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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 705 fasta sequence
[CTCCAGGCCAANAATTCGGCACGAGGAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTGGAAATGGTGTTTCGCCAACCAACTAATAAACGTACACTGACATTTGTAGAAATTTCATCTACTACGAGAGTTCCAATTGACCAAGTTGAACATTTTTTGATGAAAGCACTTTCCTTAAAATTGATAAAAGGACGTATTGATGAAGTTAATCAGTGTGTTTCTCTTACTTGGTTACAACNCTCGTGTTCTAGACAAAGAACAGATTGGAAGCATGTGTACTCGATTGAAAGAATGGTCTTCTACAGTTGAAAATATGAAAAACCTTNGTCGAAGTGGATACCAAATCTATTNTGACTTG-AAAGTATNNTCGTGTTTATTAATCCGCTNTCTTGTACACCCGTTTGTAATC-ACCAGCACATACTTTT-ATAA]
[+] EMBL CD080742 [CTCCAGGCCAANAATTCGGCACGAGGAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTGGAAATGGTGTTTCGCCAACCAACTAATAAACGTACACTGACATTTGTAGAAATTTCATCTACTACGAGAGTTCCAATTGACCAAGTTGAACATTTTTTGATGAAAGCACTTTCCTTAAAATTGATAAAAGGACGTATTGATGAAGTTAATCAGTGTGTTTCTCTTACTTGGTTACAACNCTCGTGTTCTAGACAAAGAACAGATTGGAAGCATGTGTACTCGATTGAAAGAATGGTCTTCTACAGTTGAAAATATGAAAAACCTTNGTCGAAGTGGATACCAAATCTATTNTGACTTG AAAGTATNNTCGTGTTTATTAATCCGCTNTCTTGTACACCCGTTTGTAATC ACCAGCACATACTTTT ATA ]
[-] EMBL CD193982 [ CGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAATTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGC ]
[-] EMBL CD074667 [ CACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCCCATTATTATGTCTAGTGGAAATGGTGTTTCGCCAACCAACTAATAAACGTACACTGACATTTGTAGAAATTTCATTTACTACGAGAGTTCCAATTGACCAAGTTGAACATTTTTTGATGAAAGCACTTTCCTTAAAATTGATAAAAGGACGTATTGATGAAGTTAATCAGTGTGTTTCTCTTACTTGGTTACAAC CTCGTGTTTTAGACAAAGAACAGATTGGAAGCATGTGTACTCGATTGAAAGAATGGTTTTTTACAGTTGAAAATATGAAAAACCTT GTCGAAGTGGATACAAAATTTATTTTGACTTGAAAAGTAT TTCGTGTTTATTAATCCGCTTTCTTGTACACCCGTTTGTAATCAACCAGCACATACTTTTAATAA]
consensusID : consensus_8737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 559 fasta sequence
[CGTTATGAGTTTTCTGGCAAATCCATGGATGCGAAAATACTACTTAACACAACTATTGGAATGATTTACTTGACAGCACTTAGCGATTTACCGAGTGCTCGTCAAATAATTGAGAATACACAAACTCAGTTAAATGAAATCGAAGGTGTTACTACAGTACACTCAAGGTTTTATCAACTTAGTTCAAGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATTATCTACGCAGCCCTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTGGAAATGGTGTTTCGCCAAC]
[+] EMBL CD083317 [CGTTATGAGTTTTCTGGCAAATCCATGGATGCGAAAATACTACTTAACACAACTATTGGAATGATTTACTTGACAGCACTTAGCGATTTACCGAGTGCTCGTCAAATAATTGAGAATACACAAACTCAGTTAAATGAAATCGAAGGTGTTACTACAGTACACTCAAGGTTTTATCAACTTAGTTCAAGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATTATCTACGCAGCCCTTGGTGTGTTCAAG ]
[-] EMBL CD115813 [ TTTACTTGACAGCACTTAGCGATTTACCGAGTGCTCGTCAAATAATTGAGAATACACAAACTCAGTTAAATGAAATCGCAGGTGTTACTACAGTACACTCAAGGTTTTTTCAACTTAGTTCAAGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGTTGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCGTGGCTTATTGACCTACTGCAAGCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAAGCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTGGAAATGGTGTTTCGCCAAC]
[+] EMBL CD192725 [ TTTTATCAACTTAGTTCAGGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACT ]
[-] EMBL CD154889 [ CACTTCGTTTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTTTCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACACATGATGTCTTGAAAAGTTTGCAAGGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8737#0 ------------------------------------------------------------
consensus_8737#1 CGTTATGAGTTTTCTGGCAAATCCATGGATGCGAAAATACTACTTAACACAACTATTGGA 60
consensus_8737#0 ------------------------------------------------------------
consensus_8737#1 ATGATTTACTTGACAGCACTTAGCGATTTACCGAGTGCTCGTCAAATAATTGAGAATACA 120
consensus_8737#0 ------------------------------------------------------------
consensus_8737#1 CAAACTCAGTTAAATGAAATCGAAGGTGTTACTACAGTACACTCAAGGTTTTATCAACTT 180
consensus_8737#0 -------------------CTCCAGGCCAANAATTCGGCA-----CGAGGAGCACTTCGT 36
consensus_8737#1 AGTTCAAGATATTATCAAATTACTGGACAACATGCTGAATTTTATCAAGAAGCACTTCGT 240
* * ** *** * * * ** **********
consensus_8737#0 TTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTT 96
consensus_8737#1 TTTCTCGGTTGTGTGGATTTAAACAGTCTGAGTGCCGAAGAACAAAGAGGATGGGCATTT 300
************************************************************
consensus_8737#0 TCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACA 156
consensus_8737#1 TCTGTTGGTTTGGCAGCTATTCTTAGTGATGGTGTTTACAGCTTTGGCGAACTCCTGACA 360
************************************************************
consensus_8737#0 CATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAA 216
consensus_8737#1 CATGATGTCTTGAAAAGTTTGCAAGGTTCTTCAGAGGCATGGCTTATTGACCTACTGCAA 420
************************************************************
consensus_8737#0 GCTTTCAATAGAGGTGATTTAAATCAGTTAGATAATCTACGCAGCCGTTGGTGTGTTCAA 276
consensus_8737#1 GCTTTCAATAGAGGTGATTTAAATCAGTTAGATTATCTACGCAGCCCTTGGTGTGTTCAA 480
********************************* ************ *************
consensus_8737#0 GCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTG 336
consensus_8737#1 GCTGATCTAGTAGCTGCTGAACCAAAATTAAAGGACAAAGTCACATTATTATGTCTAGTG 540
************************************************************
consensus_8737#0 GAAATGGTGTTTCGCCAACCAACTAATAAACGTACACTGACATTTGTAGAAATTTCATCT 396
consensus_8737#1 GAAATGGTGTTTCGCCAAC----------------------------------------- 559
*******************
consensus_8737#0 ACTACGAGAGTTCCAATTGACCAAGTTGAACATTTTTTGATGAAAGCACTTTCCTTAAAA 456
consensus_8737#1 ------------------------------------------------------------
consensus_8737#0 TTGATAAAAGGACGTATTGATGAAGTTAATCAGTGTGTTTCTCTTACTTGGTTACAACNC 516
consensus_8737#1 ------------------------------------------------------------
consensus_8737#0 TCGTGTTCTAGACAAAGAACAGATTGGAAGCATGTGTACTCGATTGAAAGAATGGTCTTC 576
consensus_8737#1 ------------------------------------------------------------
consensus_8737#0 TACAGTTGAAAATATGAAAAACCTTNGTCGAAGTGGATACCAAATCTATTNTGACTTGAA 636
consensus_8737#1 ------------------------------------------------------------
consensus_8737#0 AGTATNNTCGTGTTTATTAATCCGCTNTCTTGTACACCCGTTTGTAATCACCAGCACATA 696
consensus_8737#1 ------------------------------------------------------------
consensus_8737#0 CTTTTATAA 705
consensus_8737#1 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||