cluster # 8747

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Schistosoma mansoni
cluster # 8747 cluster # 8747 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8747#0 length = 637 sequences # 4

consensus_8747#1 length = 488 sequences # 1
consensus_8747#2 length = 446 sequences # 2

consensusID : consensus_8747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 637
fasta sequence

                              [GATTTTACAGACTACGCTTTTGGCACTTTAAGATTTC-TCGAGCGATTGTTATTTTGGCTTCAAGCGATTCTCTGCTGACATTCAGCTTTGTGTATATAAACTATGCCA-AATCGTTACCGTTAGATAATATCTATCCTACTACTGTCTGGCTTAAATACAAAAAGCTGTCGTCTCAAGCGACAACTCCTACTTGCGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGACTGAAATAACACTGACGTACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTGTGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTTTTGCAATAAATATATGAGAAATAAAAAAAAAAAAAAAA]

[+] EMBL CD145161             [GATTTTACAGACTACGCTTTTGGCACTTTAAGATTTC TCGAGCGATTGTTATTTTGGCTTCAAGCGATTCTCTGCTGACATTCAGCTTTGTGTATATAAACTATGCCA AATCGTTACCGTTAGATAATATCTATCGTACTACTGTCTGGCTTAAATACAAATAGCTGTGGTCTCAAGCGACAACTCCTACTTGCGGATCTCTCTTTGCCGCTGGTTATGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGACTGAAAAAACCCTGGCGTACANATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTANCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTANTACTTTTCAACTTTGGAGAACGAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGct                                                                                                                                   ]
[+] EMBL CD145175             [GATTCTACAGACTACGCTTTTGG ACTTTATGATTTCTTAAAGCGATTGTTATTTTGGCTT AAGCGAATTTCTGC GAAATTCAGC TCGTGTATA AAACTATGCCAGAGTCTCTACCGTTAGAGAATATCTATCCTACTACTGTCTGGCTTAAATACAAAAAGCTGTCGTCTCAAGCGACAACTCCTACTTGCGAATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGACTGAAATAACACTGACGTACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTANAAC GGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTC                                                                                                                                                 ]
[-] EMBL CD135124             [                                                                                                                                 TAGCTATCCTAGTACTGTCGAGCTTAAATACAAAAAGCTATCGTATCAAGCGACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCTGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTGTGGCTC                                                                                    ]
[-] EMBL AI395397             [                                                                                                                                                                       taTCGTTTCAAGCGACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACCAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTATGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTTTTGCAATAAATATATGAGAAATAAAAAAAAAAAAAAAA]




>consensus_8747#0
GATTTTACAGACTACGCTTTTGGCACTTTAAGATTTCTCGAGCGATTGTTATTTTGGCTT
CAAGCGATTCTCTGCTGACATTCAGCTTTGTGTATATAAACTATGCCAAATCGTTACCGT
TAGATAATATCTATCCTACTACTGTCTGGCTTAAATACAAAAAGCTGTCGTCTCAAGCGA
CAACTCCTACTTGCGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAG
CTACCATACCTCCTGGGGGTCGTGACTGAAATAACACTGACGTACAGATTGAATTGCCGG
AAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATG
TTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACT
TTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAAC
GTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAA
ATGGTTGTGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTTT
TGCAATAAATATATGAGAAATAAAAAAAAAAAAAAAA

consensusID : consensus_8747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [ATTCTAAAGACTACGCTTTTGGACTTAAGATTTCTTAAAGTGATTGTTATTTTGGCAAAAGCGAATTTCTGCGAAATTCAGTTCGTGTGTAAAACTATGCCAGAATCTCTACCGTTAGAGAATAGCTATCCTAGTACTGTCAAGCTTAAATACAAAAAGCTATCGTATCAAGCGACAACCCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGGCTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCC]

[-] EMBL CD145288             [ATTCTAAAGACTACGCTTTTGGACTTAAGATTTCTTAAAGTGATTGTTATTTTGGCAAAAGCGAATTTCTGCGAAATTCAGTTCGTGTGTAAAACTATGCCAGAATCTCTACCGTTAGAGAATAGCTATCCTAGTACTGTCAAGCTTAAATACAAAAAGCTATCGTATCAAGCGACAACCCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGGCTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCC]




>consensus_8747#1
ATTCTAAAGACTACGCTTTTGGACTTAAGATTTCTTAAAGTGATTGTTATTTTGGCAAAA
GCGAATTTCTGCGAAATTCAGTTCGTGTGTAAAACTATGCCAGAATCTCTACCGTTAGAG
AATAGCTATCCTAGTACTGTCAAGCTTAAATACAAAAAGCTATCGTATCAAGCGACAACC
CCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACC
ATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGC
TGTTATGGTCGCGTCGCTCCACGAAGCGGGCTAGCCTTAAAACAGGGGATTGATGTTGGT
GCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGA
GAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATT
TTCTGTCC

consensusID : consensus_8747#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 446
fasta sequence

                              [CTCGAGGCAGAATCGGCACGAGGGCGACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTATGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTT]

[+] EMBL CD084073             [CTCGAGGCAGAATCGGCACGAGGGCGACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTATGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTT]
[-] EMBL CD135408             [                                                                                                                                                                                                           GATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCAAATGGTTATGGCTCAACTGGAGTGTAGAA                               ]




>consensus_8747#2
CTCGAGGCAGAATCGGCACGAGGGCGACAACTCCTACTCGTGGATCTCTCTTTGCCGCTG
GTTACGATCTTTACGCTGCTCATGAAGCTACCATACCTCCTGGGGGTCGTGAATTAATTA
AAACTGACATACAGATTGAATTGCCGGAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCG
GACTAGCCTTAAAACAGGGGATTGATGTTGGTGCTGGTGTTATTGACCGCGACTATAGGG
GCAATGTTGGTGTAGTACTTTTCAACTTTGGAGAACAAGAATTTGAAATCAGAAAGGGTG
ACCGTGTAGCACAACTGATTTGTGAACGTATTTTCTGTCCTGAACTGATGGAATGTGAAT
CGTTGGCGGAGACGGATCGTGGTTCAAATGGTTATGGCTCAACTGGAGTGTAGAACCTAG
TAATTTTATCAGAATCAAAATATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8747#0      GATTTTACAGACTACGCTTTTGGCACTTTAAGATTTCTCGAGCGATTGTTATTTTGGCTT 60
consensus_8747#1      -ATTCTAAAGACTACGCTTTTGG-ACTTAAGATTTCTTAAAGTGATTGTTATTTTGGCAA 58
consensus_8747#2      ------------------------------------------------------------
                                                                                  

consensus_8747#0      CAAGCGATTCTCTGCTGACATTCAGCTTTGTGTATATAAACTATGCCA-AATCGTTACCG 119
consensus_8747#1      -AAGCGAATTTCTGC-GAAATTCAG-TTCGTGTGTA-AAACTATGCCAGAATCTCTACCG 114
consensus_8747#2      ------------------------------------------------------------
                                                                                  

consensus_8747#0      TTAGATAATATCTATCCTACTACTGTCTGGCTTAAATACAAAAAGCTGTCGTCTCAAGCG 179
consensus_8747#1      TTAGAGAATAGCTATCCTAGTACTGTCAAGCTTAAATACAAAAAGCTATCGTATCAAGCG 174
consensus_8747#2      -------------------------------CTCGAGGCAGAA--TCGGCACGA-GGGCG 26
                                                      *  *  ** **      *       ***

consensus_8747#0      ACAACTCCTACTTGCGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAA 239
consensus_8747#1      ACAACCCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAA 234
consensus_8747#2      ACAACTCCTACTCGTGGATCTCTCTTTGCCGCTGGTTACGATCTTTACGCTGCTCATGAA 86
                      ***** ****** * *********************************************

consensus_8747#0      GCTACCATACCTCCTGGGGGTCGTGACTGAAATAACACTGACGTACAGATTGAATTGCCG 299
consensus_8747#1      GCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCG 294
consensus_8747#2      GCTACCATACCTCCTGGGGGTCGTGAATTAATTAAAACTGACATACAGATTGAATTGCCG 146
                      ************************** * ** *** ****** *****************

consensus_8747#0      GAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGAT 359
consensus_8747#1      GAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGGCTAGCCTTAAAACAGGGGATTGAT 354
consensus_8747#2      GAAGGCTGTTATGGTCGCGTCGCTCCACGAAGCGGACTAGCCTTAAAACAGGGGATTGAT 206
                      *********************************** ************************

consensus_8747#0      GTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAAC 419
consensus_8747#1      GTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAAC 414
consensus_8747#2      GTTGGTGCTGGTGTTATTGACCGCGACTATAGGGGCAATGTTGGTGTAGTACTTTTCAAC 266
                      ************************************************************

consensus_8747#0      TTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAA 479
consensus_8747#1      TTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAA 474
consensus_8747#2      TTTGGAGAACAAGAATTTGAAATCAGAAAGGGTGACCGTGTAGCACAACTGATTTGTGAA 326
                      ************************************************************

consensus_8747#0      CGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCA 539
consensus_8747#1      CGTATTTTCTGTCC---------------------------------------------- 488
consensus_8747#2      CGTATTTTCTGTCCTGAACTGATGGAATGTGAATCGTTGGCGGAGACGGATCGTGGTTCA 386
                      **************                                              

consensus_8747#0      AATGGTTGTGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTT 599
consensus_8747#1      ------------------------------------------------------------
consensus_8747#2      AATGGTTATGGCTCAACTGGAGTGTAGAACCTAGTAATTTTATCAGAATCAAAATATTTT 446
                                                                                  

consensus_8747#0      TTGCAATAAATATATGAGAAATAAAAAAAAAAAAAAAA 637
consensus_8747#1      --------------------------------------
consensus_8747#2      --------------------------------------