cluster # 8767

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Schistosoma mansoni
cluster # 8767 cluster # 8767 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8767#0 length = 1001 sequences # 5

consensus_8767#1 length = 613 sequences # 1
consensus_8767#2 length = 550 sequences # 1

consensusID : consensus_8767#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1001
fasta sequence

                              [GAGCCATATTCGGCACGACGTAGCAAACCAACTGAGATGGATATGGATATTCACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGAACGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATTTAACTTCGCAGCCTACAAATTTTGCCTTGTTCCAGGGGGGGAAAAGTCTCGTCTTATTGCTGGTCTTCTATTGTGTTTTATATTTACTTGGAAATAACTATACATTTCATATTATTATATCATGCATTTATATTGTTGCTTGTTTGCGCTNTTAATTAGATACACATATTTCTTGTCCGGTTCCTTTTTCTTTCTTT-AAATTATCATTGAAGGAGACAAGANAGGAAAATANNNAG-TTCTAATTATTCCACTTTTATTGATTTCAAGTAATGTATAATTAGTTGGTCTTTATGTTTAGTAAACATTTGCAAAATTATTAAAAACCAATATATATTTT]

[+] EMBL CD081648             [GAGCCATATTCGGCACGACGTAGCAAACCAACTGAGATGGATATGGATATTCACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGAACGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATTTAACTTCGCAGCCTACAAATTTTGCCTTGTTCCAGGGGGGGAAAAGTCTCGTCTTATTGCTGGTCTTCTATTGTGTTTTATATTTACTTGGAAATAACTATACATTTCATATTATTATATCATGCATTTATATTGTTGCTTGTTTGCGCTNTTAATTAGATACACATATTTCTTGTCCGGTTCCTTTTTCTTTCTTT AAATTATCATTGAAGGAGACAAGANAGGAAAATANNNAG TT                                                                                                   ]
[-] EMBL CD098177             [                                                                                                                                                                                                                            GGTTGAACGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACGTGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATTTAACTTCGCAGCCTACAAATTTT                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD072907             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATTTAACTTCGCAGCCTACAAATTTTGCCTTGTTCCAGGGGGGGAAAAGTCTCGTCTTATTGCTGGTCTTCTATTGTGTTTTATATTTACTTGGAAATAACTATACATTTCATATTATTATATCATGCATTTATATTGTTGCTTGTTTGCGCTTTTAATTAGATACACATATTTCTTGTCCGGTTCCTTTTTCTTTCTTTCAATTTATCATTGAAGGAGACAAGAAAGGAAAATA AAAGTTTCTAATTATTCCACTTTTATTGATTTCAAGTAATGTATAATTAGTTGGTCTTTATGTTTAGTAAACATTTGCAAAATTATTAAAAACCAATATATATTTT]
[-] EMBL CD120606             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATT                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD120636             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TACCTGATATGCTGTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACATCATT                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_8767#0
GAGCCATATTCGGCACGACGTAGCAAACCAACTGAGATGGATATGGATATTCACTTGAAG
CCTCTTCATTTTAAGATGATTGAAATAGCAAACTTCAGGGTTGGAGCAATGTCTGTACGG
AAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCT
TCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGAACGCTAACAAAGTC
TTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCT
TGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAAC
AAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAA
GAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCA
GTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTT
CATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGA
ATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACAT
CATTTAACTTCGCAGCCTACAAATTTTGCCTTGTTCCAGGGGGGGAAAAGTCTCGTCTTA
TTGCTGGTCTTCTATTGTGTTTTATATTTACTTGGAAATAACTATACATTTCATATTATT
ATATCATGCATTTATATTGTTGCTTGTTTGCGCTNTTAATTAGATACACATATTTCTTGT
CCGGTTCCTTTTTCTTTCTTTAAATTATCATTGAAGGAGACAAGANAGGAAAATANNNAG
TTCTAATTATTCCACTTTTATTGATTTCAAGTAATGTATAATTAGTTGGTCTTTATGTTT
AGTAAACATTTGCAAAATTATTAAAAACCAATATATATTTT

consensusID : consensus_8767#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTTACAATCA]

[+] EMBL CD078265             [ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAATATTTTACAATCA]




>consensus_8767#1
ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAA
CTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATC
AACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTA
CGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTGTCG
TGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTT
GTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAA
ACTACCTTTACCAACTGCTGAAATACGTCCAGTTCAGTGTTTACAAGAAGGTCGTACCAA
TACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACAACC
GGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACG
TCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTGAATATTCCTTGAAAA
TATTTTACAATCA

consensusID : consensus_8767#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTCTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACGGGNACCCACCGCCCCCCCCCCCCCCCCCCCGGNGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACACCNGGNNCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAG]

[+] EMBL CD078347             [ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTCTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAAACTACGGGNACCCACCGCCCCCCCCCCCCCCCCCCCGGNGTTTACAAGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACACCNGGNNCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTACGTCATGTCAG]




>consensus_8767#2
ACTTGAAGCCTCTTCATTTTAAGATGATTGAAATAGCAGTACGTTAATTCTCCGTAGTAA
CTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGGAAGTGTCAGTTATC
AACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCTTCAGCATCTCAGTA
CGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTCTTTCAGTATTCTCG
TGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCTTGTCTGGATGAGTT
GTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAACAAAAATGGTCCCAA
ACTACGGGNACCCACCGCCCCCCCCCCCCCCCCCCCGGNGTTTACAAGAAGGTCGTACCA
ATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATCAGTACAATCACACC
NGGNNCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGTTCATAAAAATTTAC
GTCATGTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8767#1      ------------ACTTGAAGCCTCT--TCATTTTAAGATGATTGAAATAGCAGTACGTTA 46
consensus_8767#2      ------------ACTTGAAGCCTCT--TCATTTTAAGATGATTGAAATAGCAGTACGTTA 46
consensus_8767#0      GAGCCATATTCGGCACGACGTAGCAAACCAACTGAGATGGATATGGATATTCACTTGAAG 60
                                   *  ** *   *    **  * *    ***    ***       *   

consensus_8767#1      ATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGG 106
consensus_8767#2      ATTCTCCGTAGTAACTTAAATGAAGTCAAGAACTTCAGGGTTGGAGCAATGTCTGTACGG 106
consensus_8767#0      CCTCTTCATTTTAAGATGATTGAAATAGCAAACTTCAGGGTTGGAGCAATGTCTGTACGG 120
                        *** * *  ***  * * **** *    ******************************

consensus_8767#1      AAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCT 166
consensus_8767#2      AAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCT 166
consensus_8767#0      AAGTGTCAGTTATCAACCATTGCAGATTCGGTCCTTATACTGAATTGGGTTGGGTCTTCT 180
                      ************************************************************

consensus_8767#1      TCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTC 226
consensus_8767#2      TCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGATCGCTAACAAAGTC 226
consensus_8767#0      TCAGCATCTCAGTACGTTAAAGAATTAAAGGACTCAACATGGTTGAACGCTAACAAAGTC 240
                      ********************************************** *************

consensus_8767#1      TTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCT 286
consensus_8767#2      TTTCAGTATTCTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCT 286
consensus_8767#0      TTTCAGTATTGTCGTGAGAGTCTTCCTGAACATGTTGAATGGTTACGCTCATGGCTTTCT 300
                      ********** *************************************************

consensus_8767#1      TGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAAC 346
consensus_8767#2      TGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAAC 346
consensus_8767#0      TGTCTGGATGAGTTGTGCATAGTTGTTGGAGAGCATTTTCCATACGGTCTAACATGGAAC 360
                      ************************************************************

consensus_8767#1      AAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTC-AGTGTTTACA 405
consensus_8767#2      AAAAATGGTCCCAAACTACGGGNACCCACCGCCCCCCCCCCCCCCCCCCCGGNGTTTACA 406
consensus_8767#0      AAAAATGGTCCCAAACTACCTTTACCAACTGCTGAAATACGTCCAGTTC-AGTGTTTACA 419
                      *******************    *** ** **       *  **    *  * *******

consensus_8767#1      AGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATC 465
consensus_8767#2      AGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATC 466
consensus_8767#0      AGAAGGTCGTACCAATACACATGGAAGAACGTCAAAAAAGGTTTTTCATCCTAAATTATC 479
                      ************************************************************

consensus_8767#1      AGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGT 525
consensus_8767#2      AGTACAATCACACCNGGNNCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGT 526
consensus_8767#0      AGTACAATCACAACCGGATCCAGTTGATGTAACTAAGTTGTTTGCTGAAATAGCAAGTGT 539
                      ************ * **  *****************************************

consensus_8767#1      TCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTG 585
consensus_8767#2      TCATAAAAATTTACGTCATGTCAG------------------------------------ 550
consensus_8767#0      TCATAAAAATTTACGTCATGTCAGTGTACCTGATATACTCTGATATGGAGAATTCTAGTG 599
                      ************************                                    

consensus_8767#1      AATATTCCTTGAAAATATTTTACAATCA-------------------------------- 613
consensus_8767#2      ------------------------------------------------------------
consensus_8767#0      AATATTCCTTGAAAATATTTACAAATCAGTTGGTCCAAGTGTGATGGTTACAGTCACACA 659
                                                                                  

consensus_8767#1      ------------------------------------------------------------
consensus_8767#2      ------------------------------------------------------------
consensus_8767#0      TCATTTAACTTCGCAGCCTACAAATTTTGCCTTGTTCCAGGGGGGGAAAAGTCTCGTCTT 719
                                                                                  

consensus_8767#1      ------------------------------------------------------------
consensus_8767#2      ------------------------------------------------------------
consensus_8767#0      ATTGCTGGTCTTCTATTGTGTTTTATATTTACTTGGAAATAACTATACATTTCATATTAT 779
                                                                                  

consensus_8767#1      ------------------------------------------------------------
consensus_8767#2      ------------------------------------------------------------
consensus_8767#0      TATATCATGCATTTATATTGTTGCTTGTTTGCGCTNTTAATTAGATACACATATTTCTTG 839
                                                                                  

consensus_8767#1      ------------------------------------------------------------
consensus_8767#2      ------------------------------------------------------------
consensus_8767#0      TCCGGTTCCTTTTTCTTTCTTTAAATTATCATTGAAGGAGACAAGANAGGAAAATANNNA 899
                                                                                  

consensus_8767#1      ------------------------------------------------------------
consensus_8767#2      ------------------------------------------------------------
consensus_8767#0      GTTCTAATTATTCCACTTTTATTGATTTCAAGTAATGTATAATTAGTTGGTCTTTATGTT 959
                                                                                  

consensus_8767#1      ------------------------------------------
consensus_8767#2      ------------------------------------------
consensus_8767#0      TAGTAAACATTTGCAAAATTATTAAAAACCAATATATATTTT 1001