These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 864 fasta sequence [TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATTGAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATTTTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGTCTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGCAAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATTATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGGAGTCGTGGAATATCCATTCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAATAATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGTTATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT] [+] EMBL CD074826 [TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATTGAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATTTTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGTCTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGCAAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATTATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGGAGTCGTGGAATATCCATTCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAATAATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGTTATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTNTTAAGTAATTTCTCTAAATATGCCAC ] [-] EMBL CD195633 [ TTCTTTTGTTGGATAGTTATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAG ] [-] EMBL CD096146 [ AAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT] [-] EMBL CD096155 [ AAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT] [-] EMBL CD096144 [ AAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT] consensusID : consensus_8768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [TTNNTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTTATTATAACCAGTTGGTNNNNNNNNNNNNNNNNNTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGCAATCTAGCCACTTGTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAATGAATAAACTAAACCATTTTGAAAAACTGCATATAATTTTTGTTCACCACCAAGTTCATGTAGTAGATACATATGTTTGATTTCATCCCACCGGTTAACAATAAAATCTGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGTTCATCTATTTTATTATCATGATCTAAACGAATAACAATATTAGATAAACCTTCTTCTAATGGTTTCACTTTTATATACTCTTTTGACCAAGTAGGAAAATTGATTTTATAATTTTCCAAAAATACGGATATCAATGACTGGAATAGTATTTGGTATAAAAGGC] [-] EMBL CD081000 [TTNNTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTTATTATAACCAGTTGGTNNNNNNNNNNNNNNNNNTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGCAATCTAGCCACTTGTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAATGAATAAACTAAACCATTTTGAAAAACTGCATATAATTTTTGTTCACCACCAAGTTCATGTAGTAGATACATATGTTTGATTTCATCCCACCGGTTAACAATAAAATCTGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGTTCATCTATTTTATTATCATGATCTAAACGAATAACAATATTAGATAAACCTTCTTCTAATGGTTTCACTTTTATATACTCTTTTGACCAAGTAGGAAAATTGATTTTATAATTTTCCAAAAATACGGATATCAATGACTGGAATAGTATTTGGTATAAAAGGC] consensusID : consensus_8768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [ATTGATATCCGTATTTTGGATGGTAATGATCAAGAAAATATTTGGAAAATTATAAAATCAATTTTTCCTACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAAGGTTTATCTAATATTGTTATTCGTTTAGATCATGATAATAAAATAGATGAACCTAAAACTATTCTTATGAGAATTCGAACAAAATTAGCAGATTTTATTGTTAACCGGTGGGATGAAATCAAACATATGTATCTACTACATGAACTTGGTGGTGAACAAAATTATATGCAGTTTTTCAAAATGGTTTAGTTTATTCATTTATTAATGGATCAACTATAAGTGTGGATAAATTTTCAATGTCAAAGTATAGTGAATTAATAATTGAACAAGTGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGCTAACTTTATTCCCCTA] [+] EMBL AI067729 [ATTGATATCCGTATTTTGGATGGTAATGATCAAGAAAATATTTGGAAAATTATAAAATCAATTTTTCCTACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAAGGTTTATCTAATATTGTTATTCGTTTAGATCATGATAATAAAATAGATGAACCTAAAACTATTCTTATGAGAATTCGAACAAAATTAGCAGATTTTATTGTTAACCGGTGGGATGAAATCAAACATATGTATCTACTACATGAACTTGGTGGTGAACAAAATTATATGCAGTTTTTCAAAATGGTTTAGTTTATTCATTTATTAATGGATCAACTATAAGTGTGGATAAATTTTCAATGTCAAAGTATAGTGAATTAATAATTGAACAAGTGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGCTAACTTTATTCCCCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8768#0 TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATT 60 consensus_8768#1 -TTNNTAAGT-AATTTCTCTAAATATGCC----ACTTCATTCAAGAGGACTGCTTTTGAA 54 consensus_8768#2 ------------------------------------------------------------ consensus_8768#0 GAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATT 120 consensus_8768#1 GGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTT--ATTATAACCAGTTGGTN 112 consensus_8768#2 -----------------------------------------------------ATTGATA 7 ** * consensus_8768#0 TTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGT 180 consensus_8768#1 NNNNNNNNNNNNNNNNTCGT-ATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGAT 171 consensus_8768#2 TCCGTATTTTGGATGGTAATGATCA-AGAAAATATTTGGAAAATTATAAAATCAATTTTT 66 * * * * *** ** ** * consensus_8768#0 CTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGC 240 consensus_8768#1 GAATCGTTGACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGC 231 consensus_8768#2 CC-TACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAA--GGTTTATCTAAT 123 * *** * * * * * * * * consensus_8768#0 AAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATT 300 consensus_8768#1 AATCT-AGCCACTT-GTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAAT 289 consensus_8768#2 ATTGTTATTCGTTTAGATCA--TGATAATAAAATAGA---TGAACCTAAAACT-ATTCTT 177 * * * * ** *** * * * ** * * * * * * ** * consensus_8768#0 ATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGG 360 consensus_8768#1 GA-ATAAACTAAACCATTTTGAAAAACT------GCATATA-ATTTTTGTTCACCACCAA 341 consensus_8768#2 ATGAGAATTCGAACAAAATTAGCAGATT---------------TTATTGTTAACCGGTGG 222 * * ** * ** * * * * consensus_8768#0 AGTCGTGGAATATCCAT-TCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAAT 419 consensus_8768#1 GTTCATGTAGTAGATACATATGTTTGATTTCATCCCACCGGTTAA---------CAATAA 392 consensus_8768#2 GATGAAATCAAACATATGTATCTACTACATGAACTTGGTGGTGAA---------CAAAAT 273 * * * * * * * * * ** ** * consensus_8768#0 AATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGT 479 consensus_8768#1 AATCTGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGTTCATCTATT---TTAT 449 consensus_8768#2 TATATGCAGTTTTTCAAAATGGTTTAGTTTATTCATTT----ATTAATGGATC----AAC 325 ** * ** * ** * * consensus_8768#0 TATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATG 539 consensus_8768#1 TATCATGATCTAAACGAATAACAATATTAGAT-----AAACCTTCTTCTAATG------G 498 consensus_8768#2 TATAAGTGTGGATAA-ATTTTCAATGTCAAAGT---ATAGTGAATTAATAATTGAACAAG 381 *** * * * * * * * * * * * *** * consensus_8768#0 CTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAG 599 consensus_8768#1 TTTCACTTTTATATACTCTTTTGACCAAGT-AGGAAAATTGATTTTATAATTTTCC--AA 555 consensus_8768#2 TGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGCTAACTTTATTCCCCTA----- 436 * ** ** * * * * * * * * consensus_8768#0 GCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGAT 659 consensus_8768#1 AAATACGGATATCAATGACTGGAATAGTATT-TGGTATAAAAGGC--------------- 599 consensus_8768#2 ------------------------------------------------------------ consensus_8768#0 TTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATT 719 consensus_8768#1 ------------------------------------------------------------ consensus_8768#2 ------------------------------------------------------------ consensus_8768#0 CATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAA 779 consensus_8768#1 ------------------------------------------------------------ consensus_8768#2 ------------------------------------------------------------ consensus_8768#0 TCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGA 839 consensus_8768#1 ------------------------------------------------------------ consensus_8768#2 ------------------------------------------------------------ consensus_8768#0 CTTCACTAGGGAATAAACGTAGCAT 864 consensus_8768#1 ------------------------- consensus_8768#2 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||