cluster # 8749

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Schistosoma mansoni
cluster # 8749 cluster # 8749 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8749#0 length = 1073 sequences # 6

consensus_8749#1 length = 293 sequences # 1

consensusID : consensus_8749#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1073
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTAATGCATATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAAAAAACTATCTTCAGGAAGATGAACTGAACTCTTCTGCAACTGCACACGCAGCGCTATAGACAGCATCATTCAACCCAACCCCATCGTACGAATTACCAACAA-GATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGTTGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTACGGAGAATACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTTCCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGT-AAAGGAGTCATCTATTTCTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAATATCAGTAGTCAGTATGTTTTCCAAAATACTTGCTGTAGTGAAGGATGGGCAGCAAAAAAAGACTATATCAGCTGTATTTTTTTCTTTGTCGTTACCATTATCACCGATGCTCTTGTAAGTATACTCAAAGCAACCA-TTACAGATTTTAATTTTTCAACGG-ACACCTCGTACTGCAAATCGATATGTGGATGTTTCCTACTTAAATGATCTACAATAGTGTCAATCAATGTCTCCAATCCACCTGACAAAGTCCAAGCAATCGCATCAGATGGAATCAAGTTATTCAGTTGCGGGAGTTTGTCGTCAATCATATTTGGTATAACGATACGATCTAAAGATCGGTTTATCCGTGAAAG]

[+] EMBL AI395053             [TTTTTTTTTTTTTTTTTTTTTAATGCATATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAAAAAACTATCTTCAGGAAGATGAACTGAACTCTTCTGCAACTGCACACGCAGCGCTATAGACAGCATCATTCAACCCAACCCCATCGTACGAATTACCAACAA GATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGTTGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTACAGAGAATACTAATATGACGACCAACAATGA CGGATCCGGTATTTTAAGATGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD117647             [                                          AGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAAAAAACTATCTTCAGGAAGATGAACTGAACTCTTCTGCAACTGCACACGCAGCGCTATAGACAGCATCATTCAACCCAACCCCATCGTACGAATTACCAACAA GATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGTTGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTAAGGAGAATACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD070006             [                                                                                                                                                                                                                                          ACCAACAACGATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGTTGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTACGGAGAATACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTTCCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGTAAAAGGAGTCATCTATTTCTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAATATCAGTAGTCAGTATGTTTTCCAAAATACTTGC                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD083643             [                                                                                                                                                                                                                                                                                                                                                                        TACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTTCCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGT AAAGGAGTCATCTATTTCTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAATATCAGTAGTCAGTATGTTTTCCAAAATACTTGCTGTAGTGAAGGATGGGCAGCAAAAAAAGACTATATCAGCTGTATTTTTTTCTTTGTCGTTACCATTATCACCGATGCTCTTGTAAGTATACTCAAAGCAACCA TTACAGATTTTAATTTTTCAACGG ACACCTCGT                                                                                                                                                                                           ]
[+] EMBL CD150704             [                                                                                                                                                                                                                                                                                                                                                                               ATGACGGCCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGGGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAA TTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD185728             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTTCCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGT AAAGGAGTCATCTATNTTTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAATATCAGTAGTCAGTATGTTTTCCAAAATACTTGCTGTAGTGAAGGATGGGCAGCAAAAAAAGACTATATCAGCTGTATTTTTTTCTTTGTCGTTACCATTATCACCGATGCTCTTGTAAGTATACTCAAAGCAACCATTTACAGATTTTAATTTTTCAACGGAACA GTTTAACTGCAAATCGATATGTGGATGTTTCCTACTTAAATGATCTACAATAGTGTCAATCAATGTCTCCAATCCACCTGACAAAGTCCAAGCAATCGCATCAGATGGAATCAAGTTATTCAGTTGCGGGAGTTTGTCGTCAATCATATTTGGTATAACGATACGATCTAAAGATCGGTTTATCCGTGAAAG]




>consensus_8749#0
TTTTTTTTTTTTTTTTTTTTTAATGCATATGGTTTATTTTACAGCCATAATCTTCTAGCA
GACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTG
TGAACAGTAAATGTTTTTAAAAAACTATCTTCAGGAAGATGAACTGAACTCTTCTGCAAC
TGCACACGCAGCGCTATAGACAGCATCATTCAACCCAACCCCATCGTACGAATTACCAAC
AAGATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGTTGCG
CAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTACGGAGAAT
ACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGT
TTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGGAGGC
TTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAAATCC
ATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTTCCGT
ACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGTAAAGGAGTCATCTATTTCTAG
GACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAATATC
AGTAGTCAGTATGTTTTCCAAAATACTTGCTGTAGTGAAGGATGGGCAGCAAAAAAAGAC
TATATCAGCTGTATTTTTTTCTTTGTCGTTACCATTATCACCGATGCTCTTGTAAGTATA
CTCAAAGCAACCATTACAGATTTTAATTTTTCAACGGACACCTCGTACTGCAAATCGATA
TGTGGATGTTTCCTACTTAAATGATCTACAATAGTGTCAATCAATGTCTCCAATCCACCT
GACAAAGTCCAAGCAATCGCATCAGATGGAATCAAGTTATTCAGTTGCGGGAGTTTGTCG
TCAATCATATTTGGTATAACGATACGATCTAAAGATCGGTTTATCCGTGAAAG

consensusID : consensus_8749#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [TTTTTTTTTTTTTTTTTTAACAAAACACTTAGTGGGGATTTATTTCCACTATATGATAACCATTCTAATGATAAACTACAATTTTGCAAGATCCTACTAAGTGCTGAAGAAAAGGATGAAAATGTGGTTTAATATAAAAACCGGAAACAGGTTTTTTTTTAATGCATATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAGAATACTATCTTCCA]

[+] EMBL AI394948             [TTTTTTTTTTTTTTTTTTAACAAAACACTTAGTGGGGATTTATTTCCACTATATGATAACCATTCTAATGATAAACTACAATTTTGCAAGATCCTACTAAGTGCTGAAGAAAAGGATGAAAATGTGGTTTAATATAAAAACCGGAAACAGGTTTTTTTTTAATGCATATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAGAATACTATCTTCCA]




>consensus_8749#1
TTTTTTTTTTTTTTTTTTAACAAAACACTTAGTGGGGATTTATTTCCACTATATGATAAC
CATTCTAATGATAAACTACAATTTTGCAAGATCCTACTAAGTGCTGAAGAAAAGGATGAA
AATGTGGTTTAATATAAAAACCGGAAACAGGTTTTTTTTTAATGCATATGGTTTATTTTA
CAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTG
TACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAGAATACTATCTTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8749#0      TTTTTTTTTTTTTTTTTTTTTAATGCATATGGTTTAT-TTTACAGCCATAATCTTCTAGC 59
consensus_8749#1      TTTTTTTTTTTTTTTTTTAACAAAACACTTAGTGGGGATTTATTTCCACTATATGATAAC 60
                      ******************   **  **  * **     ****   ***  ** *  ** *

consensus_8749#0      AGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTT 119
consensus_8749#1      ---CATTCTAATGATAAA---CTACAATTTTGCAAG--ATCCTACTAAGTGCTGAAGAAA 112
                         * *  * **  *  *   ***  * *  * **   **  ***  * *    * *   

consensus_8749#0      GTGAACAGTAAATGTTTTTAAAAAACTATCTTCAGGAAGATGAACTGAACTCTTCTGCA- 178
consensus_8749#1      AGGATGAAAATGTGGTTTAATATAAAAACC-----GGAAACAGGTTTTTTTTTAATGCAT 167
                        **  *  *  ** *** * * **  * *     * * *     *    * *  **** 

consensus_8749#0      ACTGCACACGCAGC-GCTATAGACAGC-ATCATTCAACCCAACCCCATCGTACGAATTAC 236
consensus_8749#1      ATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAAT 227
                      *  *   *     * ** ***  *  * * **  *  *   *  *  * ** * *   * 

consensus_8749#0      CAACAAGATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGT 296
consensus_8749#1      AAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAGAATACTAT 287
                       *  **  ***    **        **   * **  ** *  *  **    **** *  *

consensus_8749#0      TGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTACGGA 356
consensus_8749#1      CTTCCA------------------------------------------------------ 293
                          **                                                      

consensus_8749#0      GAATACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGA 416
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      CGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGG 476
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      AGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAA 536
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      ATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTT 596
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      CCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGTAAAGGAGTCATCTATTT 656
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      CTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAA 716
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      TATCAGTAGTCAGTATGTTTTCCAAAATACTTGCTGTAGTGAAGGATGGGCAGCAAAAAA 776
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      AGACTATATCAGCTGTATTTTTTTCTTTGTCGTTACCATTATCACCGATGCTCTTGTAAG 836
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      TATACTCAAAGCAACCATTACAGATTTTAATTTTTCAACGGACACCTCGTACTGCAAATC 896
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      GATATGTGGATGTTTCCTACTTAAATGATCTACAATAGTGTCAATCAATGTCTCCAATCC 956
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      ACCTGACAAAGTCCAAGCAATCGCATCAGATGGAATCAAGTTATTCAGTTGCGGGAGTTT 1016
consensus_8749#1      ------------------------------------------------------------
                                                                                  

consensus_8749#0      GTCGTCAATCATATTTGGTATAACGATACGATCTAAAGATCGGTTTATCCGTGAAAG 1073
consensus_8749#1      ---------------------------------------------------------