cluster # 8746

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8746 cluster # 8746 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8746#0 length = 845 sequences # 6

consensus_8746#1 length = 353 sequences # 1

consensusID : consensus_8746#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 845
fasta sequence

                              [GTTTCCTGGTTTGAAGCTATAAAAGTATTGCTTTTGACTGGAAATCTATATTTTGTATCTACACCCTTAAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGATAAGGGGAAAATGAGCGCTTGATTGGAGATTTTGACCTCTTAGTCAGTGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTTACTGTTAAATTTCGTTTATGGCTAATTGAATTATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGGGACTGCAC-TTCCTTAGTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCGAGCTCTCTAACGGCATCCAACATTTTCTCACAAGCTTCCTGATTTTCTTTTAAATTCTTTTTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACT-GGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTNTCATCTGTAGATTCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGATGATTAATCAAACCGAATTAAAGCTTTACAATCAACTTGACGCGTGGCTACTCCAGTCTATTATAT]

[+] EMBL CD189248             [GTTTCCTGGTTTGAAGCTATAAAAGTATTGCTTTTGACTGGAAATCTATATTTTGTATCTACACCCTTGAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGATAAGGGGAAAATGAGCGCTTGATTGGAGATTTTGACCTCTTAGTCAGTGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTTACTGTTAAATTTCGTTTATGGCTAATTGAATTATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGGGACTGCAC TTCCTTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD190016             [ctgTCCTGGTTTGAAGCTATGAAGGTATCGCTTTTGACTGGAAATCTATATTTTGTATCTACACCCTTAAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGATAAGGGGAAATTGAGCGCTTGATTGGAGATTTTGACCTCTTCGTCAATGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTCACTGTTAAATTTCGTTTATGGCTAATTGAATCATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGAGACTGCAC TTCCTTAGTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCGAGCTCTCTAACGGCATCCAACATTTTCTCACAGGCTTCCTGATTTTCTTTTAAATTTTTTTTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGNAATTTTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATAT GAGCAGGTCTTCTGACTGGGGTCATTTGCCA TATAc                                                                                                                                                                                                                                                    ]
[+] EMBL CD072308             [                                             CTATATTTTGTATCTACACCCTTAAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGATAAGGGGAAATTGAGCGCTTGATTGGAGATTTTGACCTCTTCGTCAATGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTCACTGCTAAATTTCGTTTATGGCTAATTGAATCATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAGAGCGAGACTGCACTTTCTTTAGTAGATCGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD155732             [                                                                                                            TCAAACACCGGATAAGGGGAAAATGAGCGCTTGATTGGAGATTTTGACCTCTTAGTCAGTGATGTAGTACGTCTGACTGATTTGAGACTACGCCCCATCTTTACTGTTAAATTTCGTTTATGGCTAATTGAATTATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGGGACTGCAC TTCCTTAGTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCGAGCTCTCTAACGGCATCCAACATTTTCTCACAAGCTTCCTGATTTTCTTTTAAATTCTTTTTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACT GGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTNTCATCTGTAGATTCAG                                                                                                                         ]
[-] EMBL CD183454             [                                                                                                                                                                                                                                                                        CGCGCTCTCATAGAAAAGCGGGACTGCAC TTCCTTAGTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCGAGCTCTCTAACGGCATCCAACATTTTCTCACAAGCTTCCTGATTTTCTTTTAAATTCTTTTTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACT GGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAG                                                                                                                                                                                                                         ]
[+] EMBL CD169254             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATATGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACT GGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTTTCATCTGTAGATTCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGATGATTAATCAAACCGAATTAAAGCTTTACAATCAACTTGACGCGTGGCTACTCCAGTCTATTATAT]




>consensus_8746#0
GTTTCCTGGTTTGAAGCTATAAAAGTATTGCTTTTGACTGGAAATCTATATTTTGTATCT
ACACCCTTAAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGA
TAAGGGGAAAATGAGCGCTTGATTGGAGATTTTGACCTCTTAGTCAGTGATGTAGTACGT
CTGACTGATTTGAGACTACGCCCCATCTTTACTGTTAAATTTCGTTTATGGCTAATTGAA
TTATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGGGACTGCACTTCCTTA
GTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCG
AGCTCTCTAACGGCATCCAACATTTTCTCACAAGCTTCCTGATTTTCTTTTAAATTCTTT
TTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATA
TGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGA
ATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATA
ACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCT
TTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTNTCATCTGTAGAT
TCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGAT
GATTAATCAAACCGAATTAAAGCTTTACAATCAACTTGACGCGTGGCTACTCCAGTCTAT
TATAT

consensusID : consensus_8746#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [ACTATAAGAATCGAATAGTAACTCACAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTTTCATCTGTAGATTCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGATGATTAATCAAACCGAATTAAAGCTTACAATCAACTTGACGCGTGGCTACTCCAGTCTATTATATCAAACGA]

[-] EMBL CD189278             [ACTATAAGAATCGAATAGTAACTCACAACACATATGTTAGGAATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATAACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTTTCATCTGTAGATTCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGATGATTAATCAAACCGAATTAAAGCTTACAATCAACTTGACGCGTGGCTACTCCAGTCTATTATATCAAACGA]




>consensus_8746#1
ACTATAAGAATCGAATAGTAACTCACAACACATATGTTAGGAATATTTGTTTCAGGTCTT
TTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATAACATCTGCAACACCAGGA
CCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCTTTAGGTACTGAAGTTTCT
GATTTAGTGTGGTATGTGTATTGTAAGTTTTCATCTGTAGATTCAGAGGCGCTCATTTCA
TCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGATGATTAATCAAACCGAATT
AAAGCTTACAATCAACTTGACGCGTGGCTACTCCAGTCTATTATATCAAACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8746#0      GTTTCCTGGTTTGAAGCTATAAAAGTATTGCTTTTGACTGGAAATCTATATTTTGTATCT 60
consensus_8746#1      ------------------------------------------------------------
                                                                                  

consensus_8746#0      ACACCCTTAAAATTTTCTAACTTTTTGGAACAGCAGGAGTATTCAGTATCAAACACCGGA 120
consensus_8746#1      ------------------------------------------------------------
                                                                                  

consensus_8746#0      TAAGGGGAAAATGAGCGCTTGATTGGAGATTTTGACCTCTTAGTCAGTGATGTAGTACGT 180
consensus_8746#1      ------------------------------------------------------------
                                                                                  

consensus_8746#0      CTGACTGATTTGAGACTACGCCCCATCTTTACTGTTAAATTTCGTTTATGGCTAATTGAA 240
consensus_8746#1      ------------------------------------------------------------
                                                                                  

consensus_8746#0      TTATCATGGGTAGTGCTTTTTGATCGCACTCTCATAGAAAAGCGGGACTGCACTTCCTTA 300
consensus_8746#1      ------------------------------------------------------------
                                                                                  

consensus_8746#0      GTAGATCGAATGCGATGACTAATTGGAGATGTGTTTCGACGCTGAACAATAAATGACCCG 360
consensus_8746#1      ------------------------------------------------------------
                                                                                  

consensus_8746#0      AGCTCTCTAACGGCATCCAACATTTTCTCACAAGCTTCCTGATTTTCTTTTAAATTCTTT 420
consensus_8746#1      ------------------------------------------------------------
                                                                                  

consensus_8746#0      TTTGACGGATTTCTATATTTAGTAAGGCGGTCATTTTCCAAAATCTTATTAACAGCAATA 480
consensus_8746#1      ------------------------------------------------------------
                                                                                  

consensus_8746#0      TGCAATTTTTTCAAATGACTCTTGAAATTCTGTGAAGACGGTTCAACACATATGTTAGGA 540
consensus_8746#1      -----------------ACTATAAGAATCGAATAGTAACT-CACAACACATATGTTAGGA 42
                                       *** *   ***    *    **    *****************

consensus_8746#0      ATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATA 600
consensus_8746#1      ATATTTGTTTCAGGTCTTTTATATAGAGCAGGTCTTCTGACTGGTTCATTGCCCACTATA 102
                      ************************************************************

consensus_8746#0      ACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCT 660
consensus_8746#1      ACATCTGCAACACCAGGACCCTCAAAAGGAGTATTCCGGGTATCGCTTCTTCCTGAAGCT 162
                      ************************************************************

consensus_8746#0      TTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTNTCATCTGTAGAT 720
consensus_8746#1      TTAGGTACTGAAGTTTCTGATTTAGTGTGGTATGTGTATTGTAAGTTTTCATCTGTAGAT 222
                      *********************************************** ************

consensus_8746#0      TCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGAT 780
consensus_8746#1      TCAGAGGCGCTCATTTCATCACCATTCGAAAACAAATCAAGCTCAAAATTTTCTTTAGAT 282
                      ************************************************************

consensus_8746#0      GATTAATCAAACCGAATTAAAGCTTTACAATCAACTTGACGCGTGGCTACTCCAGTCTAT 840
consensus_8746#1      GATTAATCAAACCGAATTAAAGCTT-ACAATCAACTTGACGCGTGGCTACTCCAGTCTAT 341
                      ************************* **********************************

consensus_8746#0      TATAT------- 845
consensus_8746#1      TATATCAAACGA 353
                      *****