These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGGGGGAAACAGATCTGTCCTTTTTACCTAAAGAATCGATGCATATATGGCGATCGATGCATTAATTCTCATTGTTTACCAGAAAACAAATTGTCCCAGACTTCAAAATCTATTCCTTGTAAGTTCTATCTACAAGGCTACTGTCACAATGGGATCAAATGTACATTTTCACACAATATAAATGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAAGGATAAGCTACAATTCTATAACAAATGATCAAATATGGCCTACTCAAACAAGTGTAAACTACCTGAGCGGAGTCCACGTGATTGTTGTAACCAGTGGTTAGAGACTCAAAATCGTTTGGAATGGCACAGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTNTTACATAAATCACANATAACTTACTNNTCTCCATGTACTTGGGATACGCGCATCANATATNGTATCTAATGCATCACGTAAACTNTNCGACATTATAATCGTACCATCGATTGCTAA-TTTAAATCACTCNATGNTGTACGAACATTGNNATAT-ACACGTNGCATACGATCAAACTTCTGNTTTNAAAANTATATGAGNNGNNNTTAAATGATCCATTTAANTNAATCGTTCTTTACCCCTGATCNGNNATANGA] [+] EMBL CD080602 [CTCGAGGCCAAAAATTCGGCACGAGGGGGAAACAGATCTGTCCTTTTTACCTAAAGAATCGATGCATATATGGCGATCGATGCATTAATTCTCATTGTTTACCAGAAAACAAATTGTCCCAGACTTCAAAATCTATTCCTTGTAAGTTCTATCTACAAGGCTACTGTCACAATGGGATCAAATGTACATTTTCACACAATATAAATGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAAGGATAAGCTACAATTCTATAACAAATGATCAAATATGGCCTACTCAAACAAGTGTAAACTACCTGAGCGGAGTCCACGTGATTGTTGTAACCAGTGGTTAGAGACTCAAAATCGTTTGGAATGGCACAGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTNTTACATAAATCACANATAACTTACTNNTCTCCATGTACTTGGGATACGCGCATCANATATNGTATCTAATGCATCACGTAAACTNTNCGACATTATAATCGTACCATCGATTGCTAA TTTAAATCACTCNATGNTGTACGAACATTGNNATAT ACACGTNGCATACGATCAAACTTCTGNTTTNAAAANTATATGAGNNGNNNTTAAATGATCCATTTAANTNAATCGTTCTTTACCCCTGATCNGNNATANGA] [-] EMBL CD073090 [ TGTAACCAGTGGTTAGAGACTCAAAATCGTTTGGAATGGCACAGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTTTCTCCATGTACTTGGGATACGCGCATCAAATATGTTATCTAATGCATCACGTAAACTTTCCGACATTATAATCGTACCATCGATTGCTAATTTTAAATCACTCAATGTTGTACGAACATTG GATATAACACGTTGCATACGATC AACTTCTTGTTTTAAAAATATATGA ] consensusID : consensus_8769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 824 fasta sequence [GAGCCAAAAATTCGGCACGAGGGCAAGGGGAAGCCATTGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTTTCTCCATGTACTTGGGATACGCGCATCANATATGTTATCTAATGCATCACGTAAACTTTCCGACATTATAATCGTACCATCGATTGCTAATTNTAAATCACTCAATGTTGTACGAACATTGGATATAACACGTTGCATACGATCAACTTCTT-TGTNTAAAATATATGAAGTGGTTNT-AATGATCCCATTTAANTAAATCG-TCTTTTACCTGGNATCANNGAT-AAGATATGAGNA] [+] EMBL CD082666 [GAGCCAAAAATTCGGCACGAGGGCAAGGGGAAGCCATTGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTTTCTCCATGTACTTGGGATACGCGCATCANATATGTTATCTAATGCATCACGTAAACTTTCCGACATTATAATCGTACCATCGATTGCTAATTNTAAATCACTCAATGTTGTACGAACATTGGATATAACACGTTGCATACGATCAACTTCTT TGTNTAAAATATATGAAGTGGTTNT AATGATCCCATTTAANTAAATCG TCTTTTACCTGGNATCANNGAT AAGATATGAGN ] [+] EMBL CD155100 [ TGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACANATAACTTACTTT ] [+] EMBL CD154964 [ TGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTT ] [-] EMBL CD076262 [ TCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTTTCTCCATGTACTTGGGATACGCGCATCAAATATGTTATTTAATGCATCACGTAAACTTTCCGACATTATAATCGTACCATCGATTGCTAATTTTAAATCACTCAATGTTGTACGAACATTGGATATAACACGTTGCATACGATCAACTTCTTGTTTTAAAAATATATGAAGTGGTTTTAAATGAT CCATTTTAATTAATCGTTCTTTTACCTGGATTCAGGAATAAAGATATGAGta] consensusID : consensus_8769#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [ATTTTAATTGAAATGACGTAGAACTTTTCATTTATTCAGCCAATTCATCTCATAACTACCGCAGAAATTTGAAGGAAGCCATTGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGTACGATTCCTTTATCTTCACCGTCAGAAAATTTATGTACATTTTCTTAAAAATGAACTGTATTATTCTTGTATAATGTCTCTAAAATAACTCTATATCAATTCATTTACTTATTGATTACAAACTATAGCCCAATATTTTCGTGTCCCAGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAAGGATAAGCTANCATTCTATAACANATGATCAAATATGGCCTACTCANAACAGTGTAAACTACCTGAGCGGAGT] [+] EMBL CD078627 [ATTTTAATTGAAATGACGTAGAACTTTTCATTTATTCAGCCAATTCATCTCATAACTACCGCAGAAATTTGAAGGAAGCCATTGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGTACGATTCCTTTATCTTCACCGTCAGAAAATTTATGTACATTTTCTTAAAAATGAACTGTATTATTCTTGTATAATGTCTCTAAAATAACTCTATATCAATTCATTTACTTATTGATTACAAACTATAGCCCAATATTTTCGTGTCCCAGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAAGGATAAGCTANCATTCTATAACANATGATCAAATATGGCCTACTCANAACAGTGTAAACTACCTGAGCGGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8769#0 ------------------------------------------CTCGAGGCCAAAAATTCG 18 consensus_8769#1 ----------------------------------------------GAGCCAAAAATTCG 14 consensus_8769#2 ATTTTAATTGAAATGACGTAGAACTTTTCATTTATTCAGCCAATTCATCTCATAACTACC 60 ** ** * * consensus_8769#0 GCACGAGGGGGAAACAGATCTGTCCTTTTTACCTAAAGAATCGATGCATATATGGCGATC 78 consensus_8769#1 GCACGAGGGCAAGGGGAAGCCAT-----TGACTCAAAATATCCAAACA---------GTC 60 consensus_8769#2 GCA-GAAATTTGAAGGAAGCCAT-----TGACTCAAAATATCCAAACA---------GTC 105 *** ** * * * * ** *** *** * ** ** consensus_8769#0 GATGCATTAATTCTCATTGTTTACCAGAAAACAAATTGTCCCAGACTTCAAAATCTATTC 138 consensus_8769#1 AGCCAAACAATC--------TCACCAGATTCTTAACTAACACTGACACTAA----TATTG 108 consensus_8769#2 AGCCAAACAATC--------TCACCAGATTCTTAACTAACACTGACACTAA----TATTG 153 * *** * ****** ** * * * *** ** **** consensus_8769#0 CTTGTAAGTTCTATCTACAAGGCTACTGTCACAATGGGATCAAATGTACATTTTCACACA 198 consensus_8769#1 CCAGTAAAA-CTATTAATAAG-CCAATATCACC-TGGTTTAACAGGT---TTTTCATTCC 162 consensus_8769#2 CCAGTAAAA-CTATTAATAAG-CCAATATCACC-TGGTTTAACAGGT---TTTTCATTCC 207 * **** **** * *** * * * **** *** * * * ** ****** * consensus_8769#0 ATATAAATGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGA 258 consensus_8769#1 GTCAGACTGAAA----AAGTAATCAAA------ATGCAATCATCTCGATATCG----TGA 208 consensus_8769#2 GTCAGACTGAAA----AAGTAATCAAA------ATGCAATCATCTCGATATCG----TGA 253 * * ** ***** ** * * **** ** *** consensus_8769#0 ATAAGGATAAGCTACAATTCTATAACAAATGATCAAATATGGCCTACTCAAACAAGTGTA 318 consensus_8769#1 ATGGGGATA---TGAAGCTTCAGAA---------ATTTATAGCTCCTACGATCAG----- 251 consensus_8769#2 ATGGGGATA---TGAAGCTTCAGAA---------ATTTATAGCTCCTACGATCAG----- 296 ** ***** * * * * ** * *** ** * * ** consensus_8769#0 AACTACCTGAGCGGAGTCCACGTGATTGTTGTAACCAGTGGTTAGAGACTCAAAATCGTT 378 consensus_8769#1 ------CTGAATGGAAAAGA-GCTATCTATATATCGTTCATCTGGAAATT-----TTGTT 299 consensus_8769#2 ------CTGAATGGAAAAGA-GCTATCTATATATCGTTCATCTGGAAATT-----TTGTT 344 **** *** * * ** * ** * * ** * * * *** consensus_8769#0 TGGAATGGCACAGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCA 438 consensus_8769#1 C---------CTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCA 350 consensus_8769#2 C--------------------------CTGG-----TACGATTCCTTTATC-----TTCA 368 *** ** * * * ** ** consensus_8769#0 CCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAA 498 consensus_8769#1 CCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAA 410 consensus_8769#2 CCGTCAGAAAATTTA-----TGTACAT----------TTTCTTAAAAATGA-ACTGTA-- 410 *** ******* * * *** **** * ** ** * **** consensus_8769#0 AGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGG 558 consensus_8769#1 AGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGG 470 consensus_8769#2 ---TTATTCTTGTATAATGTCTCTAAAATAACTCTATATCAATTCATTTACTTATT--GA 465 * * ** ** ***** ** * *** ** * **** * ** **** * consensus_8769#0 TTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAAT 618 consensus_8769#1 TTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAAT 530 consensus_8769#2 TTACAAACTATAG------CCCAATATTTTCGTGTC---CCAGGGTTTCCGCAT------ 510 ** * ** * * ** ** * * * ****** * consensus_8769#0 CAATAGTCAGATTCGTGTTCTTACTTTACATTNTTACATAAATCACANATAACTTACTNN 678 consensus_8769#1 CAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTT 590 consensus_8769#2 -AATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAA-GGATAAGCTANCAT 568 *** * ** * * * * ** * * ** * *** * **** ** consensus_8769#0 TCTCCATGTACTTGGGATACGCGCATCANATATNGTATCTAATGCATCACGTAAACTNTN 738 consensus_8769#1 TCTCCATGTACTTGGGATACGCGCATCANATATGTTATCTAATGCATCACGTAAACTTTC 650 consensus_8769#2 TCTATA----------ACANATG-ATCAAATATGGCCTACTCANAACAGTGTAAACTACC 617 *** * * * * **** **** * * ******* consensus_8769#0 CGACATTATAATCGTACCATCGATTGCTAATTT-AAATCACTCNATGNTGTACGAACATT 797 consensus_8769#1 CGACATTATAATCGTACCATCGATTGCTAATTNTAAATCACTCAATGTTGTACGAACATT 710 consensus_8769#2 TGA--GCGGAGT------------------------------------------------ 627 ** * * consensus_8769#0 GNNATATACACGTNGCATACGATCAAACTTCTGNTTTNAAAANTATATGAGNNGNNNTTA 857 consensus_8769#1 GGATATAACACGTTGCATACGATCAACTTCTTTGTNTAAAA--TATATGAAGTGGTTNTA 768 consensus_8769#2 ------------------------------------------------------------ consensus_8769#0 AATGATCCATTTAANTNAATCGTTCTTTACCCCTGATCNGNNATANGA-------- 905 consensus_8769#1 ATGATCCCATTTAANTAAATCGTCTTTTACCTGGNATCANNGATAAGATATGAGNA 824 consensus_8769#2 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||