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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1155 fasta sequence [CCGAGCCAANAATTCGGCACGAGGGCGAACAGCAAATTACATGACAGCTCATACCAAAGATTGTCCATCATGTCATGTGTGTATCGAGAAAAATGAAGGTTGCAATCATATGAAATGCTCAATTTGTCACTACGAATTCTGCTGGGTGTGTTTAGGGGTTTGGAAATCACACGATGCAGAATACTATTTTTGCAGCAAATATCAAGAGAATCCAGATTCTGCAAAAGAATCCGTACGAACACGTGCACGTGAATCCCTGGAACGCTACATGTTTTATTATGAACGATGGGAAAATCATGAACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAAAGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATACATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAAATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGATTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAATGGATATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGGAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCANATAGACTCATTGAAACACATTAATCTTGGCTTCTGATNCATAGCGTGTGCTATTTGCCAAATTTGCTATGTCTTATTTTTATTATAATGTNATCTATCTTTACCAGTTACTATCGGNGATNTAATCATACTTGATATNCTCTAGAACACTATGGAATNCTCCTTGAATNNATATCAATCTCGATATA] [+] EMBL CD082695 [CCGAGCCAANAATTCGGCACGAGGGCGAACAGCAAATTACATGACAGCTCATACCAAAGATTGTCCATCATGTCATGTGTGTATCGAGAAAAATGAAGGTTGCAATCATATGAAATGCTCAATTTGTCACTACGAATTCTGCTGGGTGTGTTTAGGGGTTTGGAAATCACACGATGCAGAATACTATTTTTGCAGCAAATATCAAGAGAATCCAGATTCTGCAAAAGAATCCGTACGAACACGTGCACGTGAATCCCTGGAACGCTACATGTTTTATTATGAACGATGGGAAAATCATGAACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAAAGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATACATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAAATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGATTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAATGGATATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGGGTTTTTCTA ] [-] EMBL CD178775 [ GAGAATCCAGATTCTGCAAAAGAATCCGTACGAACACGTGCACGTGAATCCCTGGAACGCTACATGTTTTATTATGAACGATGGGAAAATCATGAACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAAAGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATACATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAAATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGATTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAATGGATATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGGAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGA ] [+] EMBL CD082490 [ gcGGAAAATCATGAACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAAAGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATACATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAAATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGATTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAATGGATATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCANATAGACTCATTGAAACACATTAATCTTGGCTTCTGATNCATAGCGTGTGCTATTTGCCAAATTTGCTATGTCTTATTTTTATTATAATGTNATCTATCTTTACCAGTTACTATCGGNGATNTAATCATACTTGATATNCTCTAGAACACTATGGAATNCTCCTTGAATNNATATCAATCTCGATATA] consensusID : consensus_8738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [AGTTGGCAGTACAACTTTGCCCTCGGAAATTGAGTTACTGATTCCCCCACTGAGTTACTTGGTATGGTAAGACTTAAAGAAATAGATTTTTCAGTCAATGTAGCTTGACTGGGTTGGTGCGGTAGGTAAGCCTGACCACCACGCCATGGTAACAGCTACAATCCGGATTTTCTGGTTACCATAACTAGGAACTACATAGCACATTTAGCTTCTCATTGTAGTTATAAATTCAAGTCATCGAGCTTGTAGTACTACAAACCAATGCTTATTCATTTTATTTGTATTTGTAATTCTCAGGTTAAATGATTTAACGTTTCGTATTTTTTCCAATGGTTTTAGAGTCATCCATCATTACGTTTTTGTGTCGGTCTGAGTTGTCCTGTTTTGATTTGTGCGCTTGAAGAACCAAAGGCACGGCGCGTTCAGTGCGAGCGGTGCCATGCAGAGTTCTGTTTTATGTGCTCGGAAGCATATCATGCTCCAACTAGTTGTGCAACTTTAAAGCATTGGCTTGTTAAGTGTCGAGATGATTCAGGAACAGCANATTACATGACAGCTCATACCAAAGATTGTCCATCATGTCACGTGTGTATCGAGAAAAAATGAA] [+] EMBL CD136974 [AGTTGGCAGTACAACTTTGCCCTCGGAAATTGAGTTACTGATTCCCCCACTGAGTTACTTGGTATGGTAAGACTTAAAGAAATAGATTTTTCAGTCAATGTAGCTTGACTGGGTTGGTGCGGTAGGTAAGCCTGACCACCACGCCATGGTAACAGCTACAATCCGGATTTTCTGGTTACCATAACTAGGAACTACATAGCACATTTAGCTTCTCATTGTAGTTATAAATTCAAGTCATCGAGCTTGTAGTACTACAAACCAATGCTTATTCATTTTATTTGTATTTGTAATTCTCAGGTTAAATGATTTAACGTTTCGTATTTTTTCCAATGGTTTTAGAGTCATCCATCATTACGTTTTTGTGTCGGTCTGAGTTGTCCTGTTTTGATTTGTGCGCTTGAAGAACCAAAGGCACGGCGCGTTCAGTGCGAGCGGTGCCATGCAGAGTTCTGTTTTATGTGCTCGGAAGCATATCATGCTCCAACTAGTTGTGCAACTTTAAAGCATTGGCTTGTTAAGTGTCGAGATGATTCAGGAACAGCANATTACATGACAGCTCATACCAAAGATTGTCCATCATGTCACGTGTGTATCGAGAAAAAATGAA] consensusID : consensus_8738#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 603 fasta sequence [ATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCAAATAGACTCATTGAAACACATTAAATCTTGGCTTCTGATTTCATAGCGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATTTTTTATTATAAATGTTTATCTATTCTTTACCAGTTTTACTATCTGTGTGATTTTAATCATTAACTTTGATTATTCCTCTAAGATCTACTTATTGTAAATCTTTCTCTTTGATATTTATTTATCATATTCTTTCGTATAAATATTTGGTTAGTCGTTAA] [-] EMBL CD076087 [ATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCAAATAGACTCATTGAAACCCATTAAATCTTGGCTTCTGATTTCATAGCGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATTTTTTATTATAAATGTTTATCTATTCTTTACCAGTTTTACTATCTGTGTGATTTTAATCATTAACTTTGATTATTCCTCTAAGATCTACTTATTGTAAATCTTTCTCTTTGATATTTATTTATCATATTCTTTCGTATAAATATTTGGTTAGTCGTTAA] [-] EMBL CD076286 [ CTAACTAATTAAATCATATTCTCATTTCTTTTGTGTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCAAATAGACTCATTGAAACACATTAAATCTTGGCTTCTGATTTCATAGCGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATTTTTTATTATAAATGTTTATCTATTCTTTACCAGTTTTACTATCTGTGTGATTTTAATCATTAACTTTGATTATTCCTCTAAGATCTACTTATTGTAAATCTTTCTCTTTGATATTTATTTATCATATTCTTTCGTATAAATATTTG ] [-] EMBL AA999636 [ GACAATGACACACACTACCGGTGTTAACGANTACATAGCAACTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCAAATAGACTCATTGAAACACATTAAATCTTGGCTTCTGATTTCATAGCGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATNTTTTATTATAAATGTTTATCTATTCTTTACCAGTTTTACTATCTGTGTGATTTTAATCATTAACTTCGATTATTCCTCTAAGATCTACTTATTGTAAATCTTTCTCTTTGATATTTATTTATCATATTCTTTCGTATAAATATTTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8738#0 CCGAGCCAANAATTCGGCACGAGGGCGAACAGCAAATTACATGACAGCTCATACCAAAGA 60
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------------------------------------
consensus_8738#0 TTGTCCATCATGTCATGTGTGTATCGAGAAAAATGAAGGTTGCAATCATATGAAATGCTC 120
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------------------------------------
consensus_8738#0 AATTTGTCACTACGAATTCTGCTGGGTGTGTTTAGGGGTTTGGAAATCACACGATGCAGA 180
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------------------------------------
consensus_8738#0 ATACTATTTTTGCAGCAAATATCAAGAGAATCCAGATTCTGCAAAAGAATCCGTACGAAC 240
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------------------------------------
consensus_8738#0 ACGTGCACGTGAATCCCTGGAACGCTACATGTTTTATTATGAACGATGGGAAAATCATGA 300
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------------------------------------
consensus_8738#0 ACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAA 360
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------------------------------------
consensus_8738#0 AGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATAC 420
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------------------------------------
consensus_8738#0 ATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAA 480
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------------------------------------
consensus_8738#0 ATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGA 540
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------------------------------------
consensus_8738#0 TTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAAT 600
consensus_8738#2 ------------------------------------------------------------
consensus_8738#1 ------------------------------AGTTGGCAGTACAACTTTGCCCTCGGAAAT 30
consensus_8738#0 GGATATTTGTGAAAAGCATCGTTTAACT--TTGTTACAAGAATTTCTAACTAATTAAATC 658
consensus_8738#2 ----ATTTGTGAAAAGCATCGTTTAACT--TTGTTACAAGAATTTCTAACTAATTAAATC 54
consensus_8738#1 TG--AGTTACTGATTCCCCCACTGAGTTACTTGGTATGGTAAGACTTAAAGAAATAGATT 88
* ** * * * * * * *** ** ** *** ** ** **
consensus_8738#0 ATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGGAGAATTATTTATTTATTACCTTTAT 718
consensus_8738#2 ATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTAT 114
consensus_8738#1 TTTCAGTCAATGTAGCTTGACTGGGTTGGTGCGGTAGGTAAGCCTGACCACCACGCC-AT 147
* *** * * * * * * * ** * * ** **
consensus_8738#0 GTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATC-TAT 777
consensus_8738#2 GTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATC-TAT 173
consensus_8738#1 GGTAACAGC---TACAATCCGGATTTTCTGGTTACCATAACTAGGAACTACATAGCACAT 204
* ** ** ** ** ** * * * * **** ** * **
consensus_8738#0 CTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACG-ATTACATAGCATCT 836
consensus_8738#2 CTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACG-ATTACATAGCATCT 232
consensus_8738#1 TTAGCTTCTCATTGTAGTTATAAATTCAAGTCATCGAGCTTGTAGTACTACAAACCAATG 264
** * ** * ** * ** ** * ** ** * * **** * **
consensus_8738#0 TTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTC-TGTTA 895
consensus_8738#2 TTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTC-TGTTA 291
consensus_8738#1 CTTATTCATTTTAT-TTGTATTTGTAATTCTCAGGTTAAATGATTTAACGTTTCGTATTT 323
** ** *** * ** ** * ** * *** * * ** *** * **
consensus_8738#0 ATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTT-C 954
consensus_8738#2 ATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTT-C 350
consensus_8738#1 TTTCCAATGGTTTTAGAGTCATCCATCATTACGTTTTTGTGTCGGTCTGAGTTGTCCTGT 383
* **** * * **** ** * * * * * * * ** * *
consensus_8738#0 ACTGTTGAGTGCANATAGACTCATTGAAACACATTAA-TCTTG-GCTTCTGATN-CATAG 1011
consensus_8738#2 ACTGTTGAGTGCAAATAGACTCATTGAAACACATTAAATCTTG-GCTTCTGATTTCATAG 409
consensus_8738#1 TTTGATTTGTGCGCTTGAAGAACCAAAGGCACGGCGCGTTCAGTGCGAGCGGTGCCATGC 443
** * **** * * * *** * * ** * * ***
consensus_8738#0 CGTGTGCTATTTGCCAAATTTGC-TATGTCTTA--TTTTTATTATAA-TGTN-ATCTAT- 1065
consensus_8738#2 CGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATTTTTTATTATAAATGTTTATCTATT 469
consensus_8738#1 AGAGTTCTGTTTTATGTGCTCGGAAGCATATCATGCTCCAACTAGTTGTGCAACTTTAAA 503
* ** ** *** * * * * * * ** ** * **
consensus_8738#0 -CTTTACCAGTT--ACTATCGGNGATNT-----AATCATACTTGATATNCTCTAGAACAC 1117
consensus_8738#2 -CTTTACCAGTTTTACTATCTGTGTGAT-----TTTAATCATTAACTTTGATTATTCCTC 523
consensus_8738#1 GCATTGGCTTGTTAAGTGTCGAGATGATTCAGGAACAGCANATTACATGACAGCTCATAC 563
* ** * * * * ** * * * * *
consensus_8738#0 TATGGAATNCTCCTTGAATNNATATCAATCTCGATATA---------------------- 1155
consensus_8738#2 TAAGATCTACTTATTGTAAATCTTTCT-CTTTGATATTTATTTATCATATTCTTTCGTAT 582
consensus_8738#1 CAAAGATTGTCCATCATGT-CACGTGTGTATCGAGAAAAAATGAA--------------- 607
* * * * * ** *
consensus_8738#0 ---------------------
consensus_8738#2 AAATATTTGGTTAGTCGTTAA 603
consensus_8738#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||