cluster # 8742

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Schistosoma mansoni
cluster # 8742 cluster # 8742 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8742#0 length = 836 sequences # 6

consensus_8742#1 length = 299 sequences # 1

consensusID : consensus_8742#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 836
fasta sequence

                              [AGCATTCTGATTGTGCTTTCATGGTGGATAATGAAGCCATTTACGATATATGCAGACGTAATTTGGACATCGAACGACCGACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACGAGCTGTCTGTATGTTAAGCAACACTACAGCTATTGCTGAAGCTTGGGCACGTCTAGATCACAAATTTGACCTAATGTATGCTAAAAGAGCATTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAGGTGAATTTTCGGAGGCTCGTGAAGATTTGGCAGCTTTAGAA-AAAGATTATGAAGAAGTTGGTGTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA]

[+] EMBL CD078252             [AGCATTCTGATTGTGCTTTCATGGTGGATAATGAAGCCATTTACGATATATGCAGACGTAATTTGGACATCGAACGACCGACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACGAGCTGTCTGTATGTTAAGCAACACTACAGCTATTGCTGAAGCTTGNGCACGTCTAGATCACANATTTGACCTAATGTATGCTANAAGAGCAT                                                                                                                                                                                                                     ]
[+] EMBL CD078333             [AGCATTCTGATTGTGCTTTCATGGTGGATAATGAAGCCATTTACGATATATGCAGACGTAATTTGGACATCGAACGACCGACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAAGTGTTGTACCAGGTGGTGACTTAGCCAAAG                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD154407             [                                                                               GACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTCGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACG                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD154665             [                                                                               GATTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCAGTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTCAAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTATTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTTTTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCTGTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAAAAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTAACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACG                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL SMAA40574            [                                                                                                                                                                                                                                                                                                                                                                                                                                         ggggGAACAATTCAATTTGTAGACTGGGGTCCAACTGGATTCAAAGTTGGTATTAATTACCAACCACCAACTGTTTTACCAGGTGGTGACTTAGCCAAAGTACAACGAGCTGTCTGTATGTTAAGCAACACTACAGCTATTGCTGAAGCTTGGGCACGTCTAGATCACAAATTTGACCTAATGTATGCTAAAAGAGCATTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAGGTGAATTTTCGGAGGCTCGTGAAGATTTGGCAGCTTTAGAA AAAGATTATGAAGAAGTTGGTGTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA]
[-] EMBL CD072891             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTCAAAGTTGGTATTAACTACCAACCCCCAACTGTTGTACCAGGTGGTGGCTTAGCCAAAGTACAACGAGCTGTCTGTATGTTAAGCAACCCTACAGCTATTGCTGAAGCTTGGGCACGTTTAGATCCCAAATTTGGCCTAATGTATGCTAAAAGAGCATTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAGGTGAATTTTCGGAGGCTCGTGAAGATTTGGCAGCTTTAGAAGAAAGATTATGAAGAAGTTGGTGTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATTTAAATAAATAAACAGTA]




>consensus_8742#0
AGCATTCTGATTGTGCTTTCATGGTGGATAATGAAGCCATTTACGATATATGCAGACGTA
ATTTGGACATCGAACGACCGACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCA
GTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTC
AAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTA
TTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTT
TTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCT
GTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAA
AAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTA
ACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACGAGCTGTCT
GTATGTTAAGCAACACTACAGCTATTGCTGAAGCTTGGGCACGTCTAGATCACAAATTTG
ACCTAATGTATGCTAAAAGAGCATTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAG
GTGAATTTTCGGAGGCTCGTGAAGATTTGGCAGCTTTAGAAAAAGATTATGAAGAAGTTG
GTGTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTA
TTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA

consensusID : consensus_8742#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [GCACCCCCTTGGGCCGATTGGTGACGGGCCCCCCCCTGAAGCTTGGGCACGCTAGAACACAAATTGACCTAATGTATGCTCAAAGAGCATTGTACATTGGTATGTCGTGAAGTTATGGAAGAAGGTGAATTTCGGAGGCTCGTGAAGATTGGCAGCTTTAGAAAAAGATTATGAAGAAGTTGGTGTTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA]

[-] EMBL AI882631             [GCACCCCCTTGGGCCGATTGGTGACGGGCCCCCCCCTGAAGCTTGGGCACGCTAGAACACAAATTGACCTAATGTATGCTCAAAGAGCATTGTACATTGGTATGTCGTGAAGTTATGGAAGAAGGTGAATTTCGGAGGCTCGTGAAGATTGGCAGCTTTAGAAAAAGATTATGAAGAAGTTGGTGTTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA]




>consensus_8742#1
GCACCCCCTTGGGCCGATTGGTGACGGGCCCCCCCCTGAAGCTTGGGCACGCTAGAACAC
AAATTGACCTAATGTATGCTCAAAGAGCATTGTACATTGGTATGTCGTGAAGTTATGGAA
GAAGGTGAATTTCGGAGGCTCGTGAAGATTGGCAGCTTTAGAAAAAGATTATGAAGAAGT
TGGTGTTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCT
TTATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8742#0      AGCATTCTGATTGTGCTTTCATGGTGGATAATGAAGCCATTTACGATATATGCAGACGTA 60
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      ATTTGGACATCGAACGACCGACTTATACCAATCTGAACCGTTTAATCGGACAAATCGTCA 120
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      GTTCAATAACAGCATCACTTCGATTTGATGGTGCACTGAACGTTGATTTGACAGAATTTC 180
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      AAACTAATCTGGTGCCATATCCTCGTATTCATTTCCCTTTAGCTACTTATGCACCAGTTA 240
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      TTTCCGCCGAGAAAGCATACCATGAACAGTTAAGCGTGGCAGAGATTACTAATGCTTGTT 300
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      TTGAACCCGCTAATCAAATGGTAAAATGTGATCCACGTCACGGAAAGTATATGGCTTGCT 360
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      GTATGTTATATCGTGGAGATGTTGTACCTAAAGACGTCAACGCTGCTATAGCTACAATAA 420
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      AAACCAAGAGAACAATTCAATTTGTAGACTGGTGTCCAACTGGATTCAAAGTTGGTATTA 480
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      ACTACCAACCACCAACTGTTGTACCAGGTGGTGACTTAGCCAAAGTACAACGAGCTGTCT 540
consensus_8742#1      ---------------------------------------------------GCACCCCCT 9
                                                                         *  *   **

consensus_8742#0      GTATGTTAAGCAACACTACAGCTATTGCTGAAGCTTGGGCACGTCTAGATCACAAATTTG 600
consensus_8742#1      -TGGGCCGATTGGTGACGGGCCCCCCCCTGAAGCTTGGGCACG-CTAGAACACAAATT-G 66
                       *  *   *            *     **************** ***** ******** *

consensus_8742#0      ACCTAATGTATGCTAAAAGAGCATTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAG 660
consensus_8742#1      ACCTAATGTATGCTCAAAGAGCATT-GTACATTGGTATGTCG-TGAAGTTATGGAAGAAG 124
                      ************** ********** **************** ***** ***********

consensus_8742#0      GTGAATTTTCGGAGGCTCGTGAAGATTTGGCAGCTTTAGAAAAAGATTATGAAGAAGTTG 720
consensus_8742#1      GTGAATTT-CGGAGGCTCGTGAAGATT-GGCAGCTTTAGAAAAAGATTATGAAGAAGTTG 182
                      ******** ****************** ********************************

consensus_8742#0      GTGT-GGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTT 779
consensus_8742#1      GTGTTGGACAGTGTCGATGCCGAAGGTGAAAATGAAGAAGGTGAAGAATATTAGTTCTTT 242
                      **** *******************************************************

consensus_8742#0      ATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA 836
consensus_8742#1      ATTGAAAATGAATTCTCTGAACCCATAAGTTAAAAATATCTAAATAAATAAACAGTA 299
                      *********************************************************