cluster # 8743

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Schistosoma mansoni
cluster # 8743 cluster # 8743 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8743#0 length = 850 sequences # 3
consensus_8743#1 length = 528 sequences # 1

consensus_8743#2 length = 495 sequences # 1
consensus_8743#3 length = 212 sequences # 2

consensusID : consensus_8743#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 850
fasta sequence

                              [GAGCCTTTAATTCGGCACGCAGCTTAATCTCAGTCGGGCTCTTGGTGATCATAGTTATAAGCAAACTCCAAATATTCCATTAACAGATCAAATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTTTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAACAAAAACACTACAAACAATCATTCGAATCCCGCCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTTTTATAGTTCGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAAAACACATCGACGACAACTAAACTATCACCAAGGAAACGACCAATTTCTCATGAACTCTCCGAGGATAATAATCATGTTCATGATGATGAAACACATATTATTGTTATAGATACCAATGGAAACAATTCATCTCCTACCACTGATGATAGTCAGGCGAC-ACAATGAAACGTCCAAAATTGGAATCTCACGAATCGGAGAATTCCACAGAAGCAACAATTACAAATGGGACAGGTAGCAGCGTTTACTAGTAATGTTATGTATTTTATGAAGTGGAAATACAGGAAACAATGGCAGTTG]

[+] EMBL CD081739             [GAGCCTTTAATTCGGCACGCAGCTTAATCTCAGTCGGGCTCTTGGTGATCATAGTTATAAGCAAACTCCAAATATTCCATTAACAGATCAAATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTTTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAACAAAAACACTACAAACAATCATTCGAATCCCGCCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTTTTATAGTTCGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAAAACACATCGACGACAACTAAACTATCACCAAGGAAACGACCAATTTCTCATGAACTCTCCGAGGATAATAATCATGTTCATGATGATGAAACACATATTATTGTTATAGATACCAATGGAAACAATTCATCTCCTACCACTGATGATAGTCAGGCGAC ACAATGAAACGTCCAAAATTGGAATCTCACGAATCGGAGAATTCCACAGAAGCAACAATTACAAATGGGACAGGTAGCAGCGTTTACTAGTAATGTTATGTATTTTATGAAGTGGAAATACAGGAAACAATGGCAGTTG]
[-] EMBL CD171508             [                                                                                                    CCATCNCCAGATGTTACTGANATAGA TTAATTCCATCAGCGGATGAATTNTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAGGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAACAAAAACACTACAAACAATCATTCGAATCCCGCCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTT                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD190909             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAAAACACATCGACGACAACTAAACTATCACCAAGGAAACGACCAATTTCTCATGAACTCTCCGAGGATAATAATCATGTTCATGATGATGAAACACATATTATTGTTATAGATACCAATGGAAACAATTCATCTCCTACCACTGATGATAGTCAGGCGACAACAATGAAACGTCCAAAATTGGAATCTCACGAATCGGAG                                                                                                    ]




>consensus_8743#0
GAGCCTTTAATTCGGCACGCAGCTTAATCTCAGTCGGGCTCTTGGTGATCATAGTTATAA
GCAAACTCCAAATATTCCATTAACAGATCAAATGATCACACCATCCCCAGATGTTACTGA
AATAGATTTAATTCCATCAGCGGATGAATTTTTAGTTATTGCATGTGATGGAGTATGGAA
TTCAATGACAAGTCAAGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTAT
AAACAATAACAGTAGTAACAAAAACACTACAAACAATCATTCGAATCCCGCCGCTGATGT
CAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAG
AAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTAC
AGGTTGTGATAATATGACCTGTTTTATAGTTCGTTTTGACAATCTTCCTGGTTGGGTTGA
ATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAAC
GAACAACGCTAAAAACACATCGACGACAACTAAACTATCACCAAGGAAACGACCAATTTC
TCATGAACTCTCCGAGGATAATAATCATGTTCATGATGATGAAACACATATTATTGTTAT
AGATACCAATGGAAACAATTCATCTCCTACCACTGATGATAGTCAGGCGACACAATGAAA
CGTCCAAAATTGGAATCTCACGAATCGGAGAATTCCACAGAAGCAACAATTACAAATGGG
ACAGGTAGCAGCGTTTACTAGTAATGTTATGTATTTTATGAAGTGGAAATACAGGAAACA
ATGGCAGTTG

consensusID : consensus_8743#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [CAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAGTAAGACTGATAGTTTTTTTCCAGATTTTGTATCTGAGAGAACTGGCAAATAATATCGCTCTTGCTTTGTACAAAAGGAGATGTAGTTTAGTTGATTGTATAAGTTTTTATTACAAGTCTGATGGTGTTGAACACGTTTCTCTTTTTTGTAGTATATTCATACTTTAGATAGATGCTGTTTTTGTTTCAAATAATCGGCTCTAGATTTGTATCCGCACTTTACCATTGAATTTAATGTTTGTTTTTCTTTATCTTATAGATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAATACACATCGACGACAA]

[+] EMBL AI977332             [CAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAGTAAGACTGATAGTTTTTTTCCAGATTTTGTATCTGAGAGAACTGGCAAATAATATCGCTCTTGCTTTGTACAAAAGGAGATGTAGTTTAGTTGATTGTATAAGTTTTTATTACAAGTCTGATGGTGTTGAACACGTTTCTCTTTTTTGTAGTATATTCATACTTTAGATAGATGCTGTTTTTGTTTCAAATAATCGGCTCTAGATTTGTATCCGCACTTTACCATTGAATTTAATGTTTGTTTTTCTTTATCTTATAGATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAATACACATCGACGACAA]




>consensus_8743#1
CAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAG
AAAAATTTGTCATGAAGTAAGACTGATAGTTTTTTTCCAGATTTTGTATCTGAGAGAACT
GGCAAATAATATCGCTCTTGCTTTGTACAAAAGGAGATGTAGTTTAGTTGATTGTATAAG
TTTTTATTACAAGTCTGATGGTGTTGAACACGTTTCTCTTTTTTGTAGTATATTCATACT
TTAGATAGATGCTGTTTTTGTTTCAAATAATCGGCTCTAGATTTGTATCCGCACTTTACC
ATTGAATTTAATGTTTGTTTTTCTTTATCTTATAGATTTTCGATCATTGTTTGGCGCCGA
ATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGTTTTGACA
ATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGTGTATTAATTG
ATTCAACTACCATATCAACGAACAACGCTAAATACACATCGACGACAA

consensusID : consensus_8743#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence

                              [GTTGCAGCTGGTGGAACTGTAACGCGTGATGGCCGAGTAAATGGTGGTCTTAATCTCAGTCGGGCTCTTGGTGATCATAGTTATAAGCAAACTCCAAATATTCCATTAACAGATCAAATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTTTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAATAAAAACACTACAAACAATCATTCGAATCCCACCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGTTTTGACAATCTTCCT]

[+] EMBL BF936117             [GTTGCAGCTGGTGGAACTGTAACGCGTGATGGCCGAGTAAATGGTGGTCTTAATCTCAGTCGGGCTCTTGGTGATCATAGTTATAAGCAAACTCCAAATATTCCATTAACAGATCAAATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTTTTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTTATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAATAAAAACACTACAAACAATCATTCGAATCCCACCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGTTTTGACAATCTTCCT]




>consensus_8743#2
GTTGCAGCTGGTGGAACTGTAACGCGTGATGGCCGAGTAAATGGTGGTCTTAATCTCAGT
CGGGCTCTTGGTGATCATAGTTATAAGCAAACTCCAAATATTCCATTAACAGATCAAATG
ATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTTTTA
GTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTTATT
CAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAATAAAAACACTACAAAC
AATCATTCGAATCCCACCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTCGAT
AAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGTTTG
GCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTTCGT
TTTGACAATCTTCCT

consensusID : consensus_8743#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 212
fasta sequence

                              [AATGCACTACTGTATGTCAATTTCTTTAATTTTCTCTCCAAAAATTAAACAAACAAACAAAAAAACCAATGACAAGGATAGAGAGTGAGAGCAATCGACAAGGATACTACTATAACCTTGGTAACGGACGAAACGAACACCATTGAGAATAAAGACACGTAGAGAATTATTTTAAAATCTTTGTCATTTTTTGGGCAGTTGATTGCCTGAAT]

[-] EMBL BF936099             [AATGCACTACTGTATGTCAATTTCTTTAATTTTCTCTCCAAAAATTAAACAAACAAACAAAAAAACCAATGACAAGGATAGAGAGTGAGAGCAATCGACAAGGATACTACTATAACCTTGGTAACGGACGAAACGAACACCATTGAGAATAAAGACACGTAGAGAATTATTTTAAAATC                                 ]
[+] EMBL CD075473             [                                                                      GACAAGGATAAAAAATGAGACTCATCGACAAGGATACTACTATAACCTTGGTAACGGACGAAACGAACACCATTGAGAATAAAGACACGTAGAGAATTATTTTAAAATCTTTGTCATTTTTTGGGCAGTTGATTGCCTGAAT]




>consensus_8743#3
AATGCACTACTGTATGTCAATTTCTTTAATTTTCTCTCCAAAAATTAAACAAACAAACAA
AAAAACCAATGACAAGGATAGAGAGTGAGAGCAATCGACAAGGATACTACTATAACCTTG
GTAACGGACGAAACGAACACCATTGAGAATAAAGACACGTAGAGAATTATTTTAAAATCT
TTGTCATTTTTTGGGCAGTTGATTGCCTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8743#0      --------------------------GAGCCTTTAATTCGGCAC-GCAGCTTAATCTCAG 33
consensus_8743#2      GTTGCAGCTGGTGGAACTGTAACGCGTGATGGCCGAGTAAATGG-TGGTCTTAATCTCAG 59
consensus_8743#1      --------------------------------------CAATGA-AAATGATAATGATCG 21
consensus_8743#3      ----------------------------------AATGCACTACTGTATGTCAATTTCTT 26
                                                                          ***     

consensus_8743#0      TCGGGCTCTTGGTGA-TCATAGTTATAAG-CAAACTCCAAATATTCCATTAACAGATCAA 91
consensus_8743#2      TCGGGCTCTTGGTGA-TCATAGTTATAAG-CAAACTCCAAATATTCCATTAACAGATCAA 117
consensus_8743#1      TGGTGAGGTCGATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAGTAAG 81
consensus_8743#3      TAATTTTCTCTCCAA---AAATTAAACAAACAAAC--AAAAAAACCAATGACAAGGATAG 81
                      *       *     *     * *         **     ** *     * *  *    * 

consensus_8743#0      ATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTT 151
consensus_8743#2      ATGATCACACCATCCCCAGATGTTACTGAAATAGATTTAATTCCATCAGCGGATGAATTT 177
consensus_8743#1      ACTGATAGTTTTTTTCCAGATTTTGT--------ATCTGAGAGAACTGGCAAATAATATC 133
consensus_8743#3      AGAGTGAGAGCAATCGACAAGGATACTA------CTATAACCTTGGTAACGGACGAAACG 135
                      *     *            *   *           * * *         *  *  *    

consensus_8743#0      TTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTT 211
consensus_8743#2      TTAGTTATTGCATGTGATGGAGTATGGAATTCAATGACAAGTCAAGAGGTTGTAGAATTT 237
consensus_8743#1      GCTCTTGCTTTGTACAAAAGGAGATGTAGTTTAGTTGATTGT-ATAAGTTTTTATTACAA 192
consensus_8743#3      AACACCATTGAGAATAAAGACACGTAGAG---AATTAT---TTTAAAATCTTTGTCATTT 189
                              *       *       *  *    * *      *    *   * *   *   

consensus_8743#0      ATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAACAAAAACACTACA 271
consensus_8743#2      ATTCAGGATCGTTTACATCCTCCGACTATAAACAATAACAGTAGTAATAAAAACACTACA 297
consensus_8743#1      GTCTGATGGTGTTGAACACGTTTCTCT--------TTTTTGTAGTA-TATTCATACTTTA 243
consensus_8743#3      TTTGGGCA--GTTGATTGCCTGAAT----------------------------------- 212
                       *        *** *   * *                                       

consensus_8743#0      AACAATCATTCGAATCCCGCCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTC 331
consensus_8743#2      AACAATCATTCGAATCCCACCGCTGATGTCAATGAAAATGATAATGATCGTGGTGAGGTC 357
consensus_8743#1      GATAG--------ATGCTGTTTTTGTTTCAAATAATCGGCTCTAGATTTGTATCCGCACT 295
consensus_8743#3      ------------------------------------------------------------
                                                                                  

consensus_8743#0      GATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGT 391
consensus_8743#2      GATAAATTGGATTCGTCTGATCAATTAAGAAAAATTTGTCATGAAATTTTCGATCATTGT 417
consensus_8743#1      TTACCATTGAATTTAA-TGTTTGTTTTTCTTTATCTTAT----AGATTTTCGATCATTGT 350
consensus_8743#3      ------------------------------------------------------------
                                                                                  

consensus_8743#0      TTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTTTTATAGTT 451
consensus_8743#2      TTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTT 477
consensus_8743#1      TTGGCGCCGAATACCGACGGTGACGGTACAGGTTGTGATAATATGACCTGTATTATAGTT 410
consensus_8743#3      ------------------------------------------------------------
                                                                                  

consensus_8743#0      CGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGT 511
consensus_8743#2      CGTTTTGACAATCTTCCT------------------------------------------ 495
consensus_8743#1      CGTTTTGACAATCTTCCTGGTTGGGTTGAATATTACGAAAATAATAATAATAAAGGTAGT 470
consensus_8743#3      ------------------------------------------------------------
                                                                                  

consensus_8743#0      GTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAAAACACATCGACGACAACT 571
consensus_8743#2      ------------------------------------------------------------
consensus_8743#1      GTATTAATTGATTCAACTACCATATCAACGAACAACGCTAAATACACATCGACGACAA-- 528
consensus_8743#3      ------------------------------------------------------------
                                                                                  

consensus_8743#0      AAACTATCACCAAGGAAACGACCAATTTCTCATGAACTCTCCGAGGATAATAATCATGTT 631
consensus_8743#2      ------------------------------------------------------------
consensus_8743#1      ------------------------------------------------------------
consensus_8743#3      ------------------------------------------------------------
                                                                                  

consensus_8743#0      CATGATGATGAAACACATATTATTGTTATAGATACCAATGGAAACAATTCATCTCCTACC 691
consensus_8743#2      ------------------------------------------------------------
consensus_8743#1      ------------------------------------------------------------
consensus_8743#3      ------------------------------------------------------------
                                                                                  

consensus_8743#0      ACTGATGATAGTCAGGCGACACAATGAAACGTCCAAAATTGGAATCTCACGAATCGGAGA 751
consensus_8743#2      ------------------------------------------------------------
consensus_8743#1      ------------------------------------------------------------
consensus_8743#3      ------------------------------------------------------------
                                                                                  

consensus_8743#0      ATTCCACAGAAGCAACAATTACAAATGGGACAGGTAGCAGCGTTTACTAGTAATGTTATG 811
consensus_8743#2      ------------------------------------------------------------
consensus_8743#1      ------------------------------------------------------------
consensus_8743#3      ------------------------------------------------------------
                                                                                  

consensus_8743#0      TATTTTATGAAGTGGAAATACAGGAAACAATGGCAGTTG 850
consensus_8743#2      ---------------------------------------
consensus_8743#1      ---------------------------------------
consensus_8743#3      ---------------------------------------