cluster # 8763

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Schistosoma mansoni
cluster # 8763 cluster # 8763 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8763#0 length = 404 sequences # 2
consensus_8763#1 length = 390 sequences # 3

consensus_8763#2 length = 360 sequences # 1
consensus_8763#3 length = 212 sequences # 1

consensusID : consensus_8763#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 404
fasta sequence

                              [TTTAAAAGACCTGNGTCTGGGGCCAAATTACCTAGACAGCGTCTTGTAAATGTAACTGATCCCGTAGGGAACTTTTGAAGAACACGATGGAAATAGTGTAAGATGCAACGTAGCTTCTCAATTTCGACATGAAGTATCCGGCTTGTATTATATTTACTGTCGGATTTCGCTGATAGTAAGTGAGAGAAATTGATTTGAGGGAAATTAACATATTCTGCATCTTGACTGTGACAATTACGTCTAGGAAATGTGCAAAACAAAGCATTTGCCAAAAGACTGGCTGTCTGGAGTTGACTTAAAGTAAGTGAGCATTCTTTTCGGCATGACAGTAAAGGAATAGGTTTTGTAACAAAAATAGGCACATTTAGTGCTAACGAGCAAATTCCAGAGAGAGTGTTACCGAA]

[+] EMBL CD187775             [TTTAAAAGACCTGNGTCTGGGGCCAAATTACCTAGACAGCGTCTTGTAAATGTAACTGATCCCGTAGGGAACTTTTGAAGAACACGATGGAAATAGTGTAAGATGCAACGTAGCTTCTCAATTTCGACATGAAGTATCCGGCTTGTATTATATTTACTGTCGGATTTCGCTGATAGTAAGTGAGAGAAATTGATTTGAGGGAAATTAACATATTCTGCATCTTGACTGTGACAATTACGTCTAGGAAATGTGCAAAACAAAGCATTTGCCAAAAGACTGGCTGTCTGGAGTTGACTTAAAGTAAGTGAGCATTCTTTTCGGCATGACAGTAAAGGAATAGGTTTTGTAACAAAAATAGGCACATTTAGTGCTAACGAGCAAATTCCAGAGAGAGTGTTACCGAA]
[-] EMBL CD193906             [                                                                                                TGTAAGATGCAACGTAGCTTCTCAATTTTGACATGAAGTATCCGGCTTGTATTATATTTACTGTCGGATTTCGCTGATAGTAAGTGAGAGAAATTGATTTGAGGGAAATTAACATATTCTGCATCTTGACTGTGACAATTACGTCTAGGAAATGTACAAAACAAAGCATTTGCCAAAAGACTGGCTATCTGGAGTTGACTTA                                                                                                          ]




>consensus_8763#0
TTTAAAAGACCTGNGTCTGGGGCCAAATTACCTAGACAGCGTCTTGTAAATGTAACTGAT
CCCGTAGGGAACTTTTGAAGAACACGATGGAAATAGTGTAAGATGCAACGTAGCTTCTCA
ATTTCGACATGAAGTATCCGGCTTGTATTATATTTACTGTCGGATTTCGCTGATAGTAAG
TGAGAGAAATTGATTTGAGGGAAATTAACATATTCTGCATCTTGACTGTGACAATTACGT
CTAGGAAATGTGCAAAACAAAGCATTTGCCAAAAGACTGGCTGTCTGGAGTTGACTTAAA
GTAAGTGAGCATTCTTTTCGGCATGACAGTAAAGGAATAGGTTTTGTAACAAAAATAGGC
ACATTTAGTGCTAACGAGCAAATTCCAGAGAGAGTGTTACCGAA

consensusID : consensus_8763#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 390
fasta sequence

                              [GAATGATTAAAATCTCCAGTCCAACAGAAATCATCAGCATAGCCAGAACCTACGGAATACTGTTCAGCACCTTCAATAATAAGTGTTTCATCAAACCCCAGACGCTCAACAAATAAGCAACTGACCAACAATTCTGGTCGTAAAGCGAACACAATTTCTTCTTGTACACATCCACTATTTAAAACACCACCACCAAGATAACTGTTAGCGAAATCAACTTGTAAGGTGTTTGGACCAGCATCAGTAATTGATCCTGTGGCATTGACATGTAAACGCAACTGGTCAAATGTTAACTTGCTCTTCGACCAATCTGGTGCCAAATTACCTAGACAGCGTCTTGTAAATGTAACTGATCCCGTAGGGAACTTTTGAAGAACACGATGGAAATAG]

[-] EMBL CD137868             [GAATGATTAAAATCTCCAGTCCAACAGAAATCATCAGCATAGCCAGAACCTACGGAATACTGTTCAGCACCTTCAATAATAAGTGTTTCATCAAACCCCAGACGCTCAACAAATAAGCAACTGACCAACAATTCTGGTCGTAAAGCGAACACAATTTCTTCTTGTACACATCCACTATTTAAAACACCACCACCAAGATAACTGTTAGCGAAATCAACTTGTAAGGTGTTTGGACCAGCATCAGTAATTGATCCTGT                                                                                                                                     ]
[+] EMBL CD202782             [          tgttgCCAGTCCATAAAAAATCATCAGCATAGCCAGAACCTACGGAATACTGTTCAGCACCTTCAATAATAAGTGTTTCATCAAACCCCAGACGCTCAA                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD135050             [                                                                                                                        CTGACCAACAATTCTGGTCGTAAAGCGAACATAATTTCTTCTTGTACACATCCACTATTTAAAACACCACCACCAAGATAACTGTTAGCGAAATCAACTTGTAAGGTGTTTGGACCAGCATCAGTAATTGATCCTGTGGCATTGACATGTAAACGCAACTGGTCAAATGTTAACTTGCTCTTCGACCAATCTGGTGCCAAATTACCTAGACAGCGTCTTGTAAATGTAACTGATCCCGTAGGGAACTTTTGAAGAACACGATGGAAATAG]




>consensus_8763#1
GAATGATTAAAATCTCCAGTCCAACAGAAATCATCAGCATAGCCAGAACCTACGGAATAC
TGTTCAGCACCTTCAATAATAAGTGTTTCATCAAACCCCAGACGCTCAACAAATAAGCAA
CTGACCAACAATTCTGGTCGTAAAGCGAACACAATTTCTTCTTGTACACATCCACTATTT
AAAACACCACCACCAAGATAACTGTTAGCGAAATCAACTTGTAAGGTGTTTGGACCAGCA
TCAGTAATTGATCCTGTGGCATTGACATGTAAACGCAACTGGTCAAATGTTAACTTGCTC
TTCGACCAATCTGGTGCCAAATTACCTAGACAGCGTCTTGTAAATGTAACTGATCCCGTA
GGGAACTTTTGAAGAACACGATGGAAATAG

consensusID : consensus_8763#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [GNGCTGACTTTGTCATCACCATGTTTACCCCCTCTACAACCTTCACGAACACACAAAGTGTTCTTTCGTTGTGACAGTAACCCTGTAAAGCCACCTGTACCATATCCTGACGACTACCAGGATAAGTGGAACGNATTGTTTGTTCGTATGCCATGTTCTCCTGAAAGTGTTTATCCAGTTTATGAAGGTGGTGCTAATAGCCTTATTTCTAGGTGGGTTGTGATTGAAAAGGCATTGAGAAATAAGATAAAATCTTCTGACGAGTTAAAGGAAGCTATTCTCTCCTACAACTATCGTTTCAAATCCTACTGGAATTTTAAAACGTTAGAACAATTATGTATGCTGAATCTGATCCCCGAT]

[+] EMBL SMT14479             [GNGCTGACTTTGTCATCACCATGTTTACCCCCTCTACAACCTTCACGAACACACAAAGTGTTCTTTCGTTGTGACAGTAACCCTGTAAAGCCACCTGTACCATATCCTGACGACTACCAGGATAAGTGGAACGNATTGTTTGTTCGTATGCCATGTTCTCCTGAAAGTGTTTATCCAGTTTATGAAGGTGGTGCTAATAGCCTTATTTCTAGGTGGGTTGTGATTGAAAAGGCATTGAGAAATAAGATAAAATCTTCTGACGAGTTAAAGGAAGCTATTCTCTCCTACAACTATCGTTTCAAATCCTACTGGAATTTTAAAACGTTAGAACAATTATGTATGCTGAATCTGATCCCCGAT]




>consensus_8763#2
GNGCTGACTTTGTCATCACCATGTTTACCCCCTCTACAACCTTCACGAACACACAAAGTG
TTCTTTCGTTGTGACAGTAACCCTGTAAAGCCACCTGTACCATATCCTGACGACTACCAG
GATAAGTGGAACGNATTGTTTGTTCGTATGCCATGTTCTCCTGAAAGTGTTTATCCAGTT
TATGAAGGTGGTGCTAATAGCCTTATTTCTAGGTGGGTTGTGATTGAAAAGGCATTGAGA
AATAAGATAAAATCTTCTGACGAGTTAAAGGAAGCTATTCTCTCCTACAACTATCGTTTC
AAATCCTACTGGAATTTTAAAACGTTAGAACAATTATGTATGCTGAATCTGATCCCCGAT

consensusID : consensus_8763#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence

                              [CAATTACGTCTAGGAAATGTACAAAACAAAGCATTTGCCAAAAGACTGGCTATCTGGAATTGACTTAAAGTAAGTGAGCATTCTTTTCGGCATGACAGTAAAGGAATAGGCTTTAACTCGTCAGAAGATTTTATCTTATTTCTCAATGCCTTTTCAATCACAACCCACCTAGAAATAAGGCTATTAGCACCACCTTCATAAACTGGATAAAC]

[-] EMBL CD192223             [CAATTACGTCTAGGAAATGTACAAAACAAAGCATTTGCCAAAAGACTGGCTATCTGGAATTGACTTAAAGTAAGTGAGCATTCTTTTCGGCATGACAGTAAAGGAATAGGCTTTAACTCGTCAGAAGATTTTATCTTATTTCTCAATGCCTTTTCAATCACAACCCACCTAGAAATAAGGCTATTAGCACCACCTTCATAAACTGGATAAAC]




>consensus_8763#3
CAATTACGTCTAGGAAATGTACAAAACAAAGCATTTGCCAAAAGACTGGCTATCTGGAAT
TGACTTAAAGTAAGTGAGCATTCTTTTCGGCATGACAGTAAAGGAATAGGCTTTAACTCG
TCAGAAGATTTTATCTTATTTCTCAATGCCTTTTCAATCACAACCCACCTAGAAATAAGG
CTATTAGCACCACCTTCATAAACTGGATAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8763#0      TTTAAAAGACCTGNGTCTGGGGCCAAATTACCTAGACAGCGTCTTGTAAATGTAACTGAT 60
consensus_8763#3      ------------------------------------------------------------
consensus_8763#1      ----------------------------------------GAATGATTAAAATCTCCAGT 20
consensus_8763#2      -------------------------------GNGCTGACTTTGTCATCACCATGTTTACC 29
                                                                                  

consensus_8763#0      CCCGTAGGGAACTTTTGAAGAACACGATG----GAAATAGTGTAAGATGCAACGTAGCTT 116
consensus_8763#3      ------------------------------------------------------------
consensus_8763#1      CCAACAGAAATCATCAGCATAGCCAGAACCTACGGAATACTGTTCAGCACCTTCAATAAT 80
consensus_8763#2      CCCTCTACAACCTTCACGAACACACAAAG-------TGTTCTTTCGTTGTGACAGTAACC 82
                                                                                  

consensus_8763#0      CTCAATTTCGACATGAAGTATCCGGCTTGTATTATATTTACTGTCGGATTTCGCTGATAG 176
consensus_8763#3      ------------------------------------------------------------
consensus_8763#1      AAGTGTTTCATCAAACCCCAGACGCTCAACAAATAAGCAACTGACCAACAATTCTGGTCG 140
consensus_8763#2      CTGTAAAGCCACCTGTACCATATCCTGACGACTACCAGGATAAGTGGAACGNATTGTTTG 142
                                                                                  

consensus_8763#0      TAAGTGAGAGAAATTGATTTGAGGGAAATTAACATATTCTGCATCTTGACTGTGACAA-- 234
consensus_8763#3      -------------------------------------------------------CAA-- 3
consensus_8763#1      TAAAGCGAACACAATTTCTTCTTGTACACATCCACTATTTAAAACACCACCACCAAGA-- 198
consensus_8763#2      TTCGTATGCCATGTTCTCCTGAAAGTGTTTATCCAGTTTATGAAGGTGGTGCTAATAGCC 202
                                                                                  

consensus_8763#0      TTACGTCTAGG--AAATGTGCAAAACAAAGCATTTGCCAAAAGACTGGCTGTCTGGAGTT 292
consensus_8763#3      TTACGTCTAGG--AAATGTACAAAACAAAGCATTTGCCAAAAGACTGGCTATCTGGAATT 61
consensus_8763#1      TAACTGTTAGC--GAAATCAACTTGTAAGGTGTTTG------GACCAGC-ATCAGTAATT 249
consensus_8763#2      TTATTTCTAGGTGGGTTGTGATTGAAAAGGCATTGAGAAATAAGATAAA-ATCTTCTGAC 261
                      * *    ***                ** *  **                 **       

consensus_8763#0      GACTTAAAGTAAGTGAGCATTCTTTTCGGCATGACAGTAAAGGAATAGGTTTTG------ 346
consensus_8763#3      GACTTAAAGTAAGTGAGCATTCTTTTCGGCATGACAGTAAAGGAATAGGCTTTAACTCGT 121
consensus_8763#1      GATCCTGTGGCATTGACATGTAAACGCAACTGGTCAAATGTTAACTTGCTCTTCGACC-- 307
consensus_8763#2      GAGTTAAAGGAAGCTATTCTCTCCTACAAC-TATCGTTTCAAATCCTACTGGAA-----T 315
                      **      *  *   *          *  *    *                         

consensus_8763#0      TAACAAAAATAGGCACATTT----AGTGC--TAACGAGCAAATTCCA----GAGAGAGTG 396
consensus_8763#3      CAGAAGATTTTATCTTATTTCT-CAATGCCTTTTCAATCACAACCCACCTAGAAATAAGG 180
consensus_8763#1      AATCTGGTGCCAAATTACCTAGACAGCGTC-TTGTAAATGTAACTGATCCCGTAGGGAAC 366
consensus_8763#2      TTTAAAACGTTAGAACAATT-----ATGTATGCTGAATCTGATCCCCGAT---------- 360
                                      *  *       *        *    *                  

consensus_8763#0      TTACCGAA------------------------ 404
consensus_8763#3      CTATTAGCACCACCTTCATAAACTGGATAAAC 212
consensus_8763#1      TTTTGAAGAACACGATGGAAATAG-------- 390
consensus_8763#2      --------------------------------