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Schistosoma mansoni
cluster # 8761 cluster # 8761       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8761#0 length = 1128 sequences # 6  
consensus_8761#1 length = 621 sequences # 1  

consensusID : consensus_8761#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1128
fasta sequence
                              [AGGTTATATTTATATAAAAACAAGAGGATTTCCAAATCCCCTTGAGGATCATTCCTGTACAACGTTATGAGATGTTATTGCTGGTAAAATCAATAATATCAGGATCTAGCCATACCAGTAAATGAAAATGTTGGTCGAATGCGTTTTGATAAAGCTTTTTCTGTTTCCTGTTTACGTTTGGCTTGAATTTCCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTNTATAATCAGTGAATTGCGTGGTTGCAACTGAGCTGCAGCAGGGTCCCAATCAACGAACACCACACGGGAGAGATCTCTATTAAGACATGACAAATCCTTGATATGTTTTCCTCCTTTATAGCGAGTTGCTTCGCGAAACAGCCGGAAGTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGT-TTGAGCCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC]

[+] EMBL AI977046             [AGGTTATATTTATATAAAAACAAGAGGATTTCCAAATCCCCTTGAGGATCATTCCTGTACAACGTTATGAGATGTTATTGCTGGTAAAATCAATAATATCAGGATCTAGCCATACCAGTAAATGAAAATGTTGGTCGAATGCGTTTTGATAAAGCTTTTTCTGTTTCCTGTTTACGTTTGGCTTGAATTTCCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTNTATAATCAGTGAATTGCGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD160204             [                                                                                                                                                                                                                                          TCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTTTATAATCAGTGAATTGCGTGGTTGCAACTGAGCTGCAGCAGGGTCCCAATCAACGAACACCACACGGGAGAGATCTCTATTAAGACATGACAAATCCTTGATATGTTTTCCTCCTTTATAGCGAGTTGCTTCGCGAAACAGCCGGAAGTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD065030             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTCTTCGACCA       CTT  ACTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGT TTGAGCCTATGGAGTAATATGCA                                                                                          ]
[-] EMBL CD086158             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGGCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTT                                                                                                                              ]
[-] EMBL CD097824             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGCGGTTGGTAATATGGGGGTTGTACTGGATTTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGT TTGAGCCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC]
[-] EMBL CD097968             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTCATCTCCAGAACAAGAGTATATGTTGGTTGCTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCTAAGTAAAACAATCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGTCTTGAGCCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC]


>consensus_8761#0 AGGTTATATTTATATAAAAACAAGAGGATTTCCAAATCCCCTTGAGGATCATTCCTGTAC AACGTTATGAGATGTTATTGCTGGTAAAATCAATAATATCAGGATCTAGCCATACCAGTA AATGAAAATGTTGGTCGAATGCGTTTTGATAAAGCTTTTTCTGTTTCCTGTTTACGTTTG GCTTGAATTTCCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAAC TCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTT AGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTNTATA ATCAGTGAATTGCGTGGTTGCAACTGAGCTGCAGCAGGGTCCCAATCAACGAACACCACA CGGGAGAGATCTCTATTAAGACATGACAAATCCTTGATATGTTTTCCTCCTTTATAGCGA GTTGCTTCGCGAAACAGCCGGAAGTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAG ACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGAT AGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAAC TTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGG TAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTT TGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTT CGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTA GCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTC CATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGTTTGAG CCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGG GCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC



consensusID : consensus_8761#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence
                              [TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGATACAACGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAACAAATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTCTGTCAACACTACAAAATTATGCATGGTTTCAAACGAATAAATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCACTAGAAAATTATAGATAATTAAGAACAGAGGAACATATGATAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTAGAGGTGAAAGGAGCGTCAACTTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTGAATACGAGATTAATTGATAGTGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGAATTAAGAAAGTCCCATTCCTAACCTTCCGGTACCGATGGTTTTGTACATGAAAAACTAATAGAAATTGAAATAGAACACATACTACTAAAAATAG]

[-] EMBL CD114131             [TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGATACAACGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAACAAATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTCTGTCAACACTACAAAATTATGCATGGTTTCAAACGAATAAATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCACTAGAAAATTATAGATAATTAAGAACAGAGGAACATATGATAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTAGAGGTGAAAGGAGCGTCAACTTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTGAATACGAGATTAATTGATAGTGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGAATTAAGAAAGTCCCATTCCTAACCTTCCGGTACCGATGGTTTTGTACATGAAAAACTAATAGAAATTGAAATAGAACACATACTACTAAAAATAG]


>consensus_8761#1 TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGA TACAACGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAACAA ATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTCTGTCAACACTACAAAATTATGCATG GTTTCAAACGAATAAATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTTTTCA CGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCA TCGACACTCCCCATTGCAATCACTAGAAAATTATAGATAATTAAGAACAGAGGAACATAT GATAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTAGAGGTGAAAGGAGCGTCAAC TTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTGAATACGAGATTAATTGATAG TGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGAATTAAGAAAGTCCC ATTCCTAACCTTCCGGTACCGATGGTTTTGTACATGAAAAACTAATAGAAATTGAAATAG AACACATACTACTAAAAATAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8761#0      ------------------------------AGGTTATATTTATATAAAAACAAGAGGATT 30
consensus_8761#1      TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGA 60
                                                    *   *   * *  ** * **     ***  

consensus_8761#0      TCCAAATCCCCTTGAGGATCATTCCTGTACAACGTTATGAGATGTTATTGCTGGTAAAAT 90
consensus_8761#1      TACAA--CGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAAC 118
                      * ***  * ** ** ****  ***      *  * *   * *  *   * *   * *** 

consensus_8761#0      CAATAATATCAGGATCTAGCCATACCAGTAAATGAAAATGTTGGTCGAATGCGTTTTGAT 150
consensus_8761#1      AAATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTC-TGTCAACACTACAAAATTATGC 177
                       ***  * *    **       *  * ***  *     ***       *     **    

consensus_8761#0      AAAGCTTTTTCTGTTTCCTGTTTACGTTTGGCTTGAATTT-CCATAAGTTCTTCATGCTT 209
consensus_8761#1      ATGGTTTCAAACGAATAA-ATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTT 236
                      *  * **     *  *    **** ***     *  * ** *******************

consensus_8761#0      TTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAAC 269
consensus_8761#1      TTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAAC 296
                      ************************************************************

consensus_8761#0      ATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCT-ATCAATTCTC 328
consensus_8761#1      ATCATCGACACTCCCCATTGCAATCACTAG-AAAATTATAGATAATTAAGAACAGAGGAA 355
                      ************************** *   *  *    **  ** *   * **      

consensus_8761#0      TATCTGACTCATCGCCATT--CCAACGTTNTATAATCAGTGAATTGCGTGGTTGCAACTG 386
consensus_8761#1      CATATGA-TAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTA-GAGGT--GAAAGG 411
                       ** *** * *  *   **  * * * **  *  **     ** *  * ***   **  *

consensus_8761#0      AGCTGCAGCAGGGTCCCAATCAACGAACACCACACGGGAGAGATCTCTATTAAGACATGA 446
consensus_8761#1      AGCGTCAACTTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTG--AATACGAGA 469
                      ***  ** *     *    *    *****  **     *    *  **   ** **  **

consensus_8761#0      CAAATCCTTGATATGTTTTCCTCCTTTATAGCGAGTT-GCTTCGCGAAAC--AGCCGGAA 503
consensus_8761#1      TTAA---TTGATAGTGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGA 526
                        **   ******    **      * **   ***** *  * *  *     * * ** *

consensus_8761#0      GTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGA 563
consensus_8761#1      ATTAAGAAAGTCCCATTCCTAACCTTCCGGTACCGAT---GGTTTTGTA--CATGAAAAA 581
                       * ** *** *  * **    * *   * *  ** *    **   *  *  *** *   *

consensus_8761#0      TTCATTTGTATAGACAACAACCTCATAGTGA-GGAGATAGCTGTTGCAAAAACAAATCTA 622
consensus_8761#1      CTAATAGAAATTGAAATAGAACACATACTACTAAAAATAG-------------------- 621
                       * **    ** ** *   * * **** *     * ****                    

consensus_8761#0      ACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCA 682
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      CATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGAT 742
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      CTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAAC 802
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      TGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTT 862
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      CGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAA 922
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      ACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACC 982
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      AAGACTGTTTAGATTTATCTTCTGATGAATCGTTTGAGCCTATGGAGTAATATGCACTAT 1042
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      ATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATA 1102
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      GAAGCATCAGTTGCGGATCACGTTCC 1128
consensus_8761#1      --------------------------
                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)