cluster # 8781

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Schistosoma mansoni
cluster # 8781 cluster # 8781 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8781#0 length = 518 sequences # 3

consensus_8781#1 length = 455 sequences # 3
consensus_8781#2 length = 297 sequences # 1

consensusID : consensus_8781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 518
fasta sequence

                              [TCGAGGCCAGAATCGGCACGAGGCCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAGGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAGTTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAGGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGATTCAGATGATCATGAAGCATATATAACTGCTGGC]

[+] EMBL CD083479             [TCGAGGCCAGAATCGGCACGAGGCCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGAT TCGTGAGGCTAA GTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCCAGATTCCGATGA                         ]
[-] EMBL CD146985             [                                                                                         CAAAGATATCGTGAGGCTAAGGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAGTTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAGGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGATTCAGATGATCATGAAGCATATATAACTGCTGGC]
[-] EMBL CD146963             [                                                                                          AAAGATATCGTGAGGCTAAGGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAGTTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAGGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGATTCAGATGATCATGAAGCATATATAACTGCTGGC]




>consensus_8781#0
TCGAGGCCAGAATCGGCACGAGGCCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGA
CTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAGGTAACTGTGA
ATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGA
CGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCG
ATACTTATTTAATGTCTGAGTTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAAC
TACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTA
AGGTTACGCTCAATATGTGTACAAGGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTA
ACCTCGTTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTC
AAGATTCAGATGATCATGAAGCATATATAACTGCTGGC

consensusID : consensus_8781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 455
fasta sequence

                              [ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACATATTCAACCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTA]

[+] EMBL CD140098             [ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACATATTCAACCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTA]
[+] EMBL CD140091             [ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACATATTCAACCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATTATCCAGTTCG                                                                 ]
[+] EMBL CD140228             [ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACATATTCAACCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCA                                                                      ]




>consensus_8781#1
ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACATATTCAACC
GATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCA
GCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGA
TGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAG
ATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGA
GCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGA
TATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAA
GAAAAAGACAAGGTTCATTCCGAAATTTAATGGTA

consensusID : consensus_8781#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [CTGCGTTACATTACTTCCTTATTATACAGTAACAACCCAATAAGCTTTCCCCGTTTAAAATTGTGAATCTTGTGATTGTATTGTTTTCTGTATTTCATGGGGTTCACAAACACAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGCTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGTACGTTAAAGGAGAAACTCACATATAAAAGTAACTTATTCTGTTTTGTGTTGATATAAACC]

[+] EMBL CD135042             [CTGCGTTACATTACTTCCTTATTATACAGTAACAACCCAATAAGCTTTCCCCGTTTAAAATTGTGAATCTTGTGATTGTATTGTTTTCTGTATTTCATGGGGTTCACAAACACAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGCTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGTACGTTAAAGGAGAAACTCACATATAAAAGTAACTTATTCTGTTTTGTGTTGATATAAACC]




>consensus_8781#2
CTGCGTTACATTACTTCCTTATTATACAGTAACAACCCAATAAGCTTTCCCCGTTTAAAA
TTGTGAATCTTGTGATTGTATTGTTTTCTGTATTTCATGGGGTTCACAAACACAGGTTAC
GCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGC
TCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGTACG
TTAAAGGAGAAACTCACATATAAAAGTAACTTATTCTGTTTTGTGTTGATATAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8781#0      ------------------------------------TCGAGGCCAGAATCGGCACGAGGC 24
consensus_8781#1      ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACA-TATTCAAC 59
consensus_8781#2      ------------------------------------------------------------
                                                                                  

consensus_8781#0      CGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACC 84
consensus_8781#1      CGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACC 119
consensus_8781#2      ------------------------------------CTGCGTTACATTACTTCCTTATTA 24
                                                          ** * * *** *  ***   *   

consensus_8781#0      AGCAGCAAAGATATCGTGAGGCTAAGGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAG 144
consensus_8781#1      AGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAG 179
consensus_8781#2      TACAGTAACAACCCAATAAGCTTTCCCCGTTTAAAATTGTGAATCTTGTGATTGTATTGT 84
                        *** **  *     * **  *        *   * **  **      ** *  *    

consensus_8781#0      ATGCTGCTCGTGA-GCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCT 203
consensus_8781#1      ATGCTGCTCGTGA-GCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCT 238
consensus_8781#2      TTTCTGTATTTCATGGGGTTCACAAACACAGGTTACGCTCAATATGTGTAC-AAAGAAAA 143
                       * ***    * * *   ** *  ** ***  *    *  ***  * * *  ***     

consensus_8781#0      AGATTAAATATTTTGAAAGGTCGAATTCCAACTTC-CGATACTTATTTAATGTCTGAGTT 262
consensus_8781#1      AGATTAAATATTTTGAAAGGTCGAATTCCAACTTC-CGATACTTATTTAATGTCTGAATT 297
consensus_8781#2      AGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGCTCTACCGAATTTAT---TGGATT 200
                      ***  *  *   **   *  *  ***   *** ** *  ***  * ** **   **  **

consensus_8781#0      TGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCC 322
consensus_8781#1      TGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCC 357
consensus_8781#2      TCATGCCTGCTCATCGAGTATT-----GGCCATATGTCAAGTACGTTAAAGGAGAAACTC 255
                      * *  *      **  *** *       **  *    * * * *** ****     ** *

consensus_8781#0      GGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTAC 382
consensus_8781#1      GGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTAC 417
consensus_8781#2      ----ACATATAAAAGTA-ACTTATTCTGTTTTGTGTTGATATAAACC------------- 297
                          *  *** *  ***    ** **   ** * *** *  * *  *             

consensus_8781#0      AAGGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATT 442
consensus_8781#1      AAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTA---------------------- 455
consensus_8781#2      ------------------------------------------------------------
                                                                                  

consensus_8781#0      GGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGATTCAGATGATCATGAAGC 502
consensus_8781#1      ------------------------------------------------------------
consensus_8781#2      ------------------------------------------------------------
                                                                                  

consensus_8781#0      ATATATAACTGCTGGC 518
consensus_8781#1      ----------------
consensus_8781#2      ----------------