cluster # 8780

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Schistosoma mansoni
cluster # 8780 cluster # 8780 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8780#0 length = 747 sequences # 4

consensus_8780#1 length = 426 sequences # 1
consensus_8780#2 length = 373 sequences # 2

consensusID : consensus_8780#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 747
fasta sequence

                              [AGATATGGTATTGTGATAGATGGAGGATCGTCTTTGTGTTAAACCACATGGGTGATCATCGTTGGTTCCGATGGGATTGGTTTCATTGTGATTTTGTGCTTCTGGTTCATCATTGCACCTTGAATTTTCTGGGTCACTACCACTCGAAGGTTTTGATGGAGGTTGAAGTCTGAATGTTGTCAGTTGGCCACGCAACCTTGGGTCTTCGAAACGATATGGCAAGTCATCTACAGGGAGCTCCATCAATGGATAAGGAATTTTGACAGTCATGTCCAAGGGGATGAGACGCCAAGGTGCTGGACCCTGAGATGGAGGGACACCACCCATCTGAGTAGTTGTAGTAAAATCAGGTGCGGATCTATCTTCAACCACAATATTAGGAGGGATTGCTTCTGTCTCGGTTTTTGAAAAAAAGTTGCGGCGGGCTCGTACTCTCGAGTTGCAGGCTATGTTCACCTACACATGTAGGCGATGAAGGGGGGATAGTCGAACCGTTTTTACAGTCGTCATTCATCGTTTTACTTGAAAGC--AGAAGAGCTGCCATCATATCGAGTTCTGAGCTGACTATGGCTTCTTCATGTACTGCATCGAAATTCGGTCGAATAGGTGGAGAGGGCCTTACCCCAGCCCCATAAAACGTCTCACATCTAGGCCTAAACCTAGGGAATCTCATGCTTCCAGGGTCCATCATCCGCATTCGCGGAGGCATTATTCTTGAAGGTGGACATCTAAGGGGTGTATCAAGCA]

[-] EMBL BG931226             [AGATATGGTATTGTGATAGATGGAGGATCGTCTTTGTGTTAAACCACATGGGTGATCATCGTTGGTTCCGATGGGATTGGTTTCATTGTGATTTTGTGCTTCTGGTTCATCATTGCACCTTGAATTTTCTGGGTCACTACCACTCGAAGGTTTTGATGGAGGTTGAAGTCTGAATGTTGTCAGTTGGCCACGCAACCTTGGGTCTTCGAAACGATATGGCAAGTCATCTACAGGGAGCTCCATCAATGGATAAGGAATTTTGACAGTCATGTCCAAGGGGATGAGACGCCAAGGTGCTGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD183390             [                                                                                                                  GCACCTTGAATTTTCTGGGTCACTACCACTCGAAGGTTTTGATGGAGGTTGAAGTCTGAATGTTGTCAGTTGGCCACGCAACCTTGGGTCTTCGAAACGATATGGCAAGTCATCTACAGGGAGCTCCATCAATGGATAAGGAATTTTGACAGTCATGTCCAAGGGGATGAGACGCCAAGGTGCTGGACCCTGAGATGGAGGGACACCACCCATCTGAGTAGTTGTAGTAAAATCAGGTGCGGATCTATCTTCAACCACAATATTAGGAGGGATTGCTTCTGTCTCGGTTTTTGAAAAAAAGTTGCGGCGGGCTCGTACTCTCGAGTTGCAGGCTATGTTCACCTACACATGTAGGCGATGAAGGGGGGATAGTCGAACCGTTTTTACAGTCGTCATTCATCGTTTTACTTGAAAGC  AGAAGAGCTGCCATCATATCGAGTTCTGAGCTGACTATGGCTTCTTCATGTACTGCATCGAAATTCGGTCGAATAGGTGGAGAGGGC                                                                                                                                  ]
[-] EMBL CD090847             [                                                                                                                                                                                                                                                                                                                                                                                             AGGGATTGCTTTTGTCTCGGTTTTTGAAAAAAAGTTGCGGCGGGCTCGTACTCTCGAGTTGCAGGCTATGTTCACCTACACATGTAGGCGATGAAGGGGGGATAGTCGAACCGTTTTTACAGTCGTCATTCATCG                                                                                                                                                                                                                                         ]
[-] EMBL CD132490             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTATGTTCACCTACGCATGTAGGCGATGAAGGGGGGATAGTCGAACCGTTTTTACAGTCGTCATTCATCGTTTTAC TG AAGCANAGAAGAGCTGCCATCATATCGAGTTCTGAGCTGACTATGGCTTCTTCATGTACTGCATCGAAATTCGGTCGAATAGGTGGAGAGGGCCTTACCCCAGCCCCATAAAACGTCTCACATCTAGGCCTAAACCTAGGGAATCTCATGCTTCCAGGGTCCATCATCCGCATTCGCGGAGGCATTATTCTTGAAGGTGGACATCTAAGGGGTGTATCAAGCA]




>consensus_8780#0
AGATATGGTATTGTGATAGATGGAGGATCGTCTTTGTGTTAAACCACATGGGTGATCATC
GTTGGTTCCGATGGGATTGGTTTCATTGTGATTTTGTGCTTCTGGTTCATCATTGCACCT
TGAATTTTCTGGGTCACTACCACTCGAAGGTTTTGATGGAGGTTGAAGTCTGAATGTTGT
CAGTTGGCCACGCAACCTTGGGTCTTCGAAACGATATGGCAAGTCATCTACAGGGAGCTC
CATCAATGGATAAGGAATTTTGACAGTCATGTCCAAGGGGATGAGACGCCAAGGTGCTGG
ACCCTGAGATGGAGGGACACCACCCATCTGAGTAGTTGTAGTAAAATCAGGTGCGGATCT
ATCTTCAACCACAATATTAGGAGGGATTGCTTCTGTCTCGGTTTTTGAAAAAAAGTTGCG
GCGGGCTCGTACTCTCGAGTTGCAGGCTATGTTCACCTACACATGTAGGCGATGAAGGGG
GGATAGTCGAACCGTTTTTACAGTCGTCATTCATCGTTTTACTTGAAAGCAGAAGAGCTG
CCATCATATCGAGTTCTGAGCTGACTATGGCTTCTTCATGTACTGCATCGAAATTCGGTC
GAATAGGTGGAGAGGGCCTTACCCCAGCCCCATAAAACGTCTCACATCTAGGCCTAAACC
TAGGGAATCTCATGCTTCCAGGGTCCATCATCCGCATTCGCGGAGGCATTATTCTTGAAG
GTGGACATCTAAGGGGTGTATCAAGCA

consensusID : consensus_8780#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [GAACGTTTGAAGCTGACTGGGAGGTTGGTGCTGGGACCATGATCCTTCGCCTTCGAAATCGCGGATCATCAAGGTAGGAACGATCACCTTGCCGACTAGGTACGTGTAAATGATCGGATGAGGTATTAGCAAAGGTGTTAGCCATTTCATGCAACTGCAGTTTGATGGGTCGTCTTTGTGTTAAACCACCTGGGTTATCATCGTTGGTTCCAATGGGATTGGTTTCATTGTGATTTTGTGCTTCTGGTTCATCATTGCACCTTGAATTTTCTGGGTCACTACCACTCGAAGGTTTTGATGGAGGTTGAAGTCTGAATGTTGTCAGTTGGCCACGCAACCTTGGGTCCTCGAAACGATATGGCAAGTCATCTACAGGGAGCTCCATCAATGGATAAGGAATTTTGACAGTCATGTCCAAGGGGATGA]

[+] EMBL CD197844             [GAACGTTTGAAGCTGACTGGGAGGTTGGTGCTGGGACCATGATCCTTCGCCTTCGAAATCGCGGATCATCAAGGTAGGAACGATCACCTTGCCGACTAGGTACGTGTAAATGATCGGATGAGGTATTAGCAAAGGTGTTAGCCATTTCATGCAACTGCAGTTTGATGGGTCGTCTTTGTGTTAAACCACCTGGGTTATCATCGTTGGTTCCAATGGGATTGGTTTCATTGTGATTTTGTGCTTCTGGTTCATCATTGCACCTTGAATTTTCTGGGTCACTACCACTCGAAGGTTTTGATGGAGGTTGAAGTCTGAATGTTGTCAGTTGGCCACGCAACCTTGGGTCCTCGAAACGATATGGCAAGTCATCTACAGGGAGCTCCATCAATGGATAAGGAATTTTGACAGTCATGTCCAAGGGGATGA]




>consensus_8780#1
GAACGTTTGAAGCTGACTGGGAGGTTGGTGCTGGGACCATGATCCTTCGCCTTCGAAATC
GCGGATCATCAAGGTAGGAACGATCACCTTGCCGACTAGGTACGTGTAAATGATCGGATG
AGGTATTAGCAAAGGTGTTAGCCATTTCATGCAACTGCAGTTTGATGGGTCGTCTTTGTG
TTAAACCACCTGGGTTATCATCGTTGGTTCCAATGGGATTGGTTTCATTGTGATTTTGTG
CTTCTGGTTCATCATTGCACCTTGAATTTTCTGGGTCACTACCACTCGAAGGTTTTGATG
GAGGTTGAAGTCTGAATGTTGTCAGTTGGCCACGCAACCTTGGGTCCTCGAAACGATATG
GCAAGTCATCTACAGGGAGCTCCATCAATGGATAAGGAATTTTGACAGTCATGTCCAAGG
GGATGA

consensusID : consensus_8780#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 373
fasta sequence

                              [TGTGGTATTGGGATGGACGCGGGCTCCATCAATGGATAAAGAATTTTGACAGTCATGTCCAAGGGGATGAGACGCCAAGGTGCTGGACCCTGAGATGGAAGGACACCACCCATCTGAGTAGTTGTAGTAAAATCAGGTGCGGATCTATCTTCAACCACAATATTAGGAGGGATTGCTTCTGTCTCGGTTTTTGAAAAAAGCTAAAATAACAGGGAAGAAAAAATTCATCATAAACATTAATGTAGTGAAATGTAAGTCAACACCTATTGAACAAGGAAACCCTTCACATTTCTGATGAATTATTATTAGCTACAAGTTCAAAGTACGTAATACTAATTCCGCATCAAGTTTTATGGCGGGACCAATGTAAATC]

[+] EMBL BG931414             [TGTGGTATTGGGATGGACGCGGGCTCCATCAATGGATAAAGAATTTTGACAGTCATGTCCAAGGGGATGAGACGCCAAGGTGCTGGACCCTGAGATGGAAGGACACCACCCATCTGAGTAGTTGTAGTAAAATCAGGTGCGGATCTATCTTCAACCACAATATTAGGAGGGATTGCTTCTGTCTCGGTTTTTGAAAAAAGCTAAAATAACAGGGAAGAAAAAATTCATCATAAACATTAATGTAGTGAAATGTAAGTCAACACCTATTGAACAAGGAAACCCTTCACATTTCTGATGAATTATTATTAGCTACAAGTTCAAAGTACGTAATACTAATTCCGCATCAAGTTTTATGGCGGGACCAATGTAAATC]
[-] EMBL CD180959             [                                           TTTTGACAGTCATGTCCAAGGGGATGAGACGCCAAGGTGCTGGACCTTGAGATGGATGGACACCACCCATCTGAGTAGTTGTAGTAAAATCAGGTGCGGATATATCTTCAACCACAATATTAGGAGGGATTGCTTCTGTCTCGGTTTTTGAAAAAg                                                                                                                                                                              ]




>consensus_8780#2
TGTGGTATTGGGATGGACGCGGGCTCCATCAATGGATAAAGAATTTTGACAGTCATGTCC
AAGGGGATGAGACGCCAAGGTGCTGGACCCTGAGATGGAAGGACACCACCCATCTGAGTA
GTTGTAGTAAAATCAGGTGCGGATCTATCTTCAACCACAATATTAGGAGGGATTGCTTCT
GTCTCGGTTTTTGAAAAAAGCTAAAATAACAGGGAAGAAAAAATTCATCATAAACATTAA
TGTAGTGAAATGTAAGTCAACACCTATTGAACAAGGAAACCCTTCACATTTCTGATGAAT
TATTATTAGCTACAAGTTCAAAGTACGTAATACTAATTCCGCATCAAGTTTTATGGCGGG
ACCAATGTAAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8780#0      ------------------------------------------------------------
consensus_8780#1      GAACGTTTGAAGCTGACTGGGAGGTTGGTGCTGGGACCATGATCCTTCGCCTTCGAAATC 60
consensus_8780#2      -------------------------------------TGTGGTATTGGGAT---GGACGC 20
                                                                                  

consensus_8780#0      ------------------------------------------------------------
consensus_8780#1      GCGGATCATCAAGGTAGGAACGATCACCTTGCCGACTAGGTACGTGTAAATGATCGGATG 120
consensus_8780#2      GGGCTCCATCAATGGATAAAGAATT---TTGACAGTCATGTCCAAGGGGATGAGACGCCA 77
                                                                                  

consensus_8780#0      ---------------------AGATATGGTATTGTGATAGATGGA-GGATCGTCTTTGTG 38
consensus_8780#1      AGGTATTAGCAAAGGTGTTAGCCATTTCATGCAACTGCAGTTTGATGGGTCGTCTTTGTG 180
consensus_8780#2      AGGTGCTGGACCCTGAGATGGAAG---GACACCAC--CCATCTGAGTAGTTGTA-----G 127
                                                                 **    * **      *

consensus_8780#0      TTAAACCACATGGGTGATCATCGTTGGTTCCGATGGGATTGGTTTCATTGTGATTTTGTG 98
consensus_8780#1      TTAAACCACCTGGGTTATCATCGTTGGTTCCAATGGGATTGGTTTCATTGTGATTTTGTG 240
consensus_8780#2      TAAAATCAGGTGCGGATCTATCTTCAACCACAAT---ATTAGGAGGGAT-TGCTTCTGT- 182
                      * *** **  ** *     *** *      * **   *** *      * ** ** *** 

consensus_8780#0      CTTCTGGTTCATCATTGCACCTTGAATTTTCTGG--GTCACTACCACTCGAAGGTTTTGA 156
consensus_8780#1      CTTCTGGTTCATCATTGCACCTTGAATTTTCTGG--GTCACTACCACTCGAAGGTTTTGA 298
consensus_8780#2      --CTCGGTTTTTGAAAAAAGCTAAAATAACAGGGAAGAAAAAATTCATCATAAACATTAA 240
                           ****  * *    * **  ***     **  *  *  *    **  *    ** *

consensus_8780#0      TGGAGGTTGAAGTCTGAAT-GTTGTCAGTTGGCCACGCAA---CCTTGGGTCTTCGAAAC 212
consensus_8780#1      TGGAGGTTGAAGTCTGAAT-GTTGTCAGTTGGCCACGCAA---CCTTGGGTCCTCGAAAC 354
consensus_8780#2      TGTAG--TGAAATGTAAGTCAACACCTATTGAACAAGGAAACCCTTCACATTTCTGATGA 298
                      ** **  **** * * * *      *  ***  ** * **   * *    *    **   

consensus_8780#0      GATATGGCAAGTCA----TCTACAGGGAGCTCCATCAATGGATAAGGAATTTTGACAGTC 268
consensus_8780#1      GATATGGCAAGTCA----TCTACAGGGAGCTCCATCAATGGATAAGGAATTTTGACAGTC 410
consensus_8780#2      ATTATTATTAGCTACAAGTTCAAAGTACGTAATACTAATTCCGCATCAAGTTTTATGGCG 358
                        ***    **  *    *  * **   *    *  ***     *  ** *** *  *  

consensus_8780#0      ATGTCCAAGGGGATGAGACGCCAAGGTGCTGGACCCTGAGATGGAGGGACACCACCCATC 328
consensus_8780#1      ATGTCCAAGGGGATGA-------------------------------------------- 426
consensus_8780#2      GGACCAATGTAAATC--------------------------------------------- 373
                          * * *   **                                              

consensus_8780#0      TGAGTAGTTGTAGTAAAATCAGGTGCGGATCTATCTTCAACCACAATATTAGGAGGGATT 388
consensus_8780#1      ------------------------------------------------------------
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      GCTTCTGTCTCGGTTTTTGAAAAAAAGTTGCGGCGGGCTCGTACTCTCGAGTTGCAGGCT 448
consensus_8780#1      ------------------------------------------------------------
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      ATGTTCACCTACACATGTAGGCGATGAAGGGGGGATAGTCGAACCGTTTTTACAGTCGTC 508
consensus_8780#1      ------------------------------------------------------------
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      ATTCATCGTTTTACTTGAAAGCAGAAGAGCTGCCATCATATCGAGTTCTGAGCTGACTAT 568
consensus_8780#1      ------------------------------------------------------------
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      GGCTTCTTCATGTACTGCATCGAAATTCGGTCGAATAGGTGGAGAGGGCCTTACCCCAGC 628
consensus_8780#1      ------------------------------------------------------------
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      CCCATAAAACGTCTCACATCTAGGCCTAAACCTAGGGAATCTCATGCTTCCAGGGTCCAT 688
consensus_8780#1      ------------------------------------------------------------
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      CATCCGCATTCGCGGAGGCATTATTCTTGAAGGTGGACATCTAAGGGGTGTATCAAGCA 747
consensus_8780#1      -----------------------------------------------------------
consensus_8780#2      -----------------------------------------------------------