These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 637 fasta sequence [GATTTTACAGACTACGCTTTTGGCACTTTAAGATTTC-TCGAGCGATTGTTATTTTGGCTTCAAGCGATTCTCTGCTGACATTCAGCTTTGTGTATATAAACTATGCCA-AATCGTTACCGTTAGATAATATCTATCCTACTACTGTCTGGCTTAAATACAAAAAGCTGTCGTCTCAAGCGACAACTCCTACTTGCGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGACTGAAATAACACTGACGTACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTGTGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTTTTGCAATAAATATATGAGAAATAAAAAAAAAAAAAAAA] [+] EMBL CD145161 [GATTTTACAGACTACGCTTTTGGCACTTTAAGATTTC TCGAGCGATTGTTATTTTGGCTTCAAGCGATTCTCTGCTGACATTCAGCTTTGTGTATATAAACTATGCCA AATCGTTACCGTTAGATAATATCTATCGTACTACTGTCTGGCTTAAATACAAATAGCTGTGGTCTCAAGCGACAACTCCTACTTGCGGATCTCTCTTTGCCGCTGGTTATGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGACTGAAAAAACCCTGGCGTACANATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTANCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTANTACTTTTCAACTTTGGAGAACGAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGct ] [+] EMBL CD145175 [GATTCTACAGACTACGCTTTTGG ACTTTATGATTTCTTAAAGCGATTGTTATTTTGGCTT AAGCGAATTTCTGC GAAATTCAGC TCGTGTATA AAACTATGCCAGAGTCTCTACCGTTAGAGAATATCTATCCTACTACTGTCTGGCTTAAATACAAAAAGCTGTCGTCTCAAGCGACAACTCCTACTTGCGAATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGACTGAAATAACACTGACGTACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTANAAC GGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTC ] [-] EMBL CD135124 [ TAGCTATCCTAGTACTGTCGAGCTTAAATACAAAAAGCTATCGTATCAAGCGACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCTGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTGTGGCTC ] [-] EMBL AI395397 [ taTCGTTTCAAGCGACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACCAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTATGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTTTTGCAATAAATATATGAGAAATAAAAAAAAAAAAAAAA] consensusID : consensus_8747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [ATTCTAAAGACTACGCTTTTGGACTTAAGATTTCTTAAAGTGATTGTTATTTTGGCAAAAGCGAATTTCTGCGAAATTCAGTTCGTGTGTAAAACTATGCCAGAATCTCTACCGTTAGAGAATAGCTATCCTAGTACTGTCAAGCTTAAATACAAAAAGCTATCGTATCAAGCGACAACCCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGGCTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCC] [-] EMBL CD145288 [ATTCTAAAGACTACGCTTTTGGACTTAAGATTTCTTAAAGTGATTGTTATTTTGGCAAAAGCGAATTTCTGCGAAATTCAGTTCGTGTGTAAAACTATGCCAGAATCTCTACCGTTAGAGAATAGCTATCCTAGTACTGTCAAGCTTAAATACAAAAAGCTATCGTATCAAGCGACAACCCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGGCTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCC] consensusID : consensus_8747#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 446 fasta sequence [CTCGAGGCAGAATCGGCACGAGGGCGACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTATGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTT] [+] EMBL CD084073 [CTCGAGGCAGAATCGGCACGAGGGCGACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTATGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTT] [-] EMBL CD135408 [ GATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTATGGCTCAACTGGAGTGTAGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8747#0 GATTTTACAGACTACGCTTTTGGCACTTTAAGATTTCTCGAGCGATTGTTATTTTGGCTT 60 consensus_8747#1 -ATTCTAAAGACTACGCTTTTGG-ACTTAAGATTTCTTAAAGTGATTGTTATTTTGGCAA 58 consensus_8747#2 ------------------------------------------------------------ consensus_8747#0 CAAGCGATTCTCTGCTGACATTCAGCTTTGTGTATATAAACTATGCCA-AATCGTTACCG 119 consensus_8747#1 -AAGCGAATTTCTGC-GAAATTCAG-TTCGTGTGTA-AAACTATGCCAGAATCTCTACCG 114 consensus_8747#2 ------------------------------------------------------------ consensus_8747#0 TTAGATAATATCTATCCTACTACTGTCTGGCTTAAATACAAAAAGCTGTCGTCTCAAGCG 179 consensus_8747#1 TTAGAGAATAGCTATCCTAGTACTGTCAAGCTTAAATACAAAAAGCTATCGTATCAAGCG 174 consensus_8747#2 -------------------------------CTCGAGGCAGAA--TCGGCACGA-GGGCG 26 * * ** ** * *** consensus_8747#0 ACAACTCCTACTTGCGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAA 239 consensus_8747#1 ACAACCCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAA 234 consensus_8747#2 ACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAA 86 ***** ****** * ********************************************* consensus_8747#0 GCTACCATACCTCCTGGGGGTCGTGACTGAAATAACACTGACGTACAGATTGAATTGCCG 299 consensus_8747#1 GCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCG 294 consensus_8747#2 GCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCG 146 ************************** * ** *** ****** ***************** consensus_8747#0 GAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGAT 359 consensus_8747#1 GAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGGCTAGCCTTAAAACAGGGGATTGAT 354 consensus_8747#2 GAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGAT 206 *********************************** ************************ consensus_8747#0 GTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAAC 419 consensus_8747#1 GTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAAC 414 consensus_8747#2 GTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAAC 266 ************************************************************ consensus_8747#0 TTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAA 479 consensus_8747#1 TTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAA 474 consensus_8747#2 TTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAA 326 ************************************************************ consensus_8747#0 CGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCA 539 consensus_8747#1 CGTATTTTCTGTCC---------------------------------------------- 488 consensus_8747#2 CGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCA 386 ************** consensus_8747#0 AATGGTTGTGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTT 599 consensus_8747#1 ------------------------------------------------------------ consensus_8747#2 AATGGTTATGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTT 446 consensus_8747#0 TTGCAATAAATATATGAGAAATAAAAAAAAAAAAAAAA 637 consensus_8747#1 -------------------------------------- consensus_8747#2 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||