cluster # 8745

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Schistosoma mansoni
cluster # 8745 cluster # 8745 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8745#0 length = 683 sequences # 4

consensus_8745#1 length = 534 sequences # 3

consensusID : consensus_8745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 683
fasta sequence

                              [TTTGTCTGTTGTGATTGTGTCAGGAAGGATTCCATATTTTCGAAGAAATCCGGAAAAATTAGCTTCCCTCAGAATTCTGATCGAATTGTGGCAGTCCGAAAATCGGTTAATGAATTAAATAGAAAGATTAAAGTATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATTTTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTCTTTTTTGTC]

[+] EMBL CD114884             [TTTGTCTGTTGTGATTGTGTCAGGAAGGATTCCATATTTTCGAAGAAATCCGGAAAAATTAGCTTCCCTCAGAATTCTGATCGAATTGTGGCAGTCCGAAAATCGGTTAATGAATTAAATAGAAAGATTAAAGTATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATTTTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACAT                                                                                                 ]
[-] EMBL CD114858             [                                                                                                             ATGAATTAAATAGAAAGATTAAAGTATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGAATTGAAGAGTTGAATGTTCGGATTTCATCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATTTTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTCTTTTTTGTC]
[-] EMBL CD115025             [                                                                                                                                      ATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTCTACATATCGATAAAGAGAACATTTTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTCTTTTTTGTC]
[+] EMBL BG932410             [                                                                                                                                                                                                                                                                 CAAAAAACTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACTGATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATTTTTGCAGGCCCccct                                                                                                                                ]




>consensus_8745#0
TTTGTCTGTTGTGATTGTGTCAGGAAGGATTCCATATTTTCGAAGAAATCCGGAAAAATT
AGCTTCCCTCAGAATTCTGATCGAATTGTGGCAGTCCGAAAATCGGTTAATGAATTAAAT
AGAAAGATTAAAGTATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGA
ATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAA
ATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCAT
ACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTT
GCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACAC
GTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACT
GATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATT
TTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCA
ATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTG
CATTTGGTTGGTTCTTTTTTGTC

consensusID : consensus_8745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 534
fasta sequence

                              [AGATCTCGTTGTGCATATTTTTACATCGAAGCAGGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTC-TTTTTTGTCTGCGTTACCTCAGAGGGATGATATGGGTCGTGTGTATTTCGCAGTCATTTATGCTGTTCAC]

[+] EMBL CD145920             [AGATCTCGTTGTGCATATTTTTACATCGAAGCAGGGTAGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGA                                                                                                                                                                                                                                                       ]
[-] EMBL CD202498             [                                     AGAATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTANAATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTC TTTTTTGTCTGCGTTACCTCAGAGGGATGATATGGGTCGTGTGTATTTCGCAGTCATTTATGCTGTTCAC]
[-] EMBL CD201084             [                                                                                                                                                                 CCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTTGCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTCTTTTTTTGTCTGCGTTACCTCAGAGGGATGATATGGGTCGTGTGTATTTCGCAGTCATTTATGCTGTT   ]




>consensus_8745#1
AGATCTCGTTGTGCATATTTTTACATCGAAGCAGGGTAGAATTGAAGAGTTGAATGTTCG
GATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAAATGAATTCAGAGAAACGCAA
AAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCATACCTCATCTCAGCAACTTCT
GAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTTGCACAGAGAAAAAAGTTACT
GGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACACGTACATGATACTTATTTCGA
GGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGGCCCTGAACCCACCCCATCCAGT
CATACGGCTTTAACATATTGCTCAGTAGCAATAAGAGTTTCAACTATTTTGTTAGATGTT
TGGTTACCAGTCTCCATTCGCCGGAATTTGCATTTGGTTGGTTCTTTTTTGTCTGCGTTA
CCTCAGAGGGATGATATGGGTCGTGTGTATTTCGCAGTCATTTATGCTGTTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8745#0      TTTGTCTGTTGTGATTGTGTCAGGAAGGATTCCATATTTTCGAAGAAATCCGGAAAAATT 60
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      AGCTTCCCTCAGAATTCTGATCGAATTGTGGCAGTCCGAAAATCGGTTAATGAATTAAAT 120
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      AGAAAGATTAAAGTATACGAACCCATACTGTTCAAGTCTGTATTTCACACTTTTGGTAGA 180
consensus_8745#1      -------------------AGATCTCGTTGTGCATATTTTTACATCGAAGCAG-GGTAGA 40
                                         *   *    *** **  * * **  **  *     ******

consensus_8745#0      ATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAA 240
consensus_8745#1      ATTGAAGAGTTGAATGTTCGGATTTCGTCTCTGGAACATACGATCGAGTTTCTTACTAAA 100
                      ************************************************************

consensus_8745#0      ATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCAT 300
consensus_8745#1      ATGAATTCAGAGAAACGCAAAAAGCTACAACGTGTTCGACAAGCAATGACACGATGCCAT 160
                      ************************************************************

consensus_8745#0      ACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACGGTT 360
consensus_8745#1      ACCTCATCTCAGCAACTTCTGAAGCAGCAAGCTAATTTGGTTCGGCATTTTATCACAGTT 220
                      ******************************************************** ***

consensus_8745#0      GCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACAC 420
consensus_8745#1      GCACAGAGAAAAAAGTTACTGGTAGCTGATCTTGATATTGTAAACAGACAGATTAAACAC 280
                      ************************************************************

consensus_8745#0      GTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCGACT 480
consensus_8745#1      GTACATGATACTTATTTCGAGGAGTTACTTGGAGTTTATTTCGTGACTGACCTGTCG--- 337
                      *********************************************************   

consensus_8745#0      GATAGTTTATCTCCGGATAGGTTTGTGTGTTCACCTTTACATATCGATAAAGAGAACATT 540
consensus_8745#1      ------------------------------------------------------------
                                                                                  

consensus_8745#0      TTTGCAGGCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCA 600
consensus_8745#1      -------GCCCTGAACCCACCCCATCCAGTCATACGGCTTTAACATATTGCTCAGTAGCA 390
                             *****************************************************

consensus_8745#0      ATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTG 660
consensus_8745#1      ATAAGAGTTTCAACTATTTTGTTAGATGTTTGGTTACCAGTCTCCATTCGCCGGAATTTG 450
                      ************************************************************

consensus_8745#0      CATTTGGTTGGTTCTTTTTTGTC------------------------------------- 683
consensus_8745#1      CATTTGGTTGGTTCTTTTTTGTCTGCGTTACCTCAGAGGGATGATATGGGTCGTGTGTAT 510
                      ***********************                                     

consensus_8745#0      ------------------------
consensus_8745#1      TTCGCAGTCATTTATGCTGTTCAC 534