These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8777#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1124 fasta sequence [ATTTCGGCACGAGGCGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGATAAATTCACACTGTCAGCTTTAAACCTAAGTCGTACCGCTGCTTCAATTGGTTTTATGAATCCTATTTATGTACCATTGAACGATAAATATGCAGAAGATAATTATGATCCAGAGCCCATAAATTAATTCATCATTCATACCTTTTCTTGGTTGTTTATCTCTAATAAAATCATACAAATAAACACACATATATGTGTGTACTTTTCGTGTCCATATCACAGTTTCAGTCTTTCGGTTGTTGAACAAAGTAATTGTCAAAAAAAATTTCTTGATGGTACATAGTAAGTTACTCGATAACATCACTTATTTGTTCACGTTACCATACAGTAATCATCATCAACATACACTGTTCATGTTNTATTGCGCTTATTCTGTTGTTTTTGTGCCTTTTTGTGAATGAATATGTCGATATGAAAATGTGAAACGACTTTATTATTATTAATGTGTAGAAGGCTCGTTCTTTTTTTTCATTTCCATTGTAATCAGATCTGCACATTCCTTTCCTGATTTCATG-AAAAGCTTTTTTTCTCAGTTTCGTTATCCTCCCCACTCATTTCTCCTTTGGACGTGTGTATTTTCTTGCCTGTAAAGGCGAAACTATTGCTATCGTTTTTCTTGTCCCTTTTATCCTGCCTTTCTAAGACTCAGTCAGCTTTTTTCTCTTATATATACAGTGTGATATAATACGTATGCGCCCTTGCTCACTCACTCAGATATGTGAGTAAAACAGTTTCTCTCACTGAAATCATGTATTCCTTTTTCACATTATTGTTTCCCACCACCAATCGTCCCTTCTGTTTAATTTATTTGGCTGTGCTACATACCATTAGATAAGTAATATATTTTTGT] [+] EMBL CD081461 [ATTTCGGCACGAGGCGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGATAAATTCACACTGTCAGCTTTAAACCTAAGTCGTACCGCTGCTTCAATTGGTTTTATGAATCCTATTTATGTACCATTGAACGATAAATATGCAGAAGATAATTATGATCCAGAGCCCATAAATTAATTCATCATTCATACCTTTTCTTGGTTGTTTATCTCTAATAAAATCATACAAATAAACACACATATATGTGTGTACTTTTCGTGTCCATATCACAGTTTCAGTCTTTCGGTTGTTGAACAAAGTAATTGTCAAAAAAAATTTCTTGATGGTACATAGTAAGTTACTCGATAACATCACTTATTTGTTCACGTTACCATACAGTAATCATCATCAACATACACTGTTCATGTTNTATTGCGCTTATTCTGTTGTTTTTGT ] [+] EMBL CD181332 [ AAATTTCTTGATGGTACATGGTAAGTTACTCGATAACATCACTTATTTGTTCACGTTACCATACAGTAATCATCATCAACGTACACTGTTCATGTTTTATTGCGCTTATTCTGTTGTTTTTGTGCCTTTTTGTGAATGAATATGTCGATATGAAAATGTGAAACGACTTTATTATTATTAATGTGTAGAAGGCTCGTTCTTTTTTTTCATTTCCATTGTAATCAGATCTGCACATTCCTTTCCTGATTTCATGAAAAAGCTTTTTT ] [-] EMBL CD075286 [ ATCATCATCAACATACACTGTTCATGTTNTATTGCGCTTATTCTGTTGTTTTTGTGCCTTTTTGTGAATGAATATGTCGATATGAAAATGTGAAACGACTTTATTATTATTAATGTGTAGAAGGCTCGTTCTTTTTTTTCATTTCCATTGTAATCAGATCTGCACATTCCTTTCCTGATTTCATG AAAAGCTTTTTTTCTCAGTTTCGTTATCCTCCCCACTCATTTCTCCTTTGGACGTGTGTATTTTCTTGCCTGTAAAGGCGAAACTATTGCTATCGTTTTTCTTGTCCCTTTTATCCTGCCTTTCTAAGACTCAGTCAGCTTTTTTCTCTTATATATACAGTGTGATATAATACGTATGCGCCCTTGCTCACTCACTCAGATATGTGAGTAAAACAGTTTCTCTCACTGAAATCATGTATTCCTTTTTCACATTATTGTTTCCCACCACCAATCGTCCCTTCTGTTTAATTTATTTGGCTGTGCTACATACCATTAGATAAGTAATATATTTTTGT] consensusID : consensus_8777#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 665 fasta sequence [TAATTGATCATAATTTCACTGATGTGTCATTAGATTTCAATTTTATACGAAATCATTTACTCGCTGCTGAAATGGTTCATGGTGGCAGTAATACTTATTCATATGCTGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGAATAATTCACACTGTCA] [-] EMBL CD190601 [TAATTGATCATAATTTCACTGATGTGTCATTAGATTTCAATTTTATACGAAATCATTTACTCGCTGCTGAAATGGTTCATGGTGGCAGTAATACTTATTCATATGCTGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCAT ] [+] EMBL CD137926 [ TGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTATAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTACGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGAATAATTCACACTGTCA] [+] EMBL CD137983 [ TGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGATAAATTCACACTGTCA] consensusID : consensus_8777#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [TACGAAATCATTTACTCGCTGCTGAAATGGTTCATGGTGGCAGTAATACTTATTCATATGCTGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGGGGTACCGAGG] [-] EMBL CD129013 [TACGAAATCATTTACTCGCTGCTGAAATGGTTCATGGTGGCAGTAATACTTATTCATATGCTGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGGGGTACCGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8777#1 ------------------------------------------------------------ consensus_8777#2 ------------------------------------------------------------ consensus_8777#0 ATTTCGGCACGAGGCGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCA 60 consensus_8777#1 -------------------------------------------TAATTGATCATAATTTC 17 consensus_8777#2 ------------------------------------------------------------ consensus_8777#0 CCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTG 120 consensus_8777#1 ACTGATGTGTCATTAGATTTCAATTTTATACGAAATCATTTACTCGCTGCTGAAATGGTT 77 consensus_8777#2 ----------------------------TACGAAATCATTTACTCGCTGCTGAAATGGTT 32 consensus_8777#0 ATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGA-ACTGATGTTCAT 179 * * ** *** ** **** * * consensus_8777#1 CATGGTGGCAGTAATACTTATTCATATGCTG-------AAAATTATTGTTCACTTATAC- 129 consensus_8777#2 CATGGTGGCAGTAATACTTATTCATATGCTG-------AAAATTATTGTTCACTTATAC- 84 consensus_8777#0 AATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAAT 239 ** ** * * * ** * * ** ** * *** * * ** consensus_8777#1 -ACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATG 188 consensus_8777#2 -ACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATG 143 consensus_8777#0 GGTAATAATATAGTTCATTCAACTAAATCAAATGATAAATTCACACTGTCAGCTTTAAAC 299 ** * * ** ***** **** * * * *** * * ** consensus_8777#1 TTTGA--GAATTGTT-CTCTAATTCAGTGCTTATATTCGGTTCCTACA--GTTGGACGAT 243 consensus_8777#2 TTTGA--GAATTGTT-CTCTAATTCAGTGCTTATATTCGGTTCCTACA--GTTGGACGAT 198 consensus_8777#0 CTAAGTCGTACCGCTGCTTCAATTGGTTTTATGAATCCTATTTATGTACCATTGAACGAT 359 * * * * * ** **** * * ** * ** * * *** ***** consensus_8777#1 C--TATTCATTGGTCTAGTGGAATCATG---CTATTTAT--ATTTATTACTATATGTTGC 296 consensus_8777#2 C--TATTCATTGGTCTAGTGGAATCATG---CTATTTAT--ATTTATTACTATATGTTGC 251 consensus_8777#0 AAATATGCAGAAGATAATTATGATCCAGAGCCCATAAATTAATTCATCATT-CATACCTT 418 *** ** * * * *** * * ** ** *** ** * * ** consensus_8777#1 ATTTTCAGTGTCTACCTGT-------TTCGACGTATCGGTATTCATAAATGTATTAAAAT 349 consensus_8777#2 ATTTTCAGTGTCTACCTGT-------TTCGACGTATCGGTATTCATAAATGTATTAAAAT 304 consensus_8777#0 TTCTTGGTTGTTTATCTCTAATAAAATCATACAAATAAACACACATATATGTGTGTACTT 478 * ** *** ** ** * * ** ** * **** **** * * * consensus_8777#1 TCGACGACGTTACCAACCATTTGAT-----AGGTATCGTACATCACGTAAACGTAAAACA 404 consensus_8777#2 TCGACGACGTTACCAACCATTTGAT-----AGGTATCGTACATCACGTAAACGTAAAACA 359 consensus_8777#0 TTCGTGTCCATATCACAGTTTCAGTCTTTCGGTTGTTGAACA--AAGTAATTGTCAAAAA 536 * * * ** ** ** * * * * * *** * **** ** *** * consensus_8777#1 ACATTATATCTTGGCAGTACAACCAGCACCAC-CGATATCGTGAACAAT--AATCATAAT 461 consensus_8777#2 ACATTATATCTTGGCAGTACAACCAGCACCAC-CGATATCGTGAACAAT--AATCATAAT 416 consensus_8777#0 AAATT---TCTTGATGGTACATAGTAAGTTACTCGATAACATCACTTATTTGTTCACGTT 593 * *** ***** ***** ** ***** * * * ** *** * consensus_8777#1 AATATCAACGAAGCCGAATCGTCATTGACAACTGATGACAT-TCCTGATAGTTTTCTGTC 520 consensus_8777#2 AATATCAACGAAGCCGAATCGTCATTGACAACTGATGACAT-TCCTGATAGTTTTCTGTC 475 consensus_8777#0 ACCATACAGTAATCATCATCAACATACACTGTTCATGTTNTATTGCGCTTATTCTGTTGT 653 * ** * ** * *** *** ** * *** * * * * ** * * consensus_8777#1 ATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATG----ATAATCTCATT-TCA 575 consensus_8777#2 ATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATG----ATAATCTCATT-TCA 530 consensus_8777#0 TTTTGTGCCTTTTTGTGAATGAATATGTCGATATGAAAATGTGAAACGACTTTATTATTA 713 * ** *** * * *** * ** * **** * * * *** * * consensus_8777#1 TTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATA---GTTCAT 632 consensus_8777#2 TTGCAAACTAGTGGACCAAGAAAGGGGTACCGAGG------------------------- 565 consensus_8777#0 TTAATGTGTAGAAGGCTCGTTCTTTTTTTTCATTTCCATTGTAATCAGATCTGCACATTC 773 ** *** * * consensus_8777#1 TCAACTAAATCAAATGAATAATTCACACTGTCA--------------------------- 665 consensus_8777#2 ------------------------------------------------------------ consensus_8777#0 CTTTCCTGATTTCATGAAAAGCTTTTTTTCTCAGTTTCGTTATCCTCCCCACTCATTTCT 833 consensus_8777#1 ------------------------------------------------------------ consensus_8777#2 ------------------------------------------------------------ consensus_8777#0 CCTTTGGACGTGTGTATTTTCTTGCCTGTAAAGGCGAAACTATTGCTATCGTTTTTCTTG 893 consensus_8777#1 ------------------------------------------------------------ consensus_8777#2 ------------------------------------------------------------ consensus_8777#0 TCCCTTTTATCCTGCCTTTCTAAGACTCAGTCAGCTTTTTTCTCTTATATATACAGTGTG 953 consensus_8777#1 ------------------------------------------------------------ consensus_8777#2 ------------------------------------------------------------ consensus_8777#0 ATATAATACGTATGCGCCCTTGCTCACTCACTCAGATATGTGAGTAAAACAGTTTCTCTC 1013 consensus_8777#1 ------------------------------------------------------------ consensus_8777#2 ------------------------------------------------------------ consensus_8777#0 ACTGAAATCATGTATTCCTTTTTCACATTATTGTTTCCCACCACCAATCGTCCCTTCTGT 1073 consensus_8777#1 --------------------------------------------------- consensus_8777#2 --------------------------------------------------- consensus_8777#0 TTAATTTATTTGGCTGTGCTACATACCATTAGATAAGTAATATATTTTTGT 1124 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||