cluster # 8734

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Schistosoma mansoni
cluster # 8734 cluster # 8734 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8734#0 length = 639 sequences # 5

consensus_8734#1 length = 429 sequences # 2

consensusID : consensus_8734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 639
fasta sequence

                              [TCGGCACGAGGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATAAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAAC-TTTGAAAAGT-CCAAAGTGAAGGATCTTAAGAAGATCATAGAGAGA-TGGGGGCTAGAATGTCGTGGTTGTACTG-AAAA-AGAGATTATATCAGCTTGATTAAAAGT-ATATGCACAAGCATGATCCTGAAGCAGCAGCTTATCTTCAAGCAAGGGGGGAGCTTTGAATTTTTAATACATTTCATTGTACAAAGTTATTTATGAGTTTTTAGTTTTTATAAGTCTGTTCTTTTTAATGAAATATAATT]

[+] EMBL CD078020             [TCGGCACGAGGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATAAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTT AAACATCCGCGGCGAATATT                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL SMT14555             [                              GTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGANGAAATATGACCCATCAAATTGCGAAGTGTGCATAANGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTTGAAAAGTCCCAAAGTGGAGGATCTTAAGAAGTCCATAGAGAGATTGGGGGCTAGAATGTCGTGGTTGTACTG AAA                                                                                                                                                                          ]
[+] EMBL CD140030             [                                                                                                                                                                                                GTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAAC TTTGAAAAGT CCAAAGTGAAGGATCTTAAGAAGATCATAGAGAGA TGNGGGCTAGAATGTCGTGGTTGTACTG AAAA AGAGATTATATCAGCTTGATTAAAAGT ATATGCACAAGCATGATCCTGAAGCAGCAGCTTATCTTCAAGCAAGG                                                                                             ]
[-] EMBL CD113939             [                                                                                                                                                                                                            TTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAAC TTTGAAAAGT CCAAAGTGAAGGATCTTAAGAAGATCATAGAGAGA TGGGGGCCAGAATGTCGTGGTTGTACTGAAAAA AGCGATTATATCAGCTTGATTAAAAGTAATATGCACAAGCATGATCCTGAAGCAGCAG                                                                                                              ]
[-] EMBL SMT14554             [                                                                                                                                                                                                                                                                                                                                   AAGCTGTTCAAAATAGACTCTCAAATCTGTGNTCTTAGATACGANAAAGTCATAGATTTTAAGGAGTTCAAC TTTGAAAAGT CCAAAGTGAAGGNTCTTAAGAAGATCATAGAGAGA TGGGGGCTAGAATGTCGTGGTTGTACTG AAAANAGAGATTATATCAGCTTGATTAAAAGTAATATGCACAAGCATGANCCTGAAGCAGCAGCTTATCTTCAAGCAAGGGGGGAGCTTTGAATTTTTAATACATTTCATTGTACAAAGTTATTTATGAGTTTTTAGTTTTTATAAGTCTGTTCTTTTTAATGAAATATAATT]




>consensus_8734#0
TCGGCACGAGGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACAACCTCTTTAAATA
TTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATAAAGTTCGTCGGCT
CCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCAT
TCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCG
GCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGA
TGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTA
GATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTCCAAAGTGAAGGATC
TTAAGAAGATCATAGAGAGATGGGGGCTAGAATGTCGTGGTTGTACTGAAAAAGAGATTA
TATCAGCTTGATTAAAAGTATATGCACAAGCATGATCCTGAAGCAGCAGCTTATCTTCAA
GCAAGGGGGGAGCTTTGAATTTTTAATACATTTCATTGTACAAAGTTATTTATGAGTTTT
TAGTTTTTATAAGTCTGTTCTTTTTAATGAAATATAATT

consensusID : consensus_8734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 429
fasta sequence

                              [GAGGTTGATTACTGTTTCTACATGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATAAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTCCAAAGTGAAG]

[+] EMBL CD084018             [GAGGTTGATTACTGTTTCTACATGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACAACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATAAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAAATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGTTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTCCAAAGTGAAG]
[+] EMBL SM3911               [                                                                                                                                                                                                                                                                                                 TAGTTGACCCAATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAAAT                                                                   ]




>consensus_8734#1
GAGGTTGATTACTGTTTCTACATGGATATGTCTGTCATTTTCTGTATTCTGATTCTTACA
ACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCATA
AAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAAA
ATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTGT
TATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCCA
ATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCAA
ATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTCC
AAAGTGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8734#0      --------------TCGGCACGAGGGATATGTCTGTCATTTTCTGTATTCTGATTCTTAC 46
consensus_8734#1      GAGGTTGATTACTGTTTCTAC-ATGGATATGTCTGTCATTTTCTGTATTCTGATTCTTAC 59
                                    *    ** * ************************************

consensus_8734#0      AACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCAT 106
consensus_8734#1      AACCTCTTTAAATATTATACATACGAAGAAATATGACCCATCAAATTGCGAAGTGTGCAT 119
                      ************************************************************

consensus_8734#0      AAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAA 166
consensus_8734#1      AAAGTTCGTCGGCTCCTTCATCCAGTCACTTGAGCCTAGTGATTTCAATTCACCAGCGAA 179
                      ************************************************************

consensus_8734#0      AATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTG 226
consensus_8734#1      AATCAGAGATGCATTCATGAAAAGGTGTGAATCTTCAGTTGGAAAGGACAATAGTTTCTG 239
                      ************************************************************

consensus_8734#0      TTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCC 286
consensus_8734#1      TTATTACGTTGGCGGCCTTAAAACATCCGCGGCGAATATTCTTAATAGTCTAGTTGACCC 299
                      ************************************************************

consensus_8734#0      AATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCA 346
consensus_8734#1      AATTTCATGGAAGATGCCTGTGGAAAAGGTTTGTGAAAAGCTGTTCAAAATAGACTCTCA 359
                      ************************************************************

consensus_8734#0      AATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTC 406
consensus_8734#1      AATCTGTGATCTTAGATACGAAAAAGTCATAGATTTTAAGGAGTTCAACTTTGAAAAGTC 419
                      ************************************************************

consensus_8734#0      CAAAGTGAAGGATCTTAAGAAGATCATAGAGAGATGGGGGCTAGAATGTCGTGGTTGTAC 466
consensus_8734#1      CAAAGTGAAG-------------------------------------------------- 429
                      **********                                                  

consensus_8734#0      TGAAAAAGAGATTATATCAGCTTGATTAAAAGTATATGCACAAGCATGATCCTGAAGCAG 526
consensus_8734#1      ------------------------------------------------------------
                                                                                  

consensus_8734#0      CAGCTTATCTTCAAGCAAGGGGGGAGCTTTGAATTTTTAATACATTTCATTGTACAAAGT 586
consensus_8734#1      ------------------------------------------------------------
                                                                                  

consensus_8734#0      TATTTATGAGTTTTTAGTTTTTATAAGTCTGTTCTTTTTAATGAAATATAATT 639
consensus_8734#1      -----------------------------------------------------