724#1 TTCTGATAAGTAATTTCATATTTTGATGGA--GTTCCAACT-TGTAAATGTCTTTTAATC 750
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 ------------------------------------------------------------
consensus_8724#1 TCTAAATGTAACAGTTTTGTATACCTTAAAGCTAAAATCTCAACCATATTCACTGTCTTA 810
consensus_8724#2 ------------------------------------------------------------
consensus_8724#0 ------------------------
consensus_8724#1 TGTTGTAACTGGTACAAATATATT 834
consensus_8724#2 ------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||