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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 966 fasta sequence
[CCGAGCCAATATTCGGCACGAGGCTATGTCTGTAAAACAACGTAAATATCCGATAAATAATTGTATGGAATCCAACATCAGGCATCGTTCTGAAAACACTGTACAAGCATACCCATCTTCTTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGTCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACCCCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTTTCTTATCTTCTTATGAATTTCTATTTTGTTTTATTCTGTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAAAATAAATAGTTTTAATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD082505 [CCGAGCCAATATTCGGCACGAGGCTATGTCTGTAAAACAACGTAAATATCCGATAAATAATTGTATGGAATCCAACATCAGGCATCGTTCTGAAAACACTGTACAAGCATACCCATCTTCTTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGTCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTNTCACATGCACATATCAGTTNTTTGGAAATTA ]
[-] EMBL CD076101 [ TGTCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACCCCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTTTCTTATCTTCTTATGAATTTCTATTTTGTTTTATTCTGTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAAAATAAATAGTTT ]
[-] EMBL AI394880 [ CGTAATACAA TATCTCATTGTGATATTTAAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACAT TCAGTTTTTTGGAAATTACTTATGTACCCCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTTTCTTATCTTCTTATGAATTTCTATTTTGTTTTATTCTGTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAGAATAAATAGTTTTAATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence
[GCTTTTCAGCAAAATTTTATATGCTCTAATCTGTTACCATTATATTCATTTCTTTATCCAGTAACTCTTACAACTTTTTTTAGAGTTGGTGAAGGAACAACCTATCACTTGCATAACGATTACATATCTATCCTAATTCTATGTTTCTGTATTCTTTTCAGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGG-TTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACACCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTANAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTNTCTTATCTTCTTATGAATTTCTATTCTGGTTTATTCTGCTACTGATGCTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAGAATAAATAGTTT]
[+] EMBL CD078603 [GCTTTTCAGCAAAATTTTATATGCTCTAATCTGTTACCATTATATTCATTTCTTTATCCAGTAACTCTTACAACTTTTTTTAGAGTTGGTGAAGGAACAACCTATCACTTGCATAACGATTACATATCTATCCTAATTCTATGTTTCTGTATTCTTTTCAGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGG TTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACACAACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACACCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTANAGAACAAATATGTAGAAAAAGCAGATCAGATAGTTNTCTTATCTTCTTATGAATTTCTATTCTGGTTTATTCTGCTACTGATGCT ]
[-] EMBL CD073560 [ GATTACATATCTATCCTAATTCTATGTTTCTGTATTCTTTTCAGAGGTCATGGCCGACTATCAACTGTCATGGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGGAAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGTACTGCTTCTTACGTAATACAATTATCTCATTGTGATATTATAAAAACCCCACTTAAAAATAAATAAGCCCTTTTTCACATGCACATATCAGTTTTTTGGAAATTACTTATGTACCCCTTAAAGTATTCCTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTCTTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACCAATATGTAGAAAAAGCAGATCAGATAGTTTTCTTATCTTCTTATGAATTTCTATTTTGTTTTATTCTGTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTCAGGTATATCTCGTATTTTTTTTATATTCATGGAGAATAAATAGTTT]
consensusID : consensus_8750#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[TTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGCCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGGTTTGGACAATTGTCTGGTCTTGTAGAACCATTTGCCGGGCTTATCGGTTGTCTGGCCGTACATTTCTTCCGAAGCTGCAGCCTTATGCGTTAGGTTTTGCTGCAGGAGCTAAGTTATTCGTTGTAGTTGATGACATTATCCCTGAATCTCAGTCCAGAGGTCATGGCCGACTATCATCTGTCATGGCCCTTATTG]
[+] EMBL CD136921 [TTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGCCAGTCTACCATTATATTCAGCTGGATATGGATTTTTCATTAGTTTCTGGTTTGGACAATTGTCTGGTCTTGTAGAACCATTTGCCGGGCTTATCGGTTGTCTGGCCGTACATTTCTTCCGAAGCTGCAGCCTTATGCGTTAGGTTTTGCTGCAGGAGCTAAGTTATTCGTTGTAGTTGATGACATTATCCCTGAATCTCAGTCCAGAGGTCATGGCCGACTATCATCTGTCATGGCCCTTATTG]
consensusID : consensus_8750#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[GCTTTTTACGTAAAACCATTATTTCCTTGTGATATTATAAAAACCCCACTTAAAAATAAATAAGCCCTTTTTCACATGCACAAATCAGTTTTTTGGAAATTACTTATGTACCCCCTAAAGGATTCCTATGAATACTGTTAATGGGGGGTAGGACCCGTAGTCTTTTGTCCTCATCTCGATTTTTAAAATCCCAATTTTTGACGTAAAGAACCAATATGTAGAAAAAGCCGATCCGAAAGTTTTTTTATCTTTTTAAGAAATTAAAATTTGTTTTATTCTGTTACTGAAGTTCTTTTTAAACTTTAATAAAACTAAACTTAAAAATGTTTCAAATCTGTCCGGGAAATCTCGGATTTTTTTTAAATTCATGGAGAATAAATAGTTT]
[-] EMBL CD073067 [GCTTTTTACGTAAAACCATTATTTCCTTGTGATATTATAAAAACCCCACTTAAAAATAAATAAGCCCTTTTTCACATGCACAAATCAGTTTTTTGGAAATTACTTATGTACCCCCTAAAGGATTCCTATGAATACTGTTAATGGGGGGTAGGACCCGTAGTCTTTTGTCCTCATCTCGATTTTTAAAATCCCAATTTTTGACGTAAAGAACCAATATGTAGAAAAAGCCGATCCGAAAGTTTTTTTATCTTTTTAAGAAATTAAAATTTGTTTTATTCTGTTACTGAAGTTCTTTTTAAACTTTAATAAAACTAAACTTAAAAATGTTTCAAATCTGTCCGGGAAATCTCGGATTTTTTTTAAATTCATGGAGAATAAATAGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8750#1 ------------------------------------------------------------
consensus_8750#3 ------------------------------------------------------------
consensus_8750#0 CCGAGCCAATATTCGGCACGAGGCTATGTCTGTAAAACAACGTAAATATCCGATAAATAA 60
consensus_8750#2 ------------------------------------------------------------
consensus_8750#1 ------------------------------------------------------------
consensus_8750#3 ------------------------------------------------------------
consensus_8750#0 TTGTATGGAATCCAACATCAGGCATCGTTCTGAAAACACTGTACAAGCATACCCATCTTC 120
consensus_8750#2 ------------------------------------------------------------
consensus_8750#1 ------------------------------------------------------------
consensus_8750#3 ------------------------------------------------------------
consensus_8750#0 TTCATCGATAGAGGTTGATAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCG 180
consensus_8750#2 ------------------------------------------------------------
consensus_8750#1 ------------------------------------------------GCTTTTCAGCAA 12
consensus_8750#3 ------------------------------------------------------------
consensus_8750#0 CTTATGGTTGTTAATCATAGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGG 240
consensus_8750#2 ------------------------------------------------------------
consensus_8750#1 AATTTTATATGCTCTAATCTGTTACCATT-ATATTCATTTCTTTATCCAGTAACTCTTAC 71
consensus_8750#3 ------------------------------------------------------------
consensus_8750#0 TATTGCATTTGGTGGACTTGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCT 300
consensus_8750#2 ------------------------------------------------------------
consensus_8750#1 AACTTTTTTTAGAGTTGGTGAAGGAACAACCTATCACTTGCATAACGATTACATATCTAT 131
consensus_8750#3 ------------------------------------------------------------
consensus_8750#0 GGCGATCGGTATTGCTATTCAAAACTTTCCTGAAGGTTTGGCTGTCAGTCTACCATTATA 360
consensus_8750#2 ------------------------------------------------------------
consensus_8750#1 CCTAATTCTATGT---TTCTGTATTCTTTTCAGAGGTCATGGCCGACTATCAACTGTCAT 188
consensus_8750#3 ------------------------------------------------------------
consensus_8750#0 TTCAGCTGGATATGGATTTTTCATTAGTTTCTGAGGTCATGGCCGACTATCAACTGTCAT 420
consensus_8750#2 ------------------------------------------------------------
consensus_8750#1 GGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGG 248
consensus_8750#3 ------------------------------------------------------------
consensus_8750#0 GGCCCTTATTGGTTTCGCTATTATGATGTGCTTAGAAGTGTTTACAGAGACCTAGTGAGG 480
consensus_8750#2 ------------------------------------------TTCATCGATAGAGGTTGA 18
consensus_8750#1 AAAGTAGTTGGGTT-CTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGT 307
consensus_8750#3 ------------------------------------------------------------
consensus_8750#0 AAAGTAGTTGGGTTTCTTATTGATAGAGATCGAATTTTCACTTGTGCAATTGGTTGACGT 540
consensus_8750#2 TAAAGAAAAAAATCAGTTTCCGAAAATGGTGATAACTCGTCGCTTATGGTTGTTAATCAT 78
consensus_8750#1 ACTGCTTCT--TACGTAATACAATTA----TCTCATTGT-GATATTATAAAAACACAACT 360
consensus_8750#3 ---GCTTTT--TACGTAAAACCATTA----TTTCCTTGT-GATATTATAAAAACCCCACT 50
consensus_8750#0 ACTGCTTCT--TACGTAATACAATTA----TCTCATTGT-GATATTATAAAAACACAACT 593
consensus_8750#2 AGCGATTACAGTACATAATATACCTGAAGGTTTTGCTGTTGGTATTGCATTTGGTGGACT 138
* ** *** *** * * * * *** * **** * ***
consensus_8750#1 TAAA-AATAAATAAG---CCCTTTTTCACATGCACATA-TCAGTTTTTTGGAAAT--TAC 413
consensus_8750#3 TAAA-AATAAATAAG---CCCTTTTTCACATGCACAAA-TCAGTTTTTTGGAAAT--TAC 103
consensus_8750#0 TAAA-AATAAATAAG---CCCTTTTTCACATGCACATA-TCAGTTTTTTGGAAAT--TAC 646
consensus_8750#2 TGGACAATATTCAAGAGCTACTTTTTCTCAAGCATGTAATCTGGCGATCGGTATTGCTAT 198
* * **** *** ******* ** *** * ** * * ** * * **
consensus_8750#1 TTATGTACACCTTAAAGTATTC-CTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTC 472
consensus_8750#3 TTATGTACCCCCTAAAGGATTC-CTATGAATACTGTTAATGGGGGGTAGGACCCGTAGTC 162
consensus_8750#0 TTATGTACCCCTTAAAGTATTC-CTATGATTACTGTTAATGGGTGCTAGTACCTGTAGTC 705
consensus_8750#2 TCAAAACTTTCCTGAAGGTTTGGCTGCCAGT-CTACCATTATATTCAGCTGGATATGGAT 257
* * * * *** ** ** * * ** * * * *
consensus_8750#1 TTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTANAGAACAAATATGTAGA 532
consensus_8750#3 TTTTGTCCTCATCTCGATTTTTAAAATCCCAATTTTTGACGTAAAGAACCAATATGTAGA 222
consensus_8750#0 TTTTGTCCTCATCTCGATTCTTATAATCCTAATTTTTGACGTAAAGAACAAATATGTAGA 765
consensus_8750#2 TTTTCATTAGTTTCTGGTTTGGACAATTG----TCTGGTCTTGTAGAACCA-TTTGCCGG 312
**** * * ** * *** * * * * * ***** * * ** *
consensus_8750#1 AAAAGCAGATCAGATAGTTNT-CTTATCTTCTTATGAATTTCTATTCTGGTTTA--TTCT 589
consensus_8750#3 AAAAGCCGATCCGAAAGTTTT-TTTATCTTTTTAAGAAATTAAAATTTGTTTTA--TTCT 279
consensus_8750#0 AAAAGCAGATCAGATAGTTTT-CTTATCTTCTTATGAATTTCTATTTTGTTTTA--TTCT 822
consensus_8750#2 GCTTATCGGTTGTCTGGCCGTACATTTCTTCCGAAGCTGCAGCCTTATGCGTTAGGTTTT 372
* * * * * **** * * * ** *** ** *
consensus_8750#1 GCTACTGATGCTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTC 649
consensus_8750#3 GTTACTGAAGTTCTTTTTAAACTTTAATAAAACTAAACTTAAAAATGTTTCAAATCTGTC 339
consensus_8750#0 GTTACTGATGTTCTTTTTATACTTTAATAAAACTATACTTAATATTGTTTCAAATCTGTC 882
consensus_8750#2 GCTGCAGGAGCTAAGTTA----TTCGTTGTAGTTGATGACATTATCCCTGAATCTCAGTC 428
* * * * * * ** ** * * * * * * * ** ***
consensus_8750#1 AGGTATATCTCGTATTTTTTTTATAT-TCATGGAGAATAAATAGTTT------------- 695
consensus_8750#3 CGGGAAATCTCGGATTTTTTTTAAAT-TCATGGAGAATAAATAGTTT------------- 385
consensus_8750#0 AGGTATATCTCGTATTTTTTTTATAT-TCATGGAAAATAAATAGTTTTAATTTTTAAAAA 941
consensus_8750#2 CAG-AGGTCATGGCCGACTATCATCTGTCATGGCCCTTATTG------------------ 469
* * ** * * * * * ****** **
consensus_8750#1 -------------------------
consensus_8750#3 -------------------------
consensus_8750#0 AAAAAAAAAAAAAAAAAAAAAAAAA 966
consensus_8750#2 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||