These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 840 fasta sequence [ATACTTTATTGAACAACTATTGTTATTACTAGCACTCGCAGTGTTATATGAACGAACTATTCGTATTTAGTAGTAATAACCATAGCTTTATTTATATTTTGATATAAAAAAAGTTTTGTGTGTTTATCTTTTCTGTTTCGAATGAATCGTTTTTTTTTCTAAAAGAGAAAACCACAGCTGAACTTTGAAGCAAAACAATATTATGGGAGGAAAATATCATACAATTGGAACTAAGTTTTCATTGCGAACTGTTGATGTTGATGATCCTTTATCAAAAAGTTTATTCGTTCATTTGTTATGGAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGACTAAAGACTGTTATTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTTTTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCCTATGCACTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAAACACAACCAAAAAAT-GGACTC-ATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTTTGGGTTTTTTCTTACATCTGGTCGGTTGTTTTATAAAACGGTTTTCCGCATGGGGAATCTATTTCCTTCCCCGGGGTTAATTGGTATTGCGGGTTGCAATTTTTTAATAACACATTTGGG] [+] EMBL CD185370 [ATACTTTATTGAACAACTATTGTTATTACTAGCACTCGCAGTGTTATATGAACGAACTATTCGTATTTAGTAGTAATAACCATAGCTTTATTTATATTTTGATATAAAAAAAGTTTTGTGTGTTTATCTTTTCTGTTTCGAATGAATCGTTTTTTTTTCTAAAAGAGAAAACCACAGCTGAACTTTGAAGCAAAACAATATTATGGGAGGAAAATATCATACAATTGGAACTAAGTTTTCATTGCGAACTGTTGATGTTGATGATCCTTTATCAAAAAGTTTATTCGTTCATTTGTTATGGAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGACTAAAGACTGTTATTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGA TTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTTTTTTGTCTGTCACTAAGTGGAAAAA ] [-] EMBL CD194334 [ CTTTGAAGCAAAACAATATTATGGGAGGAAAATATCATACAATTGGAACTAAGTTTTCATTGCGAACTGTTGATGTTGATGATCCTTTATCAAAAAGTTTATTCGTTCATTTGTTATGGAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGACTAAAGACTGTTATTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTG TTTTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGT ] [-] EMBL CD131343 [ TATCAAAAAGTTTATTCGTTCATTTGTTATGGAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGACT AAGACTGTTATTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTG TTTTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCCTATGCACTTTCTTCTGTTGTTTACTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAA ] [+] EMBL CD130334 [ TTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTTTTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGNCCTATGCACTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAAACACCACNAAAAAATGGGACTC ATGTTCAGTAT ] [-] EMBL CD130283 [ TTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTTTTTT TCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCCTATGCACTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAAACACAACCAAAAAAT GGACTCAATGTTCAGTATA ] [+] EMBL AW146527 [ AATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTG TTTTTTGGCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCCTATGCACTTTCTTCTGTCGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAAACACAACCAAAAAAT GGACTCAATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTTTGGGTTTTTTCTTACATCTGGTCGGTTGTTTTATAAAACGGTTTTCCGCATGGGGAATCTATTTCCTTCCCCGGGGTTAATTGGTATTGCGGGTTGCAATTTTTTAATAACACATTTGGG] consensusID : consensus_8762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [CTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAACAAAAAAACACAACCAAAAAATGGACTCAATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTTTGTGTTTTTTTCTTACATCTGTTCGTTTGTTTTATATAACGTTTTTCCGCATGTGTATTCTATTTCCTTTCCTGTGTTTAATTGTTATTTGCGTGTTGCAAATTCTTTAATAACACATTTGTTACTACTGCACAATTATTTTTTAGCAATTTCGCTTTGTGCTTCGTTTAAGAATTAATTAACAATCATTATATTTATTTACTTTCAGTCTTTATAAATTGTTCTGTTCGGTATTACTATAGTATATACGTTTTTTATCTCGCTCCCTCTGTGTATGTACGCGTTATCACCAATTGCTATTGT] [-] EMBL AI739691 [CTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAACAAAAAAACACAACCAAAAAATGGACTCAATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTTTGTGTTTTTTTCTTACATCTGTTCGTTTGTTTTATATAACGTTTTTCCGCATGTGTATTCTATTTCCTTTCCTGTGTTTAATTGTTATTTGCGTGTTGCAAATTCTTTAATAACACATTTGTTACTACTGCACAATTATTTTTTAGCAATTTCGCTTTGTGCTTCGTTTAAGAATTAATTAACAATCATTATATTTATTTACTTTCAGTCTTTATAAATTGTTCTGTTCGGTATTACTATAGTATATACGTTTTTTATCTCGCTCCCTCTGTGTATGTACGCGTTATCACCAATTGCTATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8762#0 ATACTTTATTGAACAACTATTGTTATTACTAGCACTCGCAGTGTTATATGAACGAACTAT 60 consensus_8762#1 ------------------------------------------------------------ consensus_8762#0 TCGTATTTAGTAGTAATAACCATAGCTTTATTTATATTTTGATATAAAAAAAGTTTTGTG 120 consensus_8762#1 ------------------------------------------------------------ consensus_8762#0 TGTTTATCTTTTCTGTTTCGAATGAATCGTTTTTTTTTCTAAAAGAGAAAACCACAGCTG 180 consensus_8762#1 ------------------------------------------------------------ consensus_8762#0 AACTTTGAAGCAAAACAATATTATGGGAGGAAAATATCATACAATTGGAACTAAGTTTTC 240 consensus_8762#1 ------------------------------------------------------------ consensus_8762#0 ATTGCGAACTGTTGATGTTGATGATCCTTTATCAAAAAGTTTATTCGTTCATTTGTTATG 300 consensus_8762#1 ------------------------------------------------------------ consensus_8762#0 GAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGAC 360 consensus_8762#1 -------------------------------------------------CTTTCTTCTGT 11 * *** consensus_8762#0 TAAAGACTGTTATTTATATTCTAATTTTTC-----AAAAACCCTTCCCGTATATTTTTCT 415 consensus_8762#1 TGTTTATTGTTTTTTACGTTTGAAGTCACTGAACAAAAAAACACAACCAAAAAATGGACT 71 * * **** **** ** ** * ***** * ** * * * ** consensus_8762#0 GGTTGCCTACTATCTCTTCT-TGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCA 474 consensus_8762#1 CAATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAA---TTGTTTTGTGTTTTT 128 ** * *** * **** * ** ** *** ***** **** * * consensus_8762#0 ATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTT 534 consensus_8762#1 TTCTTACATCTGTTCGTTTGTTTTAT----ATAACGTTTTTCCGCATGTGTATTCTATTT 184 ******* * *** ** **** * * * ** * ** * * * * * *** consensus_8762#0 TTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCC 594 consensus_8762#1 CCTTTCCTGTGTTTAATTGTTATTTGCGTGTTGCAAATTCTTTAATAACACATTTGTTAC 244 ** **** *** ** * * *** * * * * * * * * * consensus_8762#0 TA-TGCACTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAA 653 consensus_8762#1 TACTGCACAATTATTTTTTAGCAATTTCGCTTTGTGCT-----TCGTTTAAG-AATTAAT 298 ** ***** * * * ** *** *** * * ** * ** ** ** consensus_8762#0 ACACAACCAAAAAATGGACTCATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACA 713 consensus_8762#1 TAACAATCATTATATTTATTTACTTTCAGT---CTTTATAAATT-GTTCTGTTCGGTATT 354 **** ** * ** * * * ****** *** * *** *** * * * ** consensus_8762#0 ATTGTTTTGGGTTTTTTCTTACATCTGGTCGGTTGTTTTATAAAACGGTTTTCCGCATGG 773 consensus_8762#1 ACTATAGTATATACGTTTTTTATCTCGCTCCCTCTGTGTATGTACGCGTTATCACCAATT 414 * * * * * ** ** * ** * * *** * *** ** ** consensus_8762#0 GGAATCTATTTCCTTCCCCGGGGTTAATTGGTATTGCGGGTTGCAATTTTTTAATAACAC 833 consensus_8762#1 GCTAT-TGT--------------------------------------------------- 422 * ** * * consensus_8762#0 ATTTGGG 840 consensus_8762#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||