These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 784 fasta sequence [AACTAAGCTGATTAGTTTAGTCGGGAGTAATCTTTTTTGTGGAGATTGGTCCCATTTGTACATTGTATTTGTTTGTTTGTTTAATATTCCTATTCTTAGATGATGACAGTATCCCATCAACGTAGAATGGTCACTGGTGATCATTTATTCTAAATTATTGATTATCTGTACTCTTGGTAGATTTTATGTATGATACAATTTTTGTCCACTGAATGAATTTTTTTCACTTTTTTCCTCTCTTGTTCCAAACAATTAGGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACAGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTATTCAGTATCTGAATCTAAAGATAAAGAGGCCAGTCGATTACAAAGTTGGGATGAATATCTTGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAATAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATACTACTTCACGAAAATCAGAATTAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGAGTCAGTCCAGCGGTGTGGATACAGATGATGAGAAATGGTGGGAGTGGAGCTGAGACATCATAGATTATCTTTCAC-ACTATAGNGNCTCTTTGCATANTTCATTGNACAAATAGNCCTCTGNNTAATNTNTNTNA] [+] EMBL CD082409 [AACTAAGCTGATTAGTTTAGTCGGGAGTAATCTTTTTTGTGGAGATTGGTCCCATTTGTACATTGTATTTGTTTGTTTGTTTAATATTCCTATTCTTAGATGATGACAGTATCCCATCAACGTAGAATGGTCACTGGTGATCATTTATTCTAAATTATTGATTATCTGTACTCTTGGTAGATTTTATGTATGATACAATTTTTGTCCACTGAATGAATTTTTTTCACTTTTTTCCTCTCTTGTTCCAAACAATTAGGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACAGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTATTCAGTATCTGAATCTAAAGATAAAGAGGCCAGTCGATTACAAAGTTGGGATGAATATCTTGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAATAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATACTACTTCACGAAAATCAGAATTAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGAGTCAGTCCAGCGGTGTGGATACAGATGATGAGAAATGGTGGGAGTGGAGCTGAGACATCATAGATTATCTTTCAC ACTATAGNGNCTCTTTGCATANTTCATTGNACAAATAGNCCTCTGNNTAATNTNTNTN ] [-] EMBL CD076009 [ AATGAATTTTTTTCACTTTTTTCCTCTCTTGTTCCAAACAATTAGGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACAGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTATTCAGTATCTGAATCTAAAGATAAAGAGGCCAGTCGATTACAAAGTTGGGATGAATATCTTGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAATAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATACTACTTCACGAAAATCAGAATTAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGAGTCAGTCCAGCGGTGTGGATACAGATGATGAG AATGGTGGGAGTGGAGCTGAGACATCATAGATTATC TTCACAACTATAGTGTCTCTTTGCATATTTCATTGTACAAATAG CCTCTGTATAAatatatata] [-] EMBL CD146521 [ TCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTATTCAGTATCTGAATCTAAAGATAAAGAGGCCAGTCGATTACAAAGTTGGGATGAATATCTTGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAATAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATGCTACTTCACGAAAATCAGAATTAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGAGTCAGTCCAGCGGTGTGGATACAGA ] consensusID : consensus_8736#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 674 fasta sequence [GATAGACGAGAGCAAANATACACATGTGTATGTCAGTGGCCTACCNCCGACAATAACCGATGAGGAATTCTCAGCACTAATGTCGAAATGTGGTGTTATCATGAATGAACCGTTTACTAATATCCCTCGTATAAAATTGTACAAGGACCAAGCTGGCATTCCTAAAGGTGATGGGCGTTGCTGTTATGTCAGAGTTGAATCAGTGGAGCTTGCATTGA-AAATTCTCGATGGTATGTTATATAC-AC-CTGGTTATACTATTCATGTGGAACGTGCTAAATTTCAACCTAAAGGAGAATTCGATCCTAAGAAACGTCGACGTTTAACAGTTAAAGAGAAGAAAAAATTGAAAGAACAACAAGAAAATTTATTTCGATGGAGTATTGATACAAGTAAATTTATTCGAGGCAAGAAAGAACGAGTTGTTATTCTTAAAAATGCATTTATAGAGTCAGATTTTCAGCGTGATGTAACTTTAATTCCAATTGTAAGAGAACGATTACGTGTACAATGTGCCAAATGTGGTATTATCAAGAAGATTGTGGTTCATGATGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACGGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAG] [-] EMBL CD199805 [GATAGACGAGAGCAAANATACACATGTGTATGTCAGTGGCCTACCNCCGACAATAACCGATGAGGAATTCTCAGCACTAATGTCGAAATGTGGTGTTATCATGAATGAACCGTTTACTAATATCCCTCGTATAAAATTGTACAAGGACCAAGCTGGCATTCCTAAAGGTGATGGGCGTTGCTGTTATGTCAGAGTTGAATCAGTGGAGCTTGCATTGA AAATTCTCGATGGTATGTTATATAC AC CTGGTTATACTATTCATGTGGAACGTGCTAAATTTCAACCTAAAGGAGAATTCGATCCTAAGAAACGTCGACGTTTAACAGTTAAAGAGAAGAAAAAATTGAAAGAACAACAAGAAAATTTATTTCGATGGAGTATTGATACAAGTAAATTTATTCGAGGCAAGAAAGAACGAGTTGTTATTCTTAAAAATGCATTTATAGAGTCAGATTTTCAGCGTGATGTAACTTTAATTCCAATTGTAAGAGAACGATTACGTGTACAATGTGCCAAATGTGGTATTATCAAGAAGATTGTGGTTCATG ] [-] EMBL CD199790 [GATAGACGAGAGCAAAAATACACATGTGTATGTCAGTGGCCTACCCCCGACAATAACCGATGAGGAATTCTCAGCACTAATGTCGAAATGTGGTGTTATCATGAATGAACCGTTTACTAATATCCCTCGTATAAAATTGTACAAAGACCAAGCTGGCATTCCTAAAGGTGATGGGCGTTGCTGTTATGTCAGAGTTGAATCAGTGGAGCTTGCATTGAGAAATTCTCGATGGTATGTTATATACAACACGGTTTATA T TTCAT TGGAACGTGCTAAATTTCAACCTAAAGGAGAATTTGATCCTAAGAAACGTC ] [-] EMBL CD125731 [ GAAAAAATTGAAAGAACANC AGANAATTATTTTCGATGGAGTATTGATACAAGTAAATTTATTCGAGGCAAGAAAGAACGAGTTGTTATTCTTAAAAATGCATTTATAGAGTCAGATTTTCAGCGTGATGTAACTTTAATTCCAATTGTAAGAGAACGATTACGTGTACAATGTGCCAAATGTGGTATTATCAAGAAGATTGTGGTTCATGATGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACGGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAG] consensusID : consensus_8736#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [TGTACAATGTGCCTCATGTGGTATCATCAAGAAGATTGTGGTTCATGANGCTCATCCAGAAGGCGTTGTCNGTGTAACATTTTCTCCNCCAGAAGAACNGATNCNGGAATCNAATTTCTATCTNNGGCATTATTTGTTGATTNNCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAANNCTANTTATTCNTTNTCTNAATCNCAANATAAAAAGGCCNNTCCATTCCAAATTTGGGATCAATATCTTGGAGGTGATNG] [+] EMBL AA629479 [TGTACAATGTGCCTCATGTGGTATCATCAAGAAGATTGTGGTTCATGANGCTCATCCAGAAGGCGTTGTCNGTGTAACATTTTCTCCNCCAGAAGAACNGATNCNGGAATCNAATTTCTATCTNNGGCATTATTTGTTGATTNNCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAANNCTANTTATTCNTTNTCTNAATCNCAANATAAAAAGGCCNNTCCATTCCAAATTTGGGATCAATATCTTGGAGGTGATNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8736#0 AACTAAGCTGATTAGTTTAGTCGGGAGTAATCTTTTTTGTGGAGATTGGTCCCATTTGTA 60 consensus_8736#2 ------------------------------------------------------------ consensus_8736#1 ----------------------------------------GATAGACGAGAGCAAANATA 20 consensus_8736#0 CATTGTATTTGTTTGTTTGTTTAATATTCCTATTCTTAGATGATGACAGTATCCCATCAA 120 consensus_8736#2 ------------------------------------------------------------ consensus_8736#1 CAC---ATGTGTATGTCAGTGGCCTACCNCCGACAATAACCGATGAGGAATTCTCAGCAC 77 consensus_8736#0 CGTAGAATGGTCACTGGTGATCATTTATTCTAAATTA-TTGATTATCTGTACTCTTGGTA 179 consensus_8736#2 ------------------------------------------------------------ consensus_8736#1 T----AATGTCGAAATGTGGTG--TTATCATGAATGAACCGTTTACTAATATCCCTCGTA 131 consensus_8736#0 -GATTTTATGTATGATACAATTTTTGTCCACTGAATGAATTTTTTTCACTTTTTTCCTCT 238 consensus_8736#2 ----------------------------TGTACAATGTGCCTCATGTGGTATCATCAAGA 32 consensus_8736#1 TAAAATTGTACAAGGACCAAGCTGGCATTCCTAAAGG--TGATGGGCGTTGCTGTTATGT 189 ** * * * consensus_8736#0 CTTGTTCCAAACAATTAGGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCA 298 consensus_8736#2 AG-ATTGTGGTTCATGANGCTCATCCAGAAGGCGTTGTCNGTGTAACATTTTCTCCNCCA 91 consensus_8736#1 CAGAGTTGAATCAGTGGAGCTTGCATTGAAAA--TTCTCGATGGTATGTTATATACACCT 247 * * *** *** ** ** ** * ** * * * ** consensus_8736#0 GAAGAAGCAG---ATACAGGA---ATCAAATTTCTATCTAAGGCATTATTTGTTGATTAT 352 consensus_8736#2 GAAGAA-CNG---ATNCNGGA---ATCNAATTTCTATCTNNGGCATTATTTGTTGATTNN 144 consensus_8736#1 GGTTATACTATTCATGTGGAACGTGCTAAATTTCAACCTAAAGGAGAATTCGATCCTAAG 307 * * * ** * * ****** * ** * * *** * * * consensus_8736#0 CCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTAT 412 consensus_8736#2 CCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAANNCTANTTAT 204 consensus_8736#1 AAACGTCGACGTTTAAC-AGTTAAAGAGAAG-AAAAAATTGAAAGAACAACAAGAAA-AT 364 ** * * * ** ** ***** * ** *** * ** * ** consensus_8736#0 TCAGTATCTGAATCTAAAGATAA-AGAGGCCAGTCGATTACAAAGTTGGGATGAATATCT 471 consensus_8736#2 TCNTTNTCTNAATCNCAANATAA-AAAGGCCNNTCCATTCCAAATTTGGGATCAATATCT 263 consensus_8736#1 T---TATTTCGATGGAGTATTGATACAAGTAAATTTATT-CGAGGCAAGAAAGAACGAGT 420 * * * * ** * * * * * * *** * * * * ** * consensus_8736#0 TGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAA 531 consensus_8736#2 TGGAGGTGATNG------------------------------------------------ 275 consensus_8736#1 TGTTATTCTTAAAAATGCATT---TATAGAGTCAGATTTTCAGCGTGATGTAACTT-TAA 476 ** * * consensus_8736#0 TAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATACTACTTCACG 591 consensus_8736#2 ------------------------------------------------------------ consensus_8736#1 TTCCAATTGTAA-------GAGAACGATTACGTGTACAATGTGCCAAATGTGGTATTATC 529 consensus_8736#0 AAAATCAGAAT-TAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGA 650 consensus_8736#2 ------------------------------------------------------------ consensus_8736#1 AAGA--AGATTGTGGTTCATGATGCTCATCCAGA---------------AGGCGTT---- 568 consensus_8736#0 GTCAGTCCAGCGGTGTGGATACAGATGATGAGAAATGGTGGGAGTGGAGCTGAGACATCA 710 consensus_8736#2 ------------------------------------------------------------ consensus_8736#1 GTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATA-CGGGAATCAAATTTCTATCTAA 627 consensus_8736#0 TAGATTATCTTTCACACTATAGNGNCTCTTTGCATANTTCATTGNACAAATAGNCCTCTG 770 consensus_8736#2 ------------------------------------------------------------ consensus_8736#1 GGCATTATTTGTTG-ATTATCCTGGTTCT--GGAGGACC---TAGACAATTAG------- 674 consensus_8736#0 NNTAATNTNTNTNA 784 consensus_8736#2 -------------- consensus_8736#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||