These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 824 fasta sequence [CCAGGCCANAATTTGGCACGAGGATCACTCTGTATGTACTTTTCTTTTCTAACATATGAAAATGAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAATAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGAAATTTGTGATGTAATAACTCG-TTCACCTAAAATGATTGATAT-TACATCTAAAATTGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT-AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTGGCACGTTTAGCTGGTATACAAGCTGCTAAACAAGCTTCTAATATTATACCATTATGTCATCAAGTGCCATTATCATATATTTCAGTGGATATTGGTTACAGATTAGGCAAAATTCATATACAATCACAAGTAAAAGCAGTTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCTGTTGCTGCACTAACGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATTGAGAAAATTGAACTATTAGAAAAACTTGGTGGGATCCAAAGGTNCTACTTANNACTNGNTGCATCGAANTAAGAANAGACTTGATATCCAGCTTGCTTAAAATCAT] [+] EMBL CD080836 [CCAGGCCANAATTTGGCACGAGGATCACTCTGTATGTACTTTTCTTTTCTAACATATGAAAATGAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAATAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGAAATTTGTGATGTAATAACTCG TTCACCTAAAATGATTGATAT TACATCTAAAATTGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTGGCACGTTTAGCTGGTATACAAGCTGCTAAACAAGCTTCTAATATTATACCATTATGTCATCAAGTGCCATTATCATATATTTCAGTGGATATTGGTTACAGATTAGGCAAAATTCATATACAATCACAAGTAAAAGCAGTTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCTGTTGCTGCACTAACGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATTGAGAAAATTGAACTATTAGAAAAACTTGGTGGGATCCAAAGGTNCTACTTANNACTNGNTGCATCGAANTAAGAANAGACTTGATATCCAGCTTGCTTAAAATCAT] [+] EMBL CD198683 [ ataccagcTATGAAAATGAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAATAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGAAATTTGTGATGTAATAACTCG TTCACCTAAAATGATTGATAT TACATCTAAAATTGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGANAGTCATATTGATGATAATNAATAC AATGAATTA ] [+] EMBL CD070257 [ GAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAATAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGAAATTTGTGATGTAATAACTCG TTCACCTAAAATGATTGATAT TACATCTAAAATTGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATNGAAGTCATATTGATGATAAA TATACNAATGAATTATATGAACTATNCACACC AAAGGTGATGTATTTACAGT ] [-] EMBL CD070426 [ ACTCGTTTCACCTAAAATGATTGATAT TACATCTAAAATTGTAAATGGANATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATCATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTG ] [-] EMBL CD070441 [ TGATATANNCATCTAAATNNGTAAATGGANATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTG ] [-] EMBL CD070461 [ TGATA TACATCTAAAA TGTAAATGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATTTATGTGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAATAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAAT AATACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTG ] consensusID : consensus_8726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [AGTGCCATTATAACATATTTCAGGGGGATATGGGTTACAGATTAGGCAAAAATCATATACAATCACAAGGTAAAAGCAGGTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCTGTTGCTGCACTAAGGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATTGAGAAAATTGAACTATTAGAAAAACTTGGTGGATCCAAAGGTTCCTACTTAAAACTTGGTGCATCGAAAATATAGAGAGAG] [-] EMBL SMAA69924 [AGTGCCATTATAACATATTTCAGGGGGATATGGGTTACAGATTAGGCAAAAATCATATACAATCACAAGGTAAAAGCAGGTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCTGTTGCTGCACTAAGGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATTGAGAAAATTGAACTATTAGAAAAACTTGGTGGATCCAAAGGTTCCTACTTAAAACTTGGTGCATCGAAAATATAGAGAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8726#0 CCAGGCCANAATTTGGCACGAGGATCACTCTGTATGTACTTTTCTTTTCTAACATATGAA 60 consensus_8726#1 ------------------------------------------------------------ consensus_8726#0 AATGAGCCATCATACTTTGATCAATTGTTTTAAACGTGCAATTGAACCAAATTTTTCAAA 120 consensus_8726#1 ------------------------------------------------------------ consensus_8726#0 TAGTTTAAAGAAATCATCAACACAATCAAGTATGACAACAGAACAACAAAATCCAATTGA 180 consensus_8726#1 ------------------------------------------------------------ consensus_8726#0 AATTTGTGATGTAATAACTCGTTCACCTAAAATGATTGATATTACATCTAAAATTGTAAA 240 consensus_8726#1 ------------------------------------------------------------ consensus_8726#0 TGGAAATAGTCAGAAACAAAATATTATGACAACAATTAGATCAGCTAAAGCACAAGTATT 300 consensus_8726#1 ------------------------------------------------------------ consensus_8726#0 TATATGTATTGATGATTATATTAAACAATTTATTCATAATCAATGTTTGATTATAGATAA 360 consensus_8726#1 ------------------------------------------------------------ consensus_8726#0 TAATTCAGATAAGATTATCCATGATAATGATAATAATGAAAGTCATATTGATGATAATAA 420 consensus_8726#1 ------------------------------------------------------------ consensus_8726#0 TACAAATGAATTATATGAACTATTAACACCAAAAGGTGATGTATTTACAGTGGCACGTTT 480 consensus_8726#1 ------------------------------------------------------------ consensus_8726#0 AGCTGGTATACAAGCTGCTAAACAAGCTTCTAATATTATACCATTATGTCATCAAGTGCC 540 consensus_8726#1 ------------------------------------------------------AGTGCC 6 ****** consensus_8726#0 ATTATCATATATTTCAGTGG-ATATTGGTTACAGATTAGGCAAAATTCATATACAATCAC 599 consensus_8726#1 ATTATAACATATTTCAGGGGGATATGGGTTACAGATTAGGCAAAAATCATATACAATCAC 66 ***** * ********* ** **** ******************* ************** consensus_8726#0 AAG-TAAAAGCAGTTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCT 658 consensus_8726#1 AAGGTAAAAGCAGGTGGTCAGTCTACAGGTGTAGAAATGGAAGCATTAACAGCTGTTTCT 126 *** ********* ********************************************** consensus_8726#0 GTTGCTGCACTAACGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATT 718 consensus_8726#1 GTTGCTGCACTAAGGGTTTACGATATGCTAAAACCGTTACAAAAAGGGCCAATTATTATT 186 ************* ********************************************** consensus_8726#0 GAGAAAATTGAACTATTAGAAAAACTTGGTGGGATCCAAAGGTNCTACTTANNACTNGNT 778 consensus_8726#1 GAGAAAATTGAACTATTAGAAAAACTTGGTGGATCCAAAGGTTCCTACTTAAAACTTGGT 246 ******************************** * ** * * ******* *** * * consensus_8726#0 GCATCGAAN-TAAGAANAGACTTGATATCCAGCTTGCTTAAAATCAT 824 consensus_8726#1 GCATCGAAAATATAGAGAGAG-------------------------- 267 ******** ** * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||