These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1013 fasta sequence [AACACTCGGTACGAGGCCAAAATCTACCGATTCATCGACTAGCAGGAAATATGCGAATGAATGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTG-AA-AAGCTCGTCAGGTATTGACTAAATTATTGAAATCGACTACATCC-AATAGTCCTTG-AATAGAC-ATCTGACTGACTTTCTA-TTTGATTTGGAAGA-TTTTTTGACTTTC-TTCTTT-TATGATGGAAA-GTTGC-C-TTGATTT-T-AAACTA-GCCTATATTTGTTTGACAAACTAATTTATTATTTTATCTTTCTCATGAAAATACCATCGCAATTGATATTGGAATTTTTGAATATATCCCAATAGAT] [+] EMBL CD082288 [AACACTCGGTACGAGGCCAAAATCTACCGATTCATCGACTAGCAGGAAATATGCGAATGAATGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGG AAATGAATGGCGTCTGATAGTTGATAAGGCC AATATTGGCTC ACACTCANGGTC AATGAATC ANAAGAT CAAAGAATCCGAGTG ATCATGTGATGAACTTATTG AA AAGCTCGTCAGGTATGGACTAAA TA TGAAATCGACTACATCC AATAGTCCTTG AATAGAC ATCTGACTGACTTTCTA TTTGATTTGGAAGA TTTTTTGACTTTC TTCTTT TTTGAAGGAAA GTGGC C TTGATTT T AAACTA GCCTA ] [+] EMBL CD150094 [ CATAGTATACAATTGAATGAAATGAATGAAACAAATAAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACGAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCT ] [+] EMBL CD082340 [ gagaccCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTG AANAAGCTCGTCAGGTATTGACTAAATTATTGAAATCGACTACAT ] [+] EMBL AI977227 [ ATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAANCCGAGTGAATCATGTGAT ] [-] EMBL CD075894 [ ACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTGAAA AAGCTCGTCAGGTATTGACTAAATTATTGAAATCGACTACATCCAAATAGTCCTTGTAATAGACAATCTGACTGACTTTCTATTTTGATTTGGAAGATTTTTTTGACTTTCTTTCTTTATATGATGGAAATGTTGCACTTTGATTTATAAAACTATGCCTATAT ] [-] EMBL CD075939 [ ATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTGAAA AAGCTCGTCAGGTATTGACTAAATTATTGAAATCGACTACATCCAAATAGTCCTTGTAATAGACAATCTGACTGACTTTCTATTTTGATTTGGAAGATTTTTTTGACTTTCTTTCTTTATATGATGGAAATGTTGCACTTTGATTTATAAAACTATGCCTATATTTGTTTGACAAACTAATTTATTATTTTATCTTTCTCATGAAAATACCATCGCAATTGATATTGGAATTTTTGAATATATCCCAATAGAT] consensusID : consensus_8765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [CGGGGCTGGGGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAGGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGGTATGATTCATTAGACACTTATTTCATAATGTTTATTTACATGATTACTTTATCAATGAATTAAGATTTTATAGATTTATCAAATCAGTCTAACGTCAAAGGGGATATTCAAACAACCAATACAAAAATAAACCAATCAAACGTTATTTTTTGTCCGACTGATGTATACGTATTTGTAAATACTTTCTCGTGATTTACCTTTGGGTCGAATAAAATATGAGAACGTTTTTGAGTTTTATAAATTAGGTTGATTTCTCGCTCACCTTATCTGTAACTGACAATTTTCGGATT] [-] EMBL CD200533 [CGGGGCTGGGGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAGGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGGTATGATTCATTAGACACTTATTTCATAATGTTTATTTACATGATTACTTTATCAATGAATTAAGATTTTATAGATTTATCAAATCAGTCTAACGTCAAAGGGGATATTCAAACAACCAATACAAAAATAAACCAATCAAACGTTATTTTTTGTCCGACTGATGTATACGTATTTGTAAATACTTTCTCGTGATTTACCTTTGGGTCGAATAAAATATGAGAACGTTTTTGAGTTTTATAAATTAGGTTGATTTCTCGCTCACCTTATCTGTAACTGACAATTTTCGGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8765#0 AACACTCGGTACGAGGCCAAAATCTACCGATTCATCGACTAGCAGGAAATATGCGAATGA 60 consensus_8765#1 ---------------------------------------------------CGGGGCTGG 9 * * ** consensus_8765#0 ATGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAA 120 consensus_8765#1 G-GAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAA 68 ********************************************************** consensus_8765#0 CAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTAT 180 consensus_8765#1 CAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTAT 128 ************************************************************ consensus_8765#0 CAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAA 240 consensus_8765#1 CAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAG 188 *********************************************************** consensus_8765#0 GAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGC 300 consensus_8765#1 GAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGGTATGA------------ 236 ****************************************** * *** consensus_8765#0 CTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCT 360 consensus_8765#1 -TTCATTAGACACTTATT-TCATAATGTTTAT-------------------TTACATGAT 275 * ** * ** * * *** ** ** ** *** * consensus_8765#0 ACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTG 420 consensus_8765#1 -TACTTTATCAATGAATT-----AAGATTTTATAGATTTATCAAATCAGTCTA-ACGTCA 328 *** * * *** * * ** * * ** * * * * ** * consensus_8765#0 AAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTG 480 consensus_8765#1 AAGGGGATATTCAAACAACCAATACAA--AAATAAACC---AATCAAACGTTATTTTTTG 383 *** * ****** ** * ** **** ** ** ** * * ** ** consensus_8765#0 AATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAA 540 consensus_8765#1 TCCGACTGATGTATACGTATTTGTAAATACTTTCTCGTGATTTACCTTTGGGTC---GAA 440 ** * * * * ** * * * * * ******* ** ** ** consensus_8765#0 TACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGG 600 consensus_8765#1 TAAAATATGAGAACGTTTTTGAGTTTTATAAATTAGGTTGAT--TTCTCGCTCACCTTAT 498 ** ** *** * ******* *** * * * * *** * * consensus_8765#0 ATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGG 660 consensus_8765#1 CTGTAACT-----GACAATTTTCGGATT-------------------------------- 521 *** ** *** * * * * * consensus_8765#0 AAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAA 720 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 TGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTGAAAAGCTCG 780 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 TCAGGTATTGACTAAATTATTGAAATCGACTACATCCAATAGTCCTTGAATAGACATCTG 840 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 ACTGACTTTCTATTTGATTTGGAAGATTTTTTGACTTTCTTCTTTTATGATGGAAAGTTG 900 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 CCTTGATTTTAAACTAGCCTATATTTGTTTGACAAACTAATTTATTATTTTATCTTTCTC 960 consensus_8765#1 ------------------------------------------------------------ consensus_8765#0 ATGAAAATACCATCGCAATTGATATTGGAATTTTTGAATATATCCCAATAGAT 1013 consensus_8765#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||