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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1114 fasta sequence
[TTAGCTCCGCACTTAAAAGGCCTTACCGCTGGAAACAGAAAACCGTGAGGTAAAGCATGACATTGTTTGGGCTGACTTCTCTTAACTCCAATTGAGAAGGCAGTAACTATGCAAATGTCGGCTTTTCTGAAGAAAACATTTTACTTCAGACGCACTCCGGTACGGTTAGCCGTATGATTTGACCATCAGGACCTAGGTTGCTGCTTTTAGTTTTACTGTTTTGACTGTGTTACAGTCAACATAGCTCGATTAGGCCATCACAATAAATAACCCCGACCACTATGTTAAGGTAGCAGCTAGGACCCCATACCATAGTGAAACAGCTATCATAATTTCTAGCCTACACTAGCAGAATATAAGAAATTACATAGAGTAGGACAAAGAATCAGCATAAACCTGATGTTAATGACTAAAACTAAAAAGAAAAGAGAATTAGACAAAGATCACCAACCTAGAAGGAATGTTATTTGAGTTTTCACTATTCACATTGAATTTAAAGCCTATAGCTGATTGGGCGAAATTTGCTTCAGCTTTTGCATCAGCTTCTTGAGCAATTAAAGCAGCTTCAGCTTGTAAAACATATTCAATTAAATAATTTGGCCATTTTTCACTATTTAGTTTTGTCGATGTACATTTTTCAGTTTTTGATGCTGAATAATAACGAGATAATGAATATGCGGAAAGTGCTTCTGTTTAAGAAAATCATCGGCTTCTTTGCAAGCTATACTAGCAACTGCATTGTCTTCTGAAGAAAGCCTTTGCACTAAATCAAAAACTTTTTCGGCATCCTGCAGTTTTTTCAGAGACTCTTTTGTCTTCATGGTGTTCAGCTTCTTGCAGGTTTATGTTTAGACTTAAAGTACTCTGTGTGTTGGGAGGATTATGAGAAGCAGTTTATGAAGAAATCTGGATGAAAAAATAAAAGAAAAAGTGAGCCGGCGACTCTGAGTACATGTGATACACTTACATTTAATAATGAAAACAATCGACGACAGTCAGTACGAACGAAATGGTAAGATTAAGGCGATCTGATAATGTTAAGGAGTTGATAGCGTACGGTTTCGAATGCGTCACAATCACACAAACCGCGCACAACANACTGTCCCGTNCTTTN]
[-] EMBL CD094582 [TTAGCTCCGCACTTAAAAGGCCTTACCGCTGGAAACAGAAAACCGTGAGGTAAAGCATGACATTGTTTGGGCTGACTTCTCTTAACTCCAATTGAGAAGGCAGTAACTATGCAAATGTCGGCTTTTCTGAAGAAAACATTTTACTTCAGACGCACTCCGGTACGGTTAGCCGTATGATTTGACCATCAGGACCTAGGTTGCTGCTTTTAGTTTTACTGTTTTGACTGTGTTACAGTCAACATAGCTCGATTAGGCCATCACAATAAATAACCCCGACCACTATGTTAAGGTAGCAGCTAGGACCCCATACCATAGTGAAACAGCTATCATAATTTCTAGCCTACACTAGCAGAATATAAGAAATTACATAGAGTAGGACAAAGAATCAGCATAAACCTGATGTTAATGACTAAAACTAAAAAGAAAAGAGAATTAGACAAAGATCACCAACCTAGAAGGAATGTTATTTGAGTTTTCACTATTCACATTGAATTTAAAGCCTATAGCTGATTGGGCGAAATTTGCTTCAGCTTTTGCATCAGCTTCTTGAGCAATTAAAGCAGCTTCAGCTTGTAAAACATATTCAATTAAATAATTTGGCCATTTTTCACTATTTAGTT ]
[-] EMBL CD094577 [ GGTANAGCATGACATTGTTAGGGCTGACTTCTCTTAACTCCAATTGGGAAGGCAGTAACTATGCAAATGTCGGCTTTTCTGAAGAAAACATTTTACTTCAGACGCACTCCGGTACGGTTAGCCGTATGATTTGACCATCAGGACCTAGGTTGCCGCTTTTAGTTTTACTGTTTTGACTGTGTTACAGTCAACATAGCTCGATTAGGCCATCACAATAAATAACCCCGACCACTATGTTAAGGTAGCAGCTAGGACCCCATACCATAGTGAAACAGCTATCATAATTTCTAGCCTACACTAGCAGAATATAAGAAATTACATAGAGTAGGACAAAGAATCAGCATAAACCTGATGTTAATGACTAAAACTAAAAAGAAAAGAGAATTAGACAAAGATCACCAACCTAGAAGGAATGTTATTTGAGTTTTCACTATTCACATTGAATTTAAAGCCTATAGCTGATTGGGCGAAATTTGCTTCAGCTTTTGCATCAGCTTCTTGAGCAATTAAAGCAGCTTCAGCTTGTAAAACATATTCAATTAAATAATTTGGCCATTTTTCACTATTTAGTT ]
[+] EMBL CD178222 [ TGAGTTTTCACTATTCACATTGAATTTAAAGCCTATAGCTGATTGGGCGAAATTTGCTTCAGCTTTTGCATCAGCTTCTTGAGCAATTAAAGCAGCTTCAGCTTGTAAAACATATTCAATTAAATAATTTGGCCATTTTTCACTATTTAGTTTTGTCGATGTACATTTTTCAGTTTTTGATGCTGAATAATAACGAGATAATGAATATGCGGAAAGTGCTTCTGTTTAAGAAAATCATCGGCTTCTTTGCAAGCTATACTAGCAACTGCATTGTCTTCTGAAGAAAGCCTTTGCACTAAATCAAAAACTTTTTCGGCATCCTGCAGTTTTTTCAGAGACTCTTTTGTCTTCATGGTGTTCAGCTTCTTGCAGGTTTATGTTTAGACTTAAAGTACTCTGTGTGTTGGGAGGATTATGAGAAGCAGTTTATGAAGAAATCTGGATGAAAAAATAAAAGAAAAAGTGAGCCGGCGACTCTGAGTACATGTGATACACTTACATTTAATAATGAAAACAATCGACGACAGTCAGTACGAACGAAATGGTAAGATTAAGGCGATCTGATAATGTTAAGGAGTTGATAGCGTACGGTTTCGAATGCGTCACAATCACACAAACCGCGCACAACANACTGTCCCGTNCTTTN]
consensusID : consensus_8739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[ATACAGTTGGGGTAAATATAGATGGCTTATTCTACGGAGCTCAGTGGGAGTAAAACCGTAAATGTATAGAGACATGAAAATTGCGTATGGAAACTTTTGTTGAATTCTATCTGAAAAAATAAGGCCGTTGATAGACATCAGAAGTTACTTTCGTGTAAAGGCTAGAACATATTACAAACCAAACTTACCCATTAATTTATAAATCGGTATGAAAAAATGCTGCCAGTTTTACTTGTAACTTACTTGAGCTCTATTAGTATATAAAATATCATAATCCTTTGCCACATCGATTGCCTGTGAATACAACTCCACAGCTTTTTTAAAGTTCCCAGCCTTGAAAAATGTATTTGCACGATCCTTGAGTTTATCTGCACGTTCTCGTTGTCTAGCTCGTCGCTCAGCACGTTCTTGTGCGTCCTGTGCAACCGCAGTCATAAATGCAGTCACATCACCCCCTTTTCTAGTTACATCATCTGTGTNGGAAAATTTCCAAAACCAGTAACTACATTACACAAGAAAATTGCATCATTTACATTAAGTGAAC]
[+] EMBL CD079875 [ATACAGTTGGGGTAAATATAGATGGCTTATTCTACGGAGCTCAGTGGGAGTAAAACCGTAAATGTATAGAGACATGAAAATTGCGTATGGAAACTTTTGTTGAATTCTATCTGAAAAAATAAGGCCGTTGATAGACATCAGAAGTTACTTTCGTGTAAAGGCTAGAACATATTACAAACCAAACTTACCCATTAATTTATAAATCGGTATGAAAAAATGCTGCCAGTTTTACTTGTAACTTACTTGAGCTCTATTAGTATATAAAATATCATAATCCTTTGCCACATCGATTGCCTGTGAATACAACTCCACAGCTTTTTTAAAGTTCCCAGCCTTGAAAAATGTATTTGCACGATCCTTGAGTTTATCTGCACGTTCTCGTTGTCTAGCTCGTCGCTCAGCACGTTCTTGTGCGTCCTGTGCAACCGCAGTCATAAATGCAGTCACATCACCCCCTTTTCTAGTTACATCATCTGTGTNGGAAAATTTCCAAAACCAGTAACTACATTACACAAGAAAATTGCATCATTTACATTAAGTGAAC]
consensusID : consensus_8739#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[GATCCTTGAGTTTATCTGCACGTTCTCGTTGTCTAGCTCGTCGCTCAGCACGTTCTTGTGCGTCCTGTGCAACCGCAGTCATAAATGCAGTCACATCACCCCCTTTTCTAGTTACATCATCTAAGTTTTTTGAAGGTTGGTCCAATTTATTGATAACAGACCTGTCAAAACCATCACTGCACTTCTGTTTAAGAAAATCATCGGCTTCTTTGCAAGCTATACTAGCAACTGCATTGTCCTCTGAAGAAAGCCTTTGGACTAAATCAAAAACTTTTTCGGCATCCTGCAGTTTTTTCAGAGACTCTTTTGTCTTCATGGTGTTCAGCTTCTTGCAGGTTTATGTTTAGACTTAAAGTACTCTGTGTGTTGGGAGGATTATGAGAAGCAGTTTATGAAGAAATATTTAATAATGAAAACAATCGACGACAGTCAGTACGAACGAAATGGTAAGATTAAGGCGATCTGATAATGTTAAGGAGTGATAGCGTACNGGTTTC]
[-] EMBL CD063687 [GATCCTTGAGTTTATCTGCACGTTCTCGTTGTCTAGCTCGTCGCTCAGCACGTTCTTGTGCGTCCTGTGCAACCGCAGTCATAAATGCAGTCACATCACCCCCTTTTCTAGTTACATCATCTAAGTTTTTTGAAGGTTGGTCCAATTTATTGATAACAGACCTGTCAAAACCATCACTGCACTTCTGTTTAAGAAAATCATCGGCTTCTTTGCAAGCTATACTAGCAACTGCATTGTCCTCTGAAGAAAGCCTTTGGACTAAATCAAAAACTTTTTCGGCATCCTGCAGTTTTTTCAGAGACTCTTTTGTCTTCATGGTGTTCAGCTTCTTGCAGGTTTATGTTTAGACTTAAAGTACTCTGTGTGTTGGGAGGATTATGAGAAGCAGTTTATGAAGAAATATTTAATAATGAAAACAATCGACGACAGTCAGTACGAACGAAATGGTAAGATTAAGGCGATCTGATAATGTTAAGGAGTGATAGCGTACNGGTTTC]
consensusID : consensus_8739#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 342 fasta sequence
[CATAAAAAGACGATTCATATAGCGTAATCCTGCGCTATAGTATCTAGAA-TTTGATTTCTTCGAGCTAATTGAGCTAGGAGACTTAAAAGTTGTTGGCTAGAAGGAATGTTATTTGAGTTTTCACTATTCACATTGAATTTAAAGCCTATAGCTGATTGGGCGAAATTTGCTTCAGCTTTTGCATCAGCTTCTTGAGCAATTAAAGCAGCTTCAGCTTGTAAAACATATTCAATTAAATAATTTGGCCATTTTTCACTATTTAGTTTTGTCGATGTACATTTTTCAGTTTTTGATGCTGAATAATAACGAGATAATGAATATGCGGAAAGTGCTTCTGAATGG]
[+] EMBL CD064298 [CATAAAAAGACGATTCATATAGCGTAATCCTGCGCTATAGTATCTAGAA TTTGATTTCTTCGAGCTAATTGAGCTAGGAGACTTAAAAGTTGTTGGCTAGAAGGAATGTTATTTGAGTTTTCACTATTCACATTGAATTTAAAGCCTATAGCTGATTGGGCGAAATTTGCTTCAGCTTTTGCATCAGCTTCTTGAGCAATTAAAGCAGCTTCAGCTTGTAAAACATATTCAATTAAATAATTTGGCCATTTTTCACTATTTAGTTTTGTCGATGTACATTTTTCAGTTTTTGATGCTGAATAATAACGAGATAATGAATATGCGGAAAGTGCTTCTG ]
[+] EMBL CD166640 [ actcgacGACGCATCATATAGCGTAATCCTGCGCTATAGTATCTAGAATTTTGATTTCTTCGAGCTAATTGAGCTAGGAGACTTAAAAGTTGTTGGCTAGAAGGAATGTTATTTGAGTTTTCACTATTCACATTGAATTTAAAGCCTATAGCTGATTGGGCGAAATTTGCTTCAGCTTTTGCATCAGCTTCTTGAGCAATTAAAGCAGCTTCAGCTTGTAAAACATATTCAATTAAATAATTTGGCCATTTTTCACTATTTAGTTTTGTCGATGTACATTCTTCAGTTTTTGATGCTGAATAATAACGAGATAATGAATATGCGGAAAGTGCTTCTGAATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8739#0 TTAGCTCCGCACTTAAAAGGCCTTACCGCTGGAAACAGAAAACCGTGAGGTAAAGCATGA 60
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 ------------------------------------------------------------
consensus_8739#1 ------------------------------------------------------------
consensus_8739#0 CATTGTTTGGGCTGACTTCTCTTAACTCCAATTGAGAAGGCAGTAACTATGCAAATGTCG 120
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 ------------------------------------------------------------
consensus_8739#1 ------------------------------------------------------------
consensus_8739#0 GCTTTTCTGAAGAAAACATTTTACTTCAGACGCACTCCGGTACGGTTAGCCGTATGATTT 180
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 ------------------------------------------------------------
consensus_8739#1 ------------------------------------------------------------
consensus_8739#0 GACCATCAGGACCTAGGTTGCTGCTTTTAGTTTTACTGTTTTGACTGTGTTACAGTCAAC 240
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 ------------------------------------------------------------
consensus_8739#1 ------------------------------------------------------------
consensus_8739#0 ATAGCTCGATTAGGCCATCACAATAAATAACCCCGACCACTATGTTAAGGTAGCAGCTAG 300
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 ------------------------------------------------------------
consensus_8739#1 ------------------------------------------------------------
consensus_8739#0 GACCCCATACCATAGTGAAACAGCTATCATAATTTCTAGCCTACACTAGCAGAATATAAG 360
consensus_8739#3 -------------------------------------------------CATAAAAAGAC 11
consensus_8739#2 ------------------------------------------------GATCCTTGAGTT 12
consensus_8739#1 ------ATACAGTTGGGGTAAATATAGATGGCTTATTCTACGGAGCTCAGTGGGAGTAAA 54
consensus_8739#0 AAATTACATAGAGTAGGACAAAGAATCAGCATAAACCTGATGTTAATGACTAAAAC-TAA 419
consensus_8739#3 GATTCATATAGCGTAATCCTGCGCTATAGTATCTAG--AATTTGATTTCTTCGAGC-TAA 68
consensus_8739#2 TATCTGCACGTTCTCGTTGTCTAGCTCGTCGCTCAGCACGTTCTTGTGCGTCCTGTGCAA 72
consensus_8739#1 ACCGTAAATGTATAGAGACATGAAAATTGCGTATGGAAACTTTTGTTGAATTCTATCTGA 114
* * * * *
consensus_8739#0 AAAGAAAAGAGAATTAGACAAAGATCACCAACCTAGAAGGAATGTTATTTGAGTTTTCAC 479
consensus_8739#3 TTGAGCTAGGAGACT---TAAAAGTTGTTGGC-TAGAAGGAATGTTATTTGAGTTTTCAC 124
consensus_8739#2 CCGCAGTCATAAATGCAGTCACATCACCCCCTTTTCTAGTTACATCATCTAAGTTTTTTG 132
consensus_8739#1 AAAAATAAGGCCGTTGATAGACATCAGAAGTTACTTTCGTGTAAAGGCTAGAACATATTA 174
* * * *
consensus_8739#0 TATTCACATTGAATTTAAAGCCT-ATAG--CTGATTGGGCGA--AATTT-GCTTCAGCTT 533
consensus_8739#3 TATTCACATTGAATTTAAAGCCT-ATAG--CTGATTGGGCGA--AATTT-GCTTCAGCTT 178
consensus_8739#2 AAGGTTGGTCCAATTTATTGATA-ACAGACCTGTCAAAACCATCACTGC-ACTTCTGTTT 190
consensus_8739#1 CAAACCAAACTTACCCATTAATTTATAAATCGGTATGAAAAAATGCTGCCAGTTTTACTT 234
* * * * * * * * * ** **
consensus_8739#0 TTG-----CATCAGCTTCTT---GAGCAATTAAAGCAGCTTCA--GCTTGTAAAA--CAT 581
consensus_8739#3 TTG-----CATCAGCTTCTT---GAGCAATTAAAGCAGCTTCA--GCTTGTAAAA--CAT 226
consensus_8739#2 AAGAAAATCATCGGCTTCTTTGCAAGCTATACTAGCAACTGCATTGTCCTCTGAA--GAA 248
consensus_8739#1 GTAACTTACTTGAGCTCTATT---AGTATATAAAATATCATAATCCTTTGCCACATCGAT 291
* * *** * ** * * * * * *
consensus_8739#0 ATTCAATTAA-ATAATTTGGCCATTTTT----CACTATTTAGTTTTGTCGATGTACATTT 636
consensus_8739#3 ATTCAATTAA-ATAATTTGGCCATTTTT----CACTATTTAGTTTTGTCGATGTACATTT 281
consensus_8739#2 AGCCTTTGGA-CTAAATCAAAAACTTTTTCGGCATCCTGCAGTTTTTTCAGAG-ACTCTT 306
consensus_8739#1 TGCCTGTGAATACAACTCCACAGCTTTTTTA-AAGTTCCCAGCCTTGA-AAAATGTATTT 349
* * * ** * **** * ** ** **
consensus_8739#0 TTCAGTTTTTGATGCTGAA-TAATAACGAGATAATGAATATGCGGAAAGTGCTTC---TG 692
consensus_8739#3 TTCAGTTTTTGATGCTGAA-TAATAACGAGATAATGAATATGCGGAAAGTGCTTC---TG 337
consensus_8739#2 TTGTCTTCATGGTGTTCAGCTTCTTGCAGGTTTATGTTTAGACTTAAAGTACTCTGTGTG 366
consensus_8739#1 GCACGATCCTTGAGTTTAT----CTGCACGTTCTCGTTGTCTAGCTCGTCGCTCAGCACG 405
* * * * * * * * * ** *
consensus_8739#0 TT-TAAGAAAATCATCGGCTTCTTTGCAAGCTATACTAGCA-ACTGCATTGTCTTCTGAA 750
consensus_8739#3 AA-TGG------------------------------------------------------ 342
consensus_8739#2 TT-GGGAGGATTATGAGAAGCAGTTTATGAAGAAATATTTA-ATAATGAAAACAATCGAC 424
consensus_8739#1 TTCTTGTGCGTCCTGTGCAACCGCAGTCATAAATGCAGTCACATCACCCCCTTTTCTAGT 465
consensus_8739#0 GAAAGCCTTTGCACTAAATCAAAAACTTTTTCGGCATCCTGCAGTTTTTTCAGAGACTCT 810
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 GACAGTCAGTACGAACGAAATGGTAAGATTAAGGCGATCTGATAATGTTAAGGAGTGATA 484
consensus_8739#1 TACATCATCTGTGTNGGAAAATTTCCAAAACCAGTAACTACATTACACAAGAAAATTGCA 525
consensus_8739#0 TTTGTCTTCATGGTGTTCAGCTTCTTGCAGGTTTATGTTTAGACTTAAAGTACTCTGTGT 870
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 GCGTACNGGTTTC----------------------------------------------- 497
consensus_8739#1 TCATTTACATTAAGTGAAC----------------------------------------- 544
consensus_8739#0 GTTGGGAGGATTATGAGAAGCAGTTTATGAAGAAATCTGGATGAAAAAATAAAAGAAAAA 930
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 ------------------------------------------------------------
consensus_8739#1 ------------------------------------------------------------
consensus_8739#0 GTGAGCCGGCGACTCTGAGTACATGTGATACACTTACATTTAATAATGAAAACAATCGAC 990
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 ------------------------------------------------------------
consensus_8739#1 ------------------------------------------------------------
consensus_8739#0 GACAGTCAGTACGAACGAAATGGTAAGATTAAGGCGATCTGATAATGTTAAGGAGTTGAT 1050
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 ------------------------------------------------------------
consensus_8739#1 ------------------------------------------------------------
consensus_8739#0 AGCGTACGGTTTCGAATGCGTCACAATCACACAAACCGCGCACAACANACTGTCCCGTNC 1110
consensus_8739#3 ------------------------------------------------------------
consensus_8739#2 ------------------------------------------------------------
consensus_8739#1 ------------------------------------------------------------
consensus_8739#0 TTTN 1114
consensus_8739#3 ----
consensus_8739#2 ----
consensus_8739#1 ----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||