These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1128 fasta sequence [AGGTTATATTTATATAAAAACAAGAGGATTTCCAAATCCCCTTGAGGATCATTCCTGTACAACGTTATGAGATGTTATTGCTGGTAAAATCAATAATATCAGGATCTAGCCATACCAGTAAATGAAAATGTTGGTCGAATGCGTTTTGATAAAGCTTTTTCTGTTTCCTGTTTACGTTTGGCTTGAATTTCCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTNTATAATCAGTGAATTGCGTGGTTGCAACTGAGCTGCAGCAGGGTCCCAATCAACGAACACCACACGGGAGAGATCTCTATTAAGACATGACAAATCCTTGATATGTTTTCCTCCTTTATAGCGAGTTGCTTCGCGAAACAGCCGGAAGTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGT-TTGAGCCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC] [+] EMBL AI977046 [AGGTTATATTTATATAAAAACAAGAGGATTTCCAAATCCCCTTGAGGATCATTCCTGTACAACGTTATGAGATGTTATTGCTGGTAAAATCAATAATATCAGGATCTAGCCATACCAGTAAATGAAAATGTTGGTCGAATGCGTTTTGATAAAGCTTTTTCTGTTTCCTGTTTACGTTTGGCTTGAATTTCCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTNTATAATCAGTGAATTGCGTGG ] [+] EMBL CD160204 [ TCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTTTATAATCAGTGAATTGCGTGGTTGCAACTGAGCTGCAGCAGGGTCCCAATCAACGAACACCACACGGGAGAGATCTCTATTAAGACATGACAAATCCTTGATATGTTTTCCTCCTTTATAGCGAGTTGCTTCGCGAAACAGCCGGAAGTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAAC ] [-] EMBL CD065030 [ TGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTCTTCGACCA CTT ACTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGT TTGAGCCTATGGAGTAATATGCA ] [-] EMBL CD086158 [ CCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGGCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTT ] [-] EMBL CD097824 [ AATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGCGGTTGGTAATATGGGGGTTGTACTGGATTTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGT TTGAGCCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC] [-] EMBL CD097968 [ GGTCATCTCCAGAACAAGAGTATATGTTGGTTGCTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCTAAGTAAAACAATCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGTCTTGAGCCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC] consensusID : consensus_8761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGATACAACGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAACAAATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTCTGTCAACACTACAAAATTATGCATGGTTTCAAACGAATAAATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCACTAGAAAATTATAGATAATTAAGAACAGAGGAACATATGATAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTAGAGGTGAAAGGAGCGTCAACTTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTGAATACGAGATTAATTGATAGTGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGAATTAAGAAAGTCCCATTCCTAACCTTCCGGTACCGATGGTTTTGTACATGAAAAACTAATAGAAATTGAAATAGAACACATACTACTAAAAATAG] [-] EMBL CD114131 [TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGATACAACGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAACAAATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTCTGTCAACACTACAAAATTATGCATGGTTTCAAACGAATAAATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCACTAGAAAATTATAGATAATTAAGAACAGAGGAACATATGATAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTAGAGGTGAAAGGAGCGTCAACTTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTGAATACGAGATTAATTGATAGTGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGAATTAAGAAAGTCCCATTCCTAACCTTCCGGTACCGATGGTTTTGTACATGAAAAACTAATAGAAATTGAAATAGAACACATACTACTAAAAATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8761#0 ------------------------------AGGTTATATTTATATAAAAACAAGAGGATT 30 consensus_8761#1 TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGA 60 * * * * ** * ** *** consensus_8761#0 TCCAAATCCCCTTGAGGATCATTCCTGTACAACGTTATGAGATGTTATTGCTGGTAAAAT 90 consensus_8761#1 TACAA--CGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAAC 118 * *** * ** ** **** *** * * * * * * * * * *** consensus_8761#0 CAATAATATCAGGATCTAGCCATACCAGTAAATGAAAATGTTGGTCGAATGCGTTTTGAT 150 consensus_8761#1 AAATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTC-TGTCAACACTACAAAATTATGC 177 *** * * ** * * *** * *** * ** consensus_8761#0 AAAGCTTTTTCTGTTTCCTGTTTACGTTTGGCTTGAATTT-CCATAAGTTCTTCATGCTT 209 consensus_8761#1 ATGGTTTCAAACGAATAA-ATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTT 236 * * ** * * **** *** * * ** ******************* consensus_8761#0 TTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAAC 269 consensus_8761#1 TTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAAC 296 ************************************************************ consensus_8761#0 ATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCT-ATCAATTCTC 328 consensus_8761#1 ATCATCGACACTCCCCATTGCAATCACTAG-AAAATTATAGATAATTAAGAACAGAGGAA 355 ************************** * * * ** ** * * ** consensus_8761#0 TATCTGACTCATCGCCATT--CCAACGTTNTATAATCAGTGAATTGCGTGGTTGCAACTG 386 consensus_8761#1 CATATGA-TAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTA-GAGGT--GAAAGG 411 ** *** * * * ** * * * ** * ** ** * * *** ** * consensus_8761#0 AGCTGCAGCAGGGTCCCAATCAACGAACACCACACGGGAGAGATCTCTATTAAGACATGA 446 consensus_8761#1 AGCGTCAACTTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTG--AATACGAGA 469 *** ** * * * ***** ** * * ** ** ** ** consensus_8761#0 CAAATCCTTGATATGTTTTCCTCCTTTATAGCGAGTT-GCTTCGCGAAAC--AGCCGGAA 503 consensus_8761#1 TTAA---TTGATAGTGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGA 526 ** ****** ** * ** ***** * * * * * * ** * consensus_8761#0 GTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGA 563 consensus_8761#1 ATTAAGAAAGTCCCATTCCTAACCTTCCGGTACCGAT---GGTTTTGTA--CATGAAAAA 581 * ** *** * * ** * * * * ** * ** * * *** * * consensus_8761#0 TTCATTTGTATAGACAACAACCTCATAGTGA-GGAGATAGCTGTTGCAAAAACAAATCTA 622 consensus_8761#1 CTAATAGAAATTGAAATAGAACACATACTACTAAAAATAG-------------------- 621 * ** ** ** * * * **** * * **** consensus_8761#0 ACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCA 682 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 CATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGAT 742 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 CTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAAC 802 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 TGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTT 862 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 CGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAA 922 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 ACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACC 982 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 AAGACTGTTTAGATTTATCTTCTGATGAATCGTTTGAGCCTATGGAGTAATATGCACTAT 1042 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 ATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATA 1102 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 GAAGCATCAGTTGCGGATCACGTTCC 1128 consensus_8761#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||