These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 966 fasta sequence [CCGAGCCAATATTCGGCACGAGGCTATGTCTGTAAAACAACGTAAATATCCGATAAATAATTGTATGGAATCCAACATCAGGCATCGTTCTGAAAACACTGTACAAGCATACCCATCTTCTTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGTCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACCCCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTTTCTTATCTTCTTATGAATTTCTATTTTGTTTTATTCTGTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAAAATAAATAGTTTTAATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD082505 [CCGAGCCAATATTCGGCACGAGGCTATGTCTGTAAAACAACGTAAATATCCGATAAATAATTGTATGGAATCCAACATCAGGCATCGTTCTGAAAACACTGTACAAGCATACCCATCTTCTTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGTCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTNTCACATGCACATATCAGTTNTTTGGAAATTA ] [-] EMBL CD076101 [ TGTCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACCCCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTTTCTTATCTTCTTATGAATTTCTATTTTGTTTTATTCTGTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAAAATAAATAGTTT ] [-] EMBL AI394880 [ CGTAATACAA TATCTCATTGTGATATTTAAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACAT TCAGTTTTTTGGAAATTACTTATGTACCCCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTTTCTTATCTTCTTATGAATTTCTATTTTGTTTTATTCTGTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAGAATAAATAGTTTTAATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence [GCTTTTCAGCAAAATTTTATATGCTCTAATCTGTTACCATTATATTCATTTCTTTATCCAGTAACTCTTACAACTTTTTTTAGAGTTGGTGAAGGAACAACCTATCACTTGCATAACGATTACATATCTATCCTAATTCTATGTTTCTGTATTCTTTTCAGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGG-TTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACACCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTANAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTNTCTTATCTTCTTATGAATTTCTATTCTGGTTTATTCTGCTACTGATGCTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAGAATAAATAGTTT] [+] EMBL CD078603 [GCTTTTCAGCAAAATTTTATATGCTCTAATCTGTTACCATTATATTCATTTCTTTATCCAGTAACTCTTACAACTTTTTTTAGAGTTGGTGAAGGAACAACCTATCACTTGCATAACGATTACATATCTATCCTAATTCTATGTTTCTGTATTCTTTTCAGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGG TTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACACCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTANAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTNTCTTATCTTCTTATGAATTTCTATTCTGGTTTATTCTGCTACTGATGCT ] [-] EMBL CD073560 [ GATTACATATCTATCCTAATTCTATGTTTCTGTATTCTTTTCAGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACCCCACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACCCCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACCAATATGTAGAAAAAGCAGATCAGATAGTTTTCTTATCTTCTTATGAATTTCTATTTTGTTTTATTCTGTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAGAATAAATAGTTT] consensusID : consensus_8750#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [TTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGCCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGGTTTGGACAATTGTCTGGTCTTGTAGAACCATTTGCCGGGCTTATCGGTTGTCTGGCCGTACATTTCTTCCGAAGCTGCAGCCTTATGCGTTAGGTTTTGCTGCAGGAGCTAAGTTATTCGTTGTAGTTGATGACATTATCCCTGAATCTCAGTCCAGAGGTCATGGCCGACTATCATCTGTCATGGCCCTTATTG] [+] EMBL CD136921 [TTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGCCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGGTTTGGACAATTGTCTGGTCTTGTAGAACCATTTGCCGGGCTTATCGGTTGTCTGGCCGTACATTTCTTCCGAAGCTGCAGCCTTATGCGTTAGGTTTTGCTGCAGGAGCTAAGTTATTCGTTGTAGTTGATGACATTATCCCTGAATCTCAGTCCAGAGGTCATGGCCGACTATCATCTGTCATGGCCCTTATTG] consensusID : consensus_8750#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [GCTTTTTACGTAAAACCATTATTTCCTTGTGATATTATAAAAACCCCACTTAAAAATAAATAAGCCCTTTTTCACATGCACAAATCAGTTTTTTGGAAATTACTTATGTACCCCCTAAAGGATTCCTATGAATACTGTTAATGGGGGGTAGGACCCGTAGTCTTTTGTCCTCATCTCGATTTTTAAAATCCCAATTTTTGACGTAAAGAACCAATATGTAGAAAAAGCCGATCCGAAAGTTTTTTTATCTTTTTAAGAAATTAAAATTTGTTTTATTCTGTTACTGAAGTTCTTTTTAAACTTTAATAAAACTAAACTTAAAAATGTTTCAAATCTGTCCGGGAAATCTCGGATTTTTTTTAAATTCATGGAGAATAAATAGTTT] [-] EMBL CD073067 [GCTTTTTACGTAAAACCATTATTTCCTTGTGATATTATAAAAACCCCACTTAAAAATAAATAAGCCCTTTTTCACATGCACAAATCAGTTTTTTGGAAATTACTTATGTACCCCCTAAAGGATTCCTATGAATACTGTTAATGGGGGGTAGGACCCGTAGTCTTTTGTCCTCATCTCGATTTTTAAAATCCCAATTTTTGACGTAAAGAACCAATATGTAGAAAAAGCCGATCCGAAAGTTTTTTTATCTTTTTAAGAAATTAAAATTTGTTTTATTCTGTTACTGAAGTTCTTTTTAAACTTTAATAAAACTAAACTTAAAAATGTTTCAAATCTGTCCGGGAAATCTCGGATTTTTTTTAAATTCATGGAGAATAAATAGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8750#1 ------------------------------------------------------------ consensus_8750#3 ------------------------------------------------------------ consensus_8750#0 CCGAGCCAATATTCGGCACGAGGCTATGTCTGTAAAACAACGTAAATATCCGATAAATAA 60 consensus_8750#2 ------------------------------------------------------------ consensus_8750#1 ------------------------------------------------------------ consensus_8750#3 ------------------------------------------------------------ consensus_8750#0 TTGTATGGAATCCAACATCAGGCATCGTTCTGAAAACACTGTACAAGCATACCCATCTTC 120 consensus_8750#2 ------------------------------------------------------------ consensus_8750#1 ------------------------------------------------------------ consensus_8750#3 ------------------------------------------------------------ consensus_8750#0 TTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCG 180 consensus_8750#2 ------------------------------------------------------------ consensus_8750#1 ------------------------------------------------GCTTTTCAGCAA 12 consensus_8750#3 ------------------------------------------------------------ consensus_8750#0 CTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGG 240 consensus_8750#2 ------------------------------------------------------------ consensus_8750#1 AATTTTATATGCTCTAATCTGTTACCATT-ATATTCATTTCTTTATCCAGTAACTCTTAC 71 consensus_8750#3 ------------------------------------------------------------ consensus_8750#0 TATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCT 300 consensus_8750#2 ------------------------------------------------------------ consensus_8750#1 AACTTTTTTTAGAGTTGGTGAAGGAACAACCTATCACTTGCATAACGATTACATATCTAT 131 consensus_8750#3 ------------------------------------------------------------ consensus_8750#0 GGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGTCAGTCTACCATTATA 360 consensus_8750#2 ------------------------------------------------------------ consensus_8750#1 CCTAATTCTATGT---TTCTGTATTCTTTTCAGAGGTCATGGCCGACTATCAACTGTCAT 188 consensus_8750#3 ------------------------------------------------------------ consensus_8750#0 TTCAGCTGGATATGGATTTTTCATTAGTTTCTGAGGTCATGGCCGACTATCAACTGTCAT 420 consensus_8750#2 ------------------------------------------------------------ consensus_8750#1 GGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGG 248 consensus_8750#3 ------------------------------------------------------------ consensus_8750#0 GGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGG 480 consensus_8750#2 ------------------------------------------TTCATCGATAGAGGTTGA 18 consensus_8750#1 AAAGTAGTTGGGTT-CTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGT 307 consensus_8750#3 ------------------------------------------------------------ consensus_8750#0 AAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGT 540 consensus_8750#2 TAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCAT 78 consensus_8750#1 ACTGCTTCT--TACGTAATACAATTA----TCTCATTGT-GATATTATAAAAACACAACT 360 consensus_8750#3 ---GCTTTT--TACGTAAAACCATTA----TTTCCTTGT-GATATTATAAAAACCCCACT 50 consensus_8750#0 ACTGCTTCT--TACGTAATACAATTA----TCTCATTGT-GATATTATAAAAACACAACT 593 consensus_8750#2 AGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACT 138 * ** *** *** * * * * *** * **** * *** consensus_8750#1 TAAA-AATAAATAAG---CCCTTTTTCACATGCACATA-TCAGTTTTTTGGAAAT--TAC 413 consensus_8750#3 TAAA-AATAAATAAG---CCCTTTTTCACATGCACAAA-TCAGTTTTTTGGAAAT--TAC 103 consensus_8750#0 TAAA-AATAAATAAG---CCCTTTTTCACATGCACATA-TCAGTTTTTTGGAAAT--TAC 646 consensus_8750#2 TGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTAT 198 * * **** *** ******* ** *** * ** * * ** * * ** consensus_8750#1 TTATGTACACCTTAAAGTATTC-CTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTC 472 consensus_8750#3 TTATGTACCCCCTAAAGGATTC-CTATGAATACTGTTAATGGGGGGTAGGACCCGTAGTC 162 consensus_8750#0 TTATGTACCCCTTAAAGTATTC-CTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTC 705 consensus_8750#2 TCAAAACTTTCCTGAAGGTTTGGCTGCCAGT-CTACCATTATATTCAGCTGGATATGGAT 257 * * * * *** ** ** * * ** * * * * consensus_8750#1 TTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTANAGAACAAATATGTAGA 532 consensus_8750#3 TTTTGTCCTCATCTCGATTTTTAAAATCCCAATTTTTGACGTAAAGAACCAATATGTAGA 222 consensus_8750#0 TTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACAAATATGTAGA 765 consensus_8750#2 TTTTCATTAGTTTCTGGTTTGGACAATTG----TCTGGTCTTGTAGAACCA-TTTGCCGG 312 **** * * ** * *** * * * * * ***** * * ** * consensus_8750#1 AAAAGCAGATCAGATAGTTNT-CTTATCTTCTTATGAATTTCTATTCTGGTTTA--TTCT 589 consensus_8750#3 AAAAGCCGATCCGAAAGTTTT-TTTATCTTTTTAAGAAATTAAAATTTGTTTTA--TTCT 279 consensus_8750#0 AAAAGCAGATCAGATAGTTTT-CTTATCTTCTTATGAATTTCTATTTTGTTTTA--TTCT 822 consensus_8750#2 GCTTATCGGTTGTCTGGCCGTACATTTCTTCCGAAGCTGCAGCCTTATGCGTTAGGTTTT 372 * * * * * **** * * * ** *** ** * consensus_8750#1 GCTACTGATGCTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTC 649 consensus_8750#3 GTTACTGAAGTTCTTTTTAAACTTTAATAAAACTAAACTTAAAAATGTTTCAAATCTGTC 339 consensus_8750#0 GTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTC 882 consensus_8750#2 GCTGCAGGAGCTAAGTTA----TTCGTTGTAGTTGATGACATTATCCCTGAATCTCAGTC 428 * * * * * * ** ** * * * * * * * ** *** consensus_8750#1 AGGTATATCTCGTATTTTTTTTATAT-TCATGGAGAATAAATAGTTT------------- 695 consensus_8750#3 CGGGAAATCTCGGATTTTTTTTAAAT-TCATGGAGAATAAATAGTTT------------- 385 consensus_8750#0 AGGTATATCTCGTATTTTTTTTATAT-TCATGGAAAATAAATAGTTTTAATTTTTAAAAA 941 consensus_8750#2 CAG-AGGTCATGGCCGACTATCATCTGTCATGGCCCTTATTG------------------ 469 * * ** * * * * * ****** ** consensus_8750#1 ------------------------- consensus_8750#3 ------------------------- consensus_8750#0 AAAAAAAAAAAAAAAAAAAAAAAAA 966 consensus_8750#2 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||