cluster # 8741

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Schistosoma mansoni
cluster # 8741 cluster # 8741 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8741#0 length = 886 sequences # 5

consensus_8741#1 length = 427 sequences # 2

consensusID : consensus_8741#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 886
fasta sequence

                              [TATCTCCCTGTCGCTTTTATTTCTTCATTAACACCAACTTTTACTGGAACTAACTCATTAATTACACATTTGTATTCAACTGTGGAATCAGCCATTAGTGGAGTATTTGTTGCAACATTAAAATTGGCTTTATTTTATGGTTTATATACATCACTTACTCATATTATATTTGGATTAGATCTTGTAATAATTCCATCTGTATTGGCTGCTATATTAGGTGCTGTCCCAATTATCGGCACTTATTGGGCTGTTCTACCTGGTGCAATCGAAATTATTATAATTCGTCAGTCATTATCTCAAGCTGGTCTCCTCATATTTTTCCATGTATTACCGACCTATGTCGTTGATGTTTCAGTTTATAGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTTTGGCGATTGCTGGTGGAATATACTGTCAAGGTCCTGAAGGTGCCATAATTGGTCCTATTTTACTATGTTGTTTTTTGGTTGGGATAAATATGTTTCGTTGGGCGATGGATTCTAGTAAAAATGCTTTGGCTGCCGATCAATGTGAATATGACTCTCACTGCTCGCCTCCTAACTCTCCTACTACAGTTCATACTTATAAAGCTTGTAATTCATCAGTCACTTCCGATCGTTTCCACGATGTANACTCATTTAACAAGTATTCCAACCCATCTACAAAGTTTCGTAGACCAATCTTCAAACGCAGACCAAAATACCGGTTTAATAAAAATTCATTTTCTATGCCAGACATTTCGGACATATCTGATGAGTCATTTCAAACTCCACAAATTAAACCTCACACAACAAAGTTGANTTCACCTGTATCAAGTATACATTNTGNTGCACATTCATCAACTCCTGCACATGCATATATACCTTGATTTANAT]

[+] EMBL CD194911             [TATCTCCCTGTCGCTTTTATTTCTTCATTAACACCAACTTTTACTGGAACTAACTCATTAATTACACATTTGTATTCAACTGTGGAATCAGCCATTAGTGGAGTATTTGTTGCAACATTAAAATTGGCTTTATTTTATGGTTTATATACATCACTTACTCATATTATATTTGGATTAGATCTTGTAATAATTCCATCTGTATTGGCTGCTATATTAGGTGCTGTCCCAATTATCGGCACTTATTGGGCTGTTCTACCTGGTGCAATCGAAATTATTATAATTCGTCAGTCATTATCTCAAGCTGGTCTCCTCATATTTTTCCATGTATTACCGACCTATGTCGTTGATGTTTCAGTTTATAGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTTTGGCGATTGCTGGTGGAATATACTGTCAAGGTCCTGAAGGTGCCATAATTGGTCCTATTTTACTATGTTGTTTTTTGGTTGGGATAAATATGTTTCGTTGGGCGATGGATTCTAGTAAAAATGCTTTGGCTGCCGATCAATGTGAATATGACTCTCACTG                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD195216             [                                                                                         agcttgTATTGGAGTATTTGTTGCAACATTAAAATTGGCTTTATTTTATGGTTTATATACATCACTTACTCATATTATATTTGGATTAGATCTTGTAATAATTCCATCTGTATTGGCTGCTATATTANGTGCTGTCCCAATTATCGGCACTTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD180635             [                                                                                                                      TANAATTGGCTNTATNNTATGGTTTATATACATCACTTACTCATATTATATNTGGATTAGATCTTGTAATAATTCCATCTGTATTGGCTGCTATATTAGGTGCTGTCCCAATTATCGGCACTTATTGGGCTGTTCTACCTGGTGCAATCGAAATTATTATAATTCGTCAGTCATTATCTCAAGCTGGTCTCCTCATATTTTTCCATGTATTACCGACCTATGTCGTTGATGTTTCAGTTTATAGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD078454             [                                                                                                                                          GGTTTATATACATCACTTACTCATATTATATTTGGATTAGATCTTGTAATAATTCCATCTGTATTGGCTGCTATATTAGGTGCTGTCCCAATTATCGGCACTTATTGGGCTGTTCTACCTGGTGCAATCGAAATTATTATAATTCGTCAGTCATTATCTCAAGCTGGTCTCCTCATATTTTTCCATGTATTACCGACCTATGTCGTTGATGTTTCAGTTTATAGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTTTGGCGATTGCTGGTGGAATATACTGTCAAGGTCCTGAAGGTGCCATAATTGGTCCTATTTTACTATGTTGTTTTTTGGTTGGGATAAATATGTTTCGTTGGGCGATGGATTCTAGTAAAAATGCTTTGGCTGCCGATCAATGTGAATATGACTCTCACTGCTCGCCTCCTAACTCTCCTACTACAGTTCATACTTATAAAGCTTGTAATTCATCAGTCACTTCCGATCGTTTCCACGATGTANACTCATTTAACAAGTATTCCAACCCATCTACAAAGTTTCGTA                                                                                                                                                                                                         ]
[+] EMBL SMRAP129             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCGTTTCCACGATGTAAACTCATTTAACAAGTATTCCAACCCATCTACAAAGTTTCGTAGACCAATCTTCAAACGCAGACCAAAATACCGGTTTAATAAAAATTCATTTTCTATGCCAGACATTTCGGACATATCTGATGAGTCATTTCAAACTCCACAAATTAAACCTCACACAACAAAGTTGANTTCACCTGTATCAAGTATACATTNTGNTGCACATTCATCAACTCCTGCACATGCATATATACCTTGATTTANAT]




>consensus_8741#0
TATCTCCCTGTCGCTTTTATTTCTTCATTAACACCAACTTTTACTGGAACTAACTCATTA
ATTACACATTTGTATTCAACTGTGGAATCAGCCATTAGTGGAGTATTTGTTGCAACATTA
AAATTGGCTTTATTTTATGGTTTATATACATCACTTACTCATATTATATTTGGATTAGAT
CTTGTAATAATTCCATCTGTATTGGCTGCTATATTAGGTGCTGTCCCAATTATCGGCACT
TATTGGGCTGTTCTACCTGGTGCAATCGAAATTATTATAATTCGTCAGTCATTATCTCAA
GCTGGTCTCCTCATATTTTTCCATGTATTACCGACCTATGTCGTTGATGTTTCAGTTTAT
AGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTTTGGCGATTGCTGGTGGAATA
TACTGTCAAGGTCCTGAAGGTGCCATAATTGGTCCTATTTTACTATGTTGTTTTTTGGTT
GGGATAAATATGTTTCGTTGGGCGATGGATTCTAGTAAAAATGCTTTGGCTGCCGATCAA
TGTGAATATGACTCTCACTGCTCGCCTCCTAACTCTCCTACTACAGTTCATACTTATAAA
GCTTGTAATTCATCAGTCACTTCCGATCGTTTCCACGATGTANACTCATTTAACAAGTAT
TCCAACCCATCTACAAAGTTTCGTAGACCAATCTTCAAACGCAGACCAAAATACCGGTTT
AATAAAAATTCATTTTCTATGCCAGACATTTCGGACATATCTGATGAGTCATTTCAAACT
CCACAAATTAAACCTCACACAACAAAGTTGANTTCACCTGTATCAAGTATACATTNTGNT
GCACATTCATCAACTCCTGCACATGCATATATACCTTGATTTANAT

consensusID : consensus_8741#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 427
fasta sequence

                              [ACGGCTCACGGAACTTTAACAAGATACACAGACAGCGAAAAAATGATTTATTTGAAATAAAATCTCTATATTCTTTATCCTTATGGTATGTATGTGACCTATGTCGTTGATGTTTCAGTTTATAGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTTTGGCGATTGCTGGTGGAATATACTGTCAAGGTCCTGAAGGTGCCATAATTGGTCCTATTTTACTATGTTGTTTTTTGGTTGGGATAAATATGTTTCGTTGGGCGATGGATTCTAGTAAAAATGCTTTGGCTGCCGATCAATGTGAATATGACTCTCACTGCTCGCCTCCTAACTCTCCTACTACAGTTCATACTTATAAAGCTTGTAATTCATCAGTCACTTCCGATCGTTTCCACGATGTAAACTCATTTAACAAGTATTCCA]

[+] EMBL CD128221             [ACGGCTCACGGAACTTTAACAAGATACACAGACAGCGAAAAAATGATTTATTTGAAATAAAATCTCTATATTCTTTATCCTTATGGTATGTATGTGACCTATGTCGTTGATGTTTCAGTTTATAGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTTTGGCGATTGCTGGTGGAATATACTGTCAAGGTCCTGAAGGTGCCATAATTGGTCCTATTTTACTATGTTGTTTTTTGGTTGGGATAAATATGTTTCGTTGGGCGATGGATTCTAGTAAAAATGCTTTGGCTGCCGATCAATGTGAATATGACTCTCACTGCTCGCCTCCTAACTCTCCTACTACAGTTCATACTTATAAAGCTTGTAATTCATCAGTCACTTCCGATCGTTTCCACGATGTAAACTCATTTAACAAGTATTCCA]
[+] EMBL CD082780             [                                                                                                                                                                                                                                                  TGGGATAAATATGCTTCGTTGGGCGATGGATTCTACTAAAAATGCTTTGGCTGCCGATCAATGTGAATATGACTCTCACTGCTCGCCTCCTAACTCTCCTACTACAGTTCATACTTATAAAGCTTGAAATTCATCAATCACTTCCGATCGGTTCCACGATGTAAACTCATT              ]




>consensus_8741#1
ACGGCTCACGGAACTTTAACAAGATACACAGACAGCGAAAAAATGATTTATTTGAAATAA
AATCTCTATATTCTTTATCCTTATGGTATGTATGTGACCTATGTCGTTGATGTTTCAGTT
TATAGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTTTGGCGATTGCTGGTGGA
ATATACTGTCAAGGTCCTGAAGGTGCCATAATTGGTCCTATTTTACTATGTTGTTTTTTG
GTTGGGATAAATATGTTTCGTTGGGCGATGGATTCTAGTAAAAATGCTTTGGCTGCCGAT
CAATGTGAATATGACTCTCACTGCTCGCCTCCTAACTCTCCTACTACAGTTCATACTTAT
AAAGCTTGTAATTCATCAGTCACTTCCGATCGTTTCCACGATGTAAACTCATTTAACAAG
TATTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8741#0      TATCTCCCTGTCGCTTTTATTTCTTCATTAACACCAACTTTTACTGGAACTAACTCATTA 60
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      ATTACACATTTGTATTCAACTGTGGAATCAGCCATTAGTGGAGTATTTGTTGCAACATTA 120
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      AAATTGGCTTTATTTTATGGTTTATATACATCACTTACTCATATTATATTTGGATTAGAT 180
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      CTTGTAATAATTCCATCTGTATTGGCTGCTATATTAGGTGCTGTCCCAATTATCGGCACT 240
consensus_8741#1      ------------------------------------------------------ACGGCT 6
                                                                                **

consensus_8741#0      TATTGGGCTGTTCTACCTGGTGCAATCGAAATTATTATAATTCGTCAGTCATTATCTCAA 300
consensus_8741#1      CACGGAACTTTAACAAGATACACAGACAGCGAAAAAATGATTTATTTGAAATAAAATC-- 64
                       *  *  ** *   *       **  *      *  ** ***  *  *  ** *  **  

consensus_8741#0      GCTGGTCTCCTCATATTTTTCCATGTATTACCGACCTATGTCGTTGATGTTTCAGTTTAT 360
consensus_8741#1      TCTATATTCTTTAT-CCTTATGGTATGTATGTGACCTATGTCGTTGATGTTTCAGTTTAT 123
                       **    ** * **   **    * * *    ****************************

consensus_8741#0      AGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTTTGGCGATTGCTGGTGGAATA 420
consensus_8741#1      AGAGAAATTAAAGGAGCGGGTCATCCTTATTTTACTGGTTTGGCGATTGCTGGTGGAATA 183
                      ************************************************************

consensus_8741#0      TACTGTCAAGGTCCTGAAGGTGCCATAATTGGTCCTATTTTACTATGTTGTTTTTTGGTT 480
consensus_8741#1      TACTGTCAAGGTCCTGAAGGTGCCATAATTGGTCCTATTTTACTATGTTGTTTTTTGGTT 243
                      ************************************************************

consensus_8741#0      GGGATAAATATGTTTCGTTGGGCGATGGATTCTAGTAAAAATGCTTTGGCTGCCGATCAA 540
consensus_8741#1      GGGATAAATATGTTTCGTTGGGCGATGGATTCTAGTAAAAATGCTTTGGCTGCCGATCAA 303
                      ************************************************************

consensus_8741#0      TGTGAATATGACTCTCACTGCTCGCCTCCTAACTCTCCTACTACAGTTCATACTTATAAA 600
consensus_8741#1      TGTGAATATGACTCTCACTGCTCGCCTCCTAACTCTCCTACTACAGTTCATACTTATAAA 363
                      ************************************************************

consensus_8741#0      GCTTGTAATTCATCAGTCACTTCCGATCGTTTCCACGATGTANACTCATTTAACAAGTAT 660
consensus_8741#1      GCTTGTAATTCATCAGTCACTTCCGATCGTTTCCACGATGTAAACTCATTTAACAAGTAT 423
                      ****************************************** *****************

consensus_8741#0      TCCAACCCATCTACAAAGTTTCGTAGACCAATCTTCAAACGCAGACCAAAATACCGGTTT 720
consensus_8741#1      TCCA-------------------------------------------------------- 427
                      ****                                                        

consensus_8741#0      AATAAAAATTCATTTTCTATGCCAGACATTTCGGACATATCTGATGAGTCATTTCAAACT 780
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      CCACAAATTAAACCTCACACAACAAAGTTGANTTCACCTGTATCAAGTATACATTNTGNT 840
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      GCACATTCATCAACTCCTGCACATGCATATATACCTTGATTTANAT 886
consensus_8741#1      ----------------------------------------------